Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47585 * 2 1 4 4 C 1.53002 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.30994 * 120.00092 * 124.99911 * 5 4 3 7 7 C 1.50699 * 119.99835 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47024 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47064 * 239.99724 * 7 6 5 10 10 O 1.42908 * 109.47155 * 119.99942 * 7 6 5 11 11 C 1.35670 * 116.99516 * 203.23644 * 10 7 6 12 12 C 1.39311 * 119.82678 * 355.53128 * 11 10 7 13 13 C 1.36431 * 120.19058 * 180.25291 * 12 11 10 14 14 C 1.40843 * 119.80746 * 359.49794 * 13 12 11 15 15 C 1.41211 * 120.17631 * 180.27302 * 14 13 12 16 16 H 1.08007 * 120.00326 * 331.10713 * 15 14 13 17 17 C 1.39887 * 120.00078 * 151.10399 * 15 14 13 18 18 N 1.30883 * 119.99621 * 348.96551 * 17 15 14 19 19 Si 1.86801 * 120.00437 * 168.96716 * 17 15 14 20 20 H 1.48498 * 109.46689 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47192 * 120.00020 * 19 17 15 22 22 H 1.48498 * 109.47199 * 240.00164 * 19 17 15 23 23 C 1.40826 * 119.64056 * 0.24979 * 14 13 12 24 24 C 1.36432 * 119.81761 * 0.02562 * 23 14 13 25 25 H 1.08992 * 109.48009 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47081 * 300.00274 * 1 2 3 27 27 H 1.09004 * 109.47112 * 59.99062 * 1 2 3 28 28 H 1.09006 * 109.47110 * 240.00218 * 2 1 3 29 29 H 1.08996 * 109.47386 * 120.00897 * 2 1 3 30 30 H 1.09003 * 109.46870 * 60.00488 * 3 2 1 31 31 H 1.08992 * 109.47226 * 300.00133 * 3 2 1 32 32 H 1.08998 * 109.46912 * 59.99870 * 4 3 2 33 33 H 1.09005 * 109.47166 * 300.00185 * 4 3 2 34 34 H 1.08004 * 119.99716 * 305.00594 * 5 4 3 35 35 H 1.08006 * 120.00287 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.47171 * 300.00091 * 9 7 6 37 37 H 1.09000 * 109.47026 * 60.00108 * 9 7 6 38 38 H 1.08998 * 109.47087 * 180.02562 * 9 7 6 39 39 H 1.08004 * 119.89872 * 0.02562 * 12 11 10 40 40 H 1.07995 * 120.09726 * 179.77048 * 13 12 11 41 41 H 0.97009 * 120.00084 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.09121 * 180.02562 * 23 14 13 43 43 H 1.08002 * 119.91268 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0725 2.8631 0.0000 6 6 4.9048 3.2631 0.9292 7 6 5.4067 4.6841 0.9301 8 1 4.9712 5.2238 0.0892 9 6 6.9315 4.6864 0.8036 10 8 5.0292 5.3219 2.1519 11 6 4.9551 6.6765 2.1422 12 6 5.3314 7.3829 1.0019 13 6 5.2647 8.7454 0.9857 14 6 4.8037 9.4374 2.1226 15 6 4.7260 10.8473 2.1123 16 1 5.4034 11.4211 1.4971 17 6 3.7717 11.5010 2.8990 18 7 2.8163 10.8152 3.4733 19 14 3.8610 13.3525 3.1297 20 1 5.0258 13.8890 2.3811 21 1 2.6143 13.9759 2.6176 22 1 4.0135 13.6647 4.5735 23 6 4.4202 8.7155 3.2693 24 6 4.4983 7.3534 3.2710 25 1 -0.3635 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.9329 0.9286 -0.8908 33 1 3.9338 0.9283 0.8891 34 1 3.7464 3.5516 -0.7656 35 1 5.2305 2.5748 1.6951 36 1 7.3667 4.1467 1.6447 37 1 7.2195 4.1999 -0.1284 38 1 7.2946 5.7141 0.8047 39 1 5.6805 6.8504 0.1295 40 1 5.5604 9.2917 0.1023 41 1 2.1547 11.2684 4.0191 42 1 4.0652 9.2386 4.1449 43 1 4.2041 6.7982 4.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -33.244976 kcal Electronic energy + Delta-G solvation = -19993.278590 eV Core-core repulsion = 17002.789122 eV Total energy + Delta-G solvation = -2990.489468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.09665 -37.00761 -36.28559 -34.16604 -33.16248 -31.30562 -29.55300 -28.96898 -28.33621 -25.06856 -24.22581 -22.31188 -21.24697 -20.91705 -20.22313 -19.42200 -17.31937 -16.95443 -15.86371 -15.25697 -15.08084 -14.57265 -14.14600 -13.96517 -13.77729 -13.72019 -13.20859 -12.82828 -12.61510 -12.42833 -12.24000 -11.91936 -11.84611 -11.71645 -11.45664 -11.33332 -11.22928 -11.21917 -11.06686 -10.83590 -10.73603 -10.55514 -10.36187 -9.90828 -9.71827 -9.29344 -9.05396 -9.04125 -7.61082 -6.92262 -6.63815 -4.24037 2.16891 2.80617 2.97654 3.11406 3.16600 3.22344 3.99464 4.22911 4.63382 4.69250 4.75891 4.89414 5.03630 5.10077 5.24358 5.42634 5.43845 5.46451 5.58322 5.59465 5.69219 5.69496 5.77426 5.81887 5.86434 5.96356 6.08774 6.10599 6.14208 6.19512 6.27972 6.37251 6.69009 6.74526 6.86629 7.01493 7.15548 7.24168 7.51378 7.60146 7.82381 8.04799 8.24771 8.50679 8.70206 8.95004 9.02494 10.31100 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.003061 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.173159 B = 9144.512126 C = 9927.133057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.088 4.088 5 C -0.150 4.150 6 C -0.142 4.142 7 C 0.116 3.884 8 H 0.067 0.933 9 C -0.173 4.173 10 O -0.320 6.320 11 C 0.002 3.998 12 C -0.173 4.173 13 C -0.192 4.192 14 C 0.085 3.915 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.809 5.809 19 Si 0.909 3.091 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.278 0.722 42 H 0.127 0.873 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 -15.353 -5.416 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.125 4.125 5 C -0.168 4.168 6 C -0.160 4.160 7 C 0.059 3.941 8 H 0.085 0.915 9 C -0.230 4.230 10 O -0.236 6.236 11 C -0.041 4.041 12 C -0.192 4.192 13 C -0.212 4.212 14 C 0.083 3.917 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.436 5.436 19 Si 0.734 3.266 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.145 4.145 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.360 -15.431 -5.116 16.261 hybrid contribution -0.022 0.969 -0.139 0.979 sum -0.381 -14.462 -5.256 15.392 Atomic orbital electron populations 1.21782 0.95934 1.01405 1.02009 1.21542 0.95873 0.96971 1.01825 1.21582 0.94708 0.96607 1.02645 1.20688 0.95663 0.94017 1.02164 1.22865 0.96960 0.97414 0.99592 1.22689 0.98484 0.95907 0.98920 1.21072 0.94403 0.90437 0.88155 0.91488 1.22308 0.95887 1.03105 1.01746 1.85916 1.85896 1.18471 1.33294 1.18638 1.08504 0.80405 0.96572 1.20459 1.06868 0.95331 0.96550 1.20630 1.09900 0.92658 0.98009 1.17610 0.90427 0.93609 0.90067 1.19467 1.15369 0.91559 1.23107 0.90682 1.25848 0.94054 1.00669 0.93790 1.69812 1.10605 1.37748 1.25457 0.86247 0.79016 0.82492 0.78815 1.18620 1.20136 1.19880 1.21023 1.02936 0.91385 0.99155 1.19873 1.04203 0.94443 0.95899 0.92942 0.92614 0.92750 0.92186 0.92093 0.91574 0.91846 0.91281 0.91575 0.87285 0.86991 0.91995 0.92090 0.91351 0.88537 0.88749 0.91154 0.85526 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.12 5.20 -26.73 -0.14 -1.26 16 4 C -0.09 -0.86 5.66 -27.88 -0.16 -1.02 16 5 C -0.15 -1.82 9.12 -36.02 -0.33 -2.15 16 6 C -0.14 -1.97 8.75 -36.02 -0.32 -2.28 16 7 C 0.12 1.93 2.60 -27.88 -0.07 1.85 16 8 H 0.07 1.14 5.99 -51.93 -0.31 0.83 16 9 C -0.17 -2.53 9.11 37.16 0.34 -2.19 16 10 O -0.32 -6.70 9.78 -18.71 -0.18 -6.88 16 11 C 0.00 0.05 6.61 -38.78 -0.26 -0.21 16 12 C -0.17 -3.95 8.10 -39.83 -0.32 -4.28 16 13 C -0.19 -4.77 9.74 -39.25 -0.38 -5.15 16 14 C 0.09 2.30 5.55 -106.80 -0.59 1.71 16 15 C -0.46 -12.48 9.05 -37.84 -0.34 -12.82 16 16 H 0.08 1.94 7.87 -52.48 -0.41 1.53 16 17 C 0.07 1.83 5.24 -17.34 -0.09 1.74 16 18 N -0.81 -21.32 10.86 55.54 0.60 -20.72 16 19 Si 0.91 19.05 29.57 -169.99 -5.03 14.02 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.13 -3.33 8.60 -39.25 -0.34 -3.66 16 24 C -0.13 -3.09 9.92 -39.83 -0.40 -3.48 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 34 H 0.11 1.32 7.83 -52.48 -0.41 0.91 16 35 H 0.11 1.45 7.84 -52.48 -0.41 1.04 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 39 H 0.10 1.92 5.36 -52.48 -0.28 1.64 16 40 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.13 3.44 6.23 -52.49 -0.33 3.11 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -28.10 352.16 -9.60 -37.71 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.12 Total: 5.75 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: -3.18 Total: -35.19 kcal Atomic # 7 Polarization: -21.32 SS G_CDS: 0.60 Total: -20.72 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.18 Total: -6.88 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.10 -9.60 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.462 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds