Wall clock time and date at job start Mon Mar 30 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47585 * 2 1 4 4 C 1.53002 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.30994 * 120.00092 * 124.99911 * 5 4 3 7 7 C 1.50699 * 119.99835 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47024 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47064 * 239.99724 * 7 6 5 10 10 O 1.42908 * 109.47155 * 119.99942 * 7 6 5 11 11 C 1.35670 * 116.99516 * 203.23644 * 10 7 6 12 12 C 1.39311 * 119.82678 * 355.53128 * 11 10 7 13 13 C 1.36431 * 120.19058 * 180.25291 * 12 11 10 14 14 C 1.40843 * 119.80746 * 359.49794 * 13 12 11 15 15 C 1.41211 * 120.17631 * 180.27302 * 14 13 12 16 16 H 1.08007 * 120.00326 * 331.10713 * 15 14 13 17 17 C 1.39887 * 120.00078 * 151.10399 * 15 14 13 18 18 N 1.30883 * 119.99621 * 348.96551 * 17 15 14 19 19 Si 1.86801 * 120.00437 * 168.96716 * 17 15 14 20 20 H 1.48498 * 109.46689 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47192 * 120.00020 * 19 17 15 22 22 H 1.48498 * 109.47199 * 240.00164 * 19 17 15 23 23 C 1.40826 * 119.64056 * 0.24979 * 14 13 12 24 24 C 1.36432 * 119.81761 * 0.02562 * 23 14 13 25 25 H 1.08992 * 109.48009 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47081 * 300.00274 * 1 2 3 27 27 H 1.09004 * 109.47112 * 59.99062 * 1 2 3 28 28 H 1.09006 * 109.47110 * 240.00218 * 2 1 3 29 29 H 1.08996 * 109.47386 * 120.00897 * 2 1 3 30 30 H 1.09003 * 109.46870 * 60.00488 * 3 2 1 31 31 H 1.08992 * 109.47226 * 300.00133 * 3 2 1 32 32 H 1.08998 * 109.46912 * 59.99870 * 4 3 2 33 33 H 1.09005 * 109.47166 * 300.00185 * 4 3 2 34 34 H 1.08004 * 119.99716 * 305.00594 * 5 4 3 35 35 H 1.08006 * 120.00287 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.47171 * 300.00091 * 9 7 6 37 37 H 1.09000 * 109.47026 * 60.00108 * 9 7 6 38 38 H 1.08998 * 109.47087 * 180.02562 * 9 7 6 39 39 H 1.08004 * 119.89872 * 0.02562 * 12 11 10 40 40 H 1.07995 * 120.09726 * 179.77048 * 13 12 11 41 41 H 0.97009 * 120.00084 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.09121 * 180.02562 * 23 14 13 43 43 H 1.08002 * 119.91268 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0725 2.8631 0.0000 6 6 4.9048 3.2631 0.9292 7 6 5.4067 4.6841 0.9301 8 1 4.9712 5.2238 0.0892 9 6 6.9315 4.6864 0.8036 10 8 5.0292 5.3219 2.1519 11 6 4.9551 6.6765 2.1422 12 6 5.3314 7.3829 1.0019 13 6 5.2647 8.7454 0.9857 14 6 4.8037 9.4374 2.1226 15 6 4.7260 10.8473 2.1123 16 1 5.4034 11.4211 1.4971 17 6 3.7717 11.5010 2.8990 18 7 2.8163 10.8152 3.4733 19 14 3.8610 13.3525 3.1297 20 1 5.0258 13.8890 2.3811 21 1 2.6143 13.9759 2.6176 22 1 4.0135 13.6647 4.5735 23 6 4.4202 8.7155 3.2693 24 6 4.4983 7.3534 3.2710 25 1 -0.3635 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.9329 0.9286 -0.8908 33 1 3.9338 0.9283 0.8891 34 1 3.7464 3.5516 -0.7656 35 1 5.2305 2.5748 1.6951 36 1 7.3667 4.1467 1.6447 37 1 7.2195 4.1999 -0.1284 38 1 7.2946 5.7141 0.8047 39 1 5.6805 6.8504 0.1295 40 1 5.5604 9.2917 0.1023 41 1 2.1547 11.2684 4.0191 42 1 4.0652 9.2386 4.1449 43 1 4.2041 6.7982 4.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:37 Heat of formation + Delta-G solvation = -44.734290 kcal Electronic energy + Delta-G solvation = -19993.776804 eV Core-core repulsion = 17002.789122 eV Total energy + Delta-G solvation = -2990.987682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76509 -38.54418 -37.39402 -35.44760 -34.80229 -32.49432 -31.33434 -30.87254 -29.28580 -26.87891 -25.24935 -23.74869 -22.74875 -22.08795 -21.64695 -20.57207 -19.22651 -18.61000 -17.08330 -16.86965 -16.32951 -15.95823 -15.74552 -15.24572 -14.94238 -14.73675 -14.59793 -14.19339 -14.10608 -13.80773 -13.61981 -13.29543 -13.12585 -12.99432 -12.92028 -12.80018 -12.60480 -12.38783 -12.19115 -11.99511 -11.90266 -11.73901 -11.58577 -11.43355 -11.33752 -11.13188 -10.91202 -10.08114 -9.55962 -8.84547 -8.54360 -6.24632 0.94074 1.02119 1.11954 1.40143 1.50965 1.55001 2.24344 2.74528 2.81804 3.68667 3.70144 3.96355 4.07157 4.11314 4.22382 4.22938 4.30399 4.35676 4.36651 4.54390 4.60261 4.68731 4.82811 4.84328 4.90291 4.96171 4.98956 5.03986 5.10443 5.16052 5.19022 5.24682 5.30525 5.31711 5.39504 5.49659 5.58931 5.65523 5.69368 5.83578 5.89389 6.06981 6.27470 6.58620 6.82959 6.97144 7.10904 8.42636 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.003061 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.173159 B = 9144.512126 C = 9927.133057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.132 4.132 6 C -0.164 4.164 7 C 0.107 3.893 8 H 0.062 0.938 9 C -0.168 4.168 10 O -0.331 6.331 11 C 0.012 3.988 12 C -0.169 4.169 13 C -0.202 4.202 14 C 0.052 3.948 15 C -0.499 4.499 16 H 0.075 0.925 17 C 0.029 3.971 18 N -0.841 5.841 19 Si 0.985 3.015 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.144 4.144 24 C -0.139 4.139 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.285 0.715 42 H 0.111 0.889 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 -16.573 -6.572 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.123 4.123 5 C -0.150 4.150 6 C -0.182 4.182 7 C 0.051 3.949 8 H 0.080 0.920 9 C -0.225 4.225 10 O -0.248 6.248 11 C -0.032 4.032 12 C -0.188 4.188 13 C -0.221 4.221 14 C 0.050 3.950 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.184 4.184 18 N -0.469 5.469 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.191 1.191 23 C -0.163 4.163 24 C -0.158 4.158 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.113 -16.681 -6.283 17.825 hybrid contribution -0.110 1.141 0.137 1.155 sum -0.224 -15.540 -6.146 16.713 Atomic orbital electron populations 1.21800 0.95852 1.02001 1.01673 1.21523 0.95953 0.95927 1.02518 1.21568 0.94552 0.97566 1.01834 1.20728 0.95637 0.92521 1.03387 1.23114 0.94899 0.98652 0.98338 1.22580 1.00510 0.94519 1.00544 1.21422 0.95858 0.91488 0.86096 0.91960 1.22270 0.94254 1.02466 1.03521 1.85910 1.85849 1.16903 1.36096 1.18698 1.06727 0.81780 0.96001 1.20720 1.05859 0.94723 0.97464 1.20869 1.09705 0.93683 0.97871 1.17959 0.91692 0.94364 0.90992 1.19712 1.16501 0.91959 1.24751 0.90717 1.26730 0.93100 1.05637 0.92890 1.69880 1.11233 1.39884 1.25943 0.85110 0.79193 0.76086 0.78973 1.18215 1.19284 1.19055 1.20938 1.04334 0.92207 0.98857 1.20042 1.04557 0.94107 0.97110 0.91907 0.93357 0.92729 0.91029 0.91832 0.93255 0.91849 0.89308 0.91050 0.87332 0.86133 0.91582 0.89193 0.92984 0.85484 0.87599 0.90452 0.87103 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.12 -1.69 5.93 30.59 0.18 -1.51 16 3 C -0.12 -2.01 5.20 30.59 0.16 -1.86 16 4 C -0.09 -1.44 5.66 29.85 0.17 -1.27 16 5 C -0.13 -2.91 9.12 25.65 0.23 -2.67 16 6 C -0.16 -4.22 8.75 25.65 0.22 -3.99 16 7 C 0.11 3.38 2.60 29.85 0.08 3.46 16 8 H 0.06 2.01 5.99 -2.39 -0.01 1.99 16 9 C -0.17 -4.56 9.11 71.98 0.66 -3.90 16 10 O -0.33 -13.62 9.78 -89.87 -0.88 -14.50 16 11 C 0.01 0.55 6.61 22.79 0.15 0.70 16 12 C -0.17 -7.63 8.10 22.11 0.18 -7.45 16 13 C -0.20 -10.10 9.74 22.49 0.22 -9.88 16 14 C 0.05 2.89 5.55 -21.28 -0.12 2.77 16 15 C -0.50 -27.52 9.05 23.40 0.21 -27.31 16 16 H 0.07 3.96 7.87 -2.91 -0.02 3.94 16 17 C 0.03 1.48 5.24 85.23 0.45 1.93 16 18 N -0.84 -45.45 10.86 21.82 0.24 -45.21 16 19 Si 0.99 39.32 29.57 68.60 2.03 41.35 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.14 -7.90 8.60 22.48 0.19 -7.70 16 24 C -0.14 -7.01 9.92 22.11 0.22 -6.79 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.16 7.79 -2.38 -0.02 1.14 16 34 H 0.11 2.40 7.83 -2.91 -0.02 2.38 16 35 H 0.12 2.89 7.84 -2.91 -0.02 2.87 16 36 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.57 6.77 -2.39 -0.02 1.56 16 39 H 0.13 4.86 5.36 -2.91 -0.02 4.84 16 40 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.29 13.93 8.30 -92.70 -0.77 13.16 16 42 H 0.11 6.32 6.23 -2.91 -0.02 6.30 16 43 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -61.20 352.16 6.26 -54.94 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.96 Total: 30.33 kcal Atomic # 6 Polarization: -70.83 SS G_CDS: 3.92 Total: -66.91 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.24 Total: -45.21 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.88 Total: -14.50 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -61.20 6.26 -54.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.204 kcal (2) G-P(sol) polarization free energy of solvation -61.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds