Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.47064 * 2 1 4 4 C 1.52995 * 109.46740 * 240.00561 * 2 1 3 5 5 C 1.52998 * 109.47375 * 299.99711 * 4 2 1 6 6 C 1.53001 * 109.47141 * 300.00367 * 5 4 2 7 7 C 1.52997 * 109.47016 * 60.00201 * 6 5 4 8 8 H 1.08997 * 109.47666 * 59.99654 * 7 6 5 9 9 O 1.42896 * 109.47339 * 180.02562 * 7 6 5 10 10 C 1.35680 * 116.99697 * 275.12448 * 9 7 6 11 11 C 1.39307 * 119.81857 * 5.10924 * 10 9 7 12 12 C 1.36434 * 120.18709 * 180.02562 * 11 10 9 13 13 C 1.40838 * 119.81147 * 359.97438 * 12 11 10 14 14 C 1.41215 * 120.17893 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99951 * 33.84108 * 14 13 12 16 16 C 1.39888 * 119.99801 * 213.83544 * 14 13 12 17 17 N 1.30886 * 120.00131 * 0.40344 * 16 14 13 18 18 Si 1.86806 * 119.99920 * 180.40912 * 16 14 13 19 19 H 1.48496 * 109.46942 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47173 * 119.99871 * 18 16 14 21 21 H 1.48500 * 109.46810 * 240.00149 * 18 16 14 22 22 C 1.40829 * 119.63886 * 0.02562 * 13 12 11 23 23 C 1.36438 * 119.81484 * 359.97438 * 22 13 12 24 24 C 1.52990 * 109.46900 * 120.00456 * 2 1 3 25 25 H 1.09009 * 109.47220 * 179.97438 * 24 2 1 26 26 C 1.52995 * 109.47509 * 299.99634 * 24 2 1 27 27 H 1.08998 * 109.46682 * 299.99633 * 1 2 3 28 28 H 1.09000 * 109.46602 * 59.99428 * 1 2 3 29 29 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47682 * 60.00116 * 4 2 1 31 31 H 1.09004 * 109.47325 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47173 * 60.00082 * 5 4 2 33 33 H 1.08998 * 109.47563 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.47185 * 299.99560 * 6 5 4 35 35 H 1.09008 * 109.47070 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.90718 * 0.27235 * 11 10 9 37 37 H 1.08000 * 120.09717 * 180.02562 * 12 11 10 38 38 H 0.97000 * 119.99923 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.09526 * 179.97438 * 22 13 12 40 40 H 1.08004 * 119.90740 * 180.02562 * 23 22 13 41 41 H 1.09000 * 109.47564 * 179.97438 * 26 24 2 42 42 H 1.08998 * 109.47187 * 300.00271 * 26 24 2 43 43 H 1.09001 * 109.46903 * 60.00641 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1639 1.2490 8 1 0.4401 -2.1639 1.2490 9 8 2.0068 -2.8372 2.4157 10 6 1.2804 -3.8950 2.8565 11 6 0.1888 -4.3425 2.1157 12 6 -0.5472 -5.4052 2.5522 13 6 -0.2003 -6.0504 3.7550 14 6 -0.9570 -7.1507 4.2143 15 1 -1.3987 -7.8357 3.5057 16 6 -1.1344 -7.3533 5.5870 17 7 -0.6057 -6.5187 6.4455 18 14 -2.1259 -8.8152 6.1949 19 1 -2.6130 -9.6006 5.0325 20 1 -1.2674 -9.6748 7.0489 21 1 -3.2858 -8.3319 6.9863 22 6 0.9048 -5.5916 4.4978 23 6 1.6304 -4.5276 4.0473 24 6 2.0400 -0.7213 1.2491 25 1 3.1301 -0.7217 1.2489 26 6 1.5301 -0.0002 2.4984 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7216 -1.2492 32 1 0.4400 -2.1637 -1.2494 33 1 1.8937 -2.6775 -2.1392 34 1 3.1301 -2.8850 -0.0003 35 1 1.6764 -3.9126 -0.0001 36 1 -0.0733 -3.8493 1.1913 37 1 -1.3930 -5.7511 1.9765 38 1 -0.7290 -6.6590 7.3973 39 1 1.1772 -6.0807 5.4215 40 1 2.4784 -4.1748 4.6156 41 1 1.8931 -0.5144 3.3884 42 1 1.8935 1.0274 2.4985 43 1 0.4401 -0.0002 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = -59.923594 kcal Electronic energy + Delta-G solvation = -21574.069601 eV Core-core repulsion = 18582.423261 eV Total energy + Delta-G solvation = -2991.646340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.36610 -39.54331 -37.71700 -35.11559 -33.75907 -32.25908 -31.30120 -30.75734 -28.33490 -26.99337 -26.32975 -23.83771 -22.89667 -22.33514 -21.86746 -19.60712 -19.07948 -18.69948 -17.02077 -16.75816 -16.20698 -15.87515 -15.63320 -15.33227 -15.15991 -14.87630 -14.42650 -14.11049 -13.98246 -13.78450 -13.45394 -13.36367 -13.19034 -12.98557 -12.85007 -12.75862 -12.50431 -12.44599 -12.24530 -12.04091 -11.74057 -11.62484 -11.53352 -11.33440 -11.06496 -11.02678 -10.91334 -10.70123 -9.55357 -8.75516 -8.48669 -6.27341 0.95030 1.03243 1.40002 1.49856 1.55093 2.25565 2.60814 2.80791 3.63973 3.66848 3.75682 3.93542 4.13159 4.20215 4.21919 4.34248 4.35616 4.38300 4.44267 4.52422 4.64793 4.73229 4.85463 4.88426 4.92171 5.04230 5.05598 5.07168 5.14303 5.18400 5.22376 5.23520 5.26770 5.33975 5.35891 5.41870 5.46987 5.62568 5.64463 5.69190 5.89478 6.08708 6.29591 6.60526 6.85025 6.99588 7.11928 8.47530 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034815 B = 0.003982 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.052969 B = 7029.301353 C = 7261.424160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 H 0.093 0.907 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.142 4.142 7 C 0.088 3.912 8 H 0.061 0.939 9 O -0.330 6.330 10 C 0.024 3.976 11 C -0.174 4.174 12 C -0.193 4.193 13 C 0.047 3.953 14 C -0.501 4.501 15 H 0.073 0.927 16 C 0.027 3.973 17 N -0.851 5.851 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.135 4.135 23 C -0.145 4.145 24 C -0.077 4.077 25 H 0.074 0.926 26 C -0.146 4.146 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.283 0.717 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 11.708 -11.898 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.096 4.096 3 H 0.111 0.889 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.180 4.180 7 C 0.032 3.968 8 H 0.079 0.921 9 O -0.246 6.246 10 C -0.020 4.020 11 C -0.192 4.192 12 C -0.213 4.213 13 C 0.045 3.955 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.184 4.184 17 N -0.480 5.480 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.095 4.095 25 H 0.093 0.907 26 C -0.203 4.203 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.270 11.831 -11.582 16.876 hybrid contribution -0.560 -0.946 0.676 1.291 sum 2.710 10.884 -10.906 15.645 Atomic orbital electron populations 1.22047 0.95298 1.01698 1.02429 1.21113 0.96016 0.99638 0.92784 0.88885 1.21605 1.00958 0.94607 0.97797 1.21533 1.01100 0.96288 0.96255 1.22074 1.01513 0.99260 0.95144 1.22527 0.98367 0.92366 0.83511 0.92092 1.85870 1.50985 1.42407 1.45299 1.18724 0.95353 0.92171 0.95770 1.20688 0.97711 1.00061 1.00771 1.20922 1.01560 0.98681 1.00123 1.17954 0.91629 0.93776 0.92099 1.19684 1.30503 1.10294 0.92796 0.90920 1.26696 0.95911 0.99278 0.96511 1.69855 1.38892 1.35521 1.03706 0.85084 0.78041 0.77433 0.78625 1.18277 1.19125 1.19381 1.21054 0.95265 0.98065 1.01111 1.20069 1.01910 0.98769 0.95642 1.21196 1.00729 0.91240 0.96359 0.90740 1.21815 1.01053 1.00478 0.96959 0.92539 0.90998 0.93467 0.89824 0.91432 0.91599 0.90615 0.91569 0.93192 0.85814 0.87696 0.90693 0.86828 0.87427 0.94337 0.90645 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.15 71.99 0.59 -2.30 16 2 C -0.08 -1.38 2.72 -10.79 -0.03 -1.41 16 3 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -1.82 5.45 30.59 0.17 -1.66 16 5 C -0.11 -2.29 5.65 30.59 0.17 -2.12 16 6 C -0.14 -3.90 5.18 30.59 0.16 -3.74 16 7 C 0.09 2.72 1.27 30.60 0.04 2.76 16 8 H 0.06 1.99 4.57 -2.39 -0.01 1.98 16 9 O -0.33 -13.27 9.11 -89.97 -0.82 -14.08 16 10 C 0.02 1.11 6.63 22.79 0.15 1.26 16 11 C -0.17 -7.85 8.16 22.11 0.18 -7.67 16 12 C -0.19 -9.70 9.74 22.48 0.22 -9.49 16 13 C 0.05 2.64 5.54 -21.28 -0.12 2.52 16 14 C -0.50 -27.90 9.04 23.40 0.21 -27.69 16 15 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 16 C 0.03 1.40 5.38 85.23 0.46 1.85 16 17 N -0.85 -46.39 10.70 21.82 0.23 -46.15 16 18 Si 0.99 39.88 29.56 68.60 2.03 41.91 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 22 C -0.14 -7.45 8.59 22.48 0.19 -7.26 16 23 C -0.15 -7.27 9.92 22.11 0.22 -7.05 16 24 C -0.08 -1.87 2.23 -10.80 -0.02 -1.89 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 C -0.15 -3.67 8.70 71.98 0.63 -3.04 16 27 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.00 4.81 -2.39 -0.01 0.99 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.07 1.33 6.43 -2.39 -0.02 1.31 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.57 6.91 -2.38 -0.02 1.55 16 36 H 0.12 4.81 5.40 -2.91 -0.02 4.80 16 37 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.28 14.01 8.30 -92.71 -0.77 13.25 16 39 H 0.11 6.54 6.23 -2.91 -0.02 6.52 16 40 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 41 H 0.04 1.16 7.68 -2.39 -0.02 1.14 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.35 6.43 -2.39 -0.02 1.33 16 Total: -1.00 -61.27 325.31 5.64 -55.63 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.99 Total: 29.62 kcal Atomic # 6 Polarization: -70.13 SS G_CDS: 3.21 Total: -66.92 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.23 Total: -46.15 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.82 Total: -14.08 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -61.27 5.64 -55.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.298 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds