Wall clock time and date at job start Mon Mar 30 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50700 * 120.00195 * 2 1 4 4 C 1.31000 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.50700 * 120.00409 * 354.19450 * 4 2 1 6 6 C 1.53005 * 109.47036 * 118.89935 * 5 4 2 7 7 C 1.52998 * 109.46992 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47408 * 54.99999 * 7 6 5 9 9 C 1.52997 * 109.47244 * 175.00294 * 7 6 5 10 10 O 1.42906 * 109.47132 * 295.00286 * 7 6 5 11 11 C 1.35670 * 116.99828 * 155.98492 * 10 7 6 12 12 C 1.39319 * 119.81717 * 185.80319 * 11 10 7 13 13 C 1.36435 * 120.18445 * 180.25480 * 12 11 10 14 14 C 1.40823 * 119.81271 * 359.47639 * 13 12 11 15 15 C 1.41214 * 120.18062 * 180.29479 * 14 13 12 16 16 H 1.08003 * 120.00142 * 335.14985 * 15 14 13 17 17 C 1.39895 * 120.00410 * 155.15286 * 15 14 13 18 18 N 1.30884 * 119.99362 * 335.79652 * 17 15 14 19 19 Si 1.86794 * 120.00375 * 155.79331 * 17 15 14 20 20 H 1.48509 * 109.47135 * 94.98788 * 19 17 15 21 21 H 1.48493 * 109.47272 * 214.98697 * 19 17 15 22 22 H 1.48500 * 109.47059 * 334.98793 * 19 17 15 23 23 C 1.40839 * 119.64384 * 0.27592 * 14 13 12 24 24 C 1.36436 * 119.80545 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47597 * 264.22744 * 1 2 3 26 26 H 1.09002 * 109.47338 * 24.22581 * 1 2 3 27 27 H 1.09003 * 109.47254 * 144.22884 * 1 2 3 28 28 H 1.09001 * 109.47578 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46886 * 299.99888 * 3 2 1 30 30 H 1.08997 * 109.47501 * 59.99380 * 3 2 1 31 31 H 1.08005 * 119.99910 * 174.19234 * 4 2 1 32 32 H 1.09000 * 109.46492 * 358.90437 * 5 4 2 33 33 H 1.08991 * 109.47230 * 238.90421 * 5 4 2 34 34 H 1.09004 * 109.46671 * 60.00247 * 6 5 4 35 35 H 1.08998 * 109.47130 * 300.00428 * 6 5 4 36 36 H 1.08998 * 109.47277 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47415 * 300.00088 * 9 7 6 38 38 H 1.09002 * 109.47311 * 60.00041 * 9 7 6 39 39 H 1.08007 * 119.90369 * 0.03325 * 12 11 10 40 40 H 1.08000 * 120.09166 * 179.74651 * 13 12 11 41 41 H 0.96998 * 119.99421 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.09187 * 180.02562 * 23 14 13 43 43 H 1.08007 * 119.90431 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4143 -2.4362 0.1331 6 6 1.6528 -3.2907 -1.1135 7 6 0.8932 -4.6120 -0.9792 8 1 -0.1601 -4.4077 -0.7874 9 6 1.0296 -5.4127 -2.2757 10 8 1.4374 -5.3661 0.1059 11 6 0.6239 -6.2824 0.6882 12 6 1.0506 -6.9638 1.8261 13 6 0.2406 -7.8905 2.4148 14 6 -1.0343 -8.1495 1.8756 15 6 -1.8814 -9.1026 2.4823 16 1 -1.4592 -9.9009 3.0746 17 6 -3.2676 -9.0128 2.3160 18 7 -3.8194 -7.8600 2.0340 19 14 -4.3307 -10.5381 2.4966 20 1 -4.8580 -10.6127 3.8829 21 1 -5.4636 -10.4679 1.5392 22 1 -3.5156 -11.7462 2.2113 23 6 -1.4600 -7.4526 0.7281 24 6 -0.6358 -6.5327 0.1486 25 1 -0.3634 -0.1034 1.0225 26 1 -0.3634 0.9372 -0.4217 27 1 -0.3634 -0.8338 -0.6007 28 1 3.3321 1.1059 -0.0005 29 1 1.9972 1.8766 -0.8900 30 1 1.9971 1.8767 0.8899 31 1 3.2378 -1.1370 -0.0941 32 1 0.3482 -2.2339 0.2363 33 1 1.7695 -2.9712 1.0137 34 1 2.7190 -3.4929 -1.2168 35 1 1.2975 -2.7556 -1.9942 36 1 0.4888 -6.3543 -2.1799 37 1 0.6145 -4.8376 -3.1034 38 1 2.0830 -5.6171 -2.4675 39 1 2.0267 -6.7603 2.2411 40 1 0.5745 -8.4208 3.2944 41 1 -4.7806 -7.7977 1.9191 42 1 -2.4364 -7.6452 0.3088 43 1 -0.9605 -5.9976 -0.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:25 Heat of formation + Delta-G solvation = -31.389840 kcal Electronic energy + Delta-G solvation = -20515.963677 eV Core-core repulsion = 17525.554654 eV Total energy + Delta-G solvation = -2990.409023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.11220 -37.29110 -36.40261 -33.76788 -32.89778 -30.45576 -29.50882 -28.93106 -27.89516 -26.45303 -24.84434 -22.70691 -21.77597 -20.91302 -19.63792 -17.86731 -17.36253 -17.08205 -15.44207 -15.17891 -14.82946 -14.52084 -14.13339 -13.98505 -13.91852 -13.57952 -12.95986 -12.81178 -12.49676 -12.44449 -12.18218 -12.07995 -11.94127 -11.83357 -11.69427 -11.52111 -11.31730 -11.11603 -10.93350 -10.82451 -10.63608 -10.49621 -10.26862 -9.89429 -9.73104 -9.29012 -8.93487 -8.64064 -7.61386 -7.00184 -6.74253 -4.20150 2.17056 2.79833 2.98684 3.09075 3.13105 3.24665 3.96353 4.19390 4.61022 4.71390 4.89495 5.11975 5.18884 5.32276 5.38821 5.41688 5.51194 5.61677 5.67018 5.69295 5.74884 5.78029 5.85767 5.89001 5.94512 5.98011 6.15391 6.21071 6.27348 6.31405 6.40034 6.49866 6.70433 6.78788 6.94621 6.95716 7.09465 7.28667 7.45361 7.59493 7.93396 8.02568 8.18429 8.49856 8.69735 8.91901 9.03474 10.20486 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.003448 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.682085 B = 8118.637097 C = 8485.639757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 C -0.114 4.114 4 C -0.153 4.153 5 C -0.097 4.097 6 C -0.104 4.104 7 C 0.087 3.913 8 H 0.065 0.935 9 C -0.177 4.177 10 O -0.322 6.322 11 C -0.007 4.007 12 C -0.113 4.113 13 C -0.198 4.198 14 C 0.091 3.909 15 C -0.469 4.469 16 H 0.077 0.923 17 C 0.080 3.920 18 N -0.792 5.792 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.139 4.139 24 C -0.172 4.172 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.279 0.721 42 H 0.111 0.889 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 11.683 -6.162 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C -0.170 4.170 4 C -0.171 4.171 5 C -0.134 4.134 6 C -0.142 4.142 7 C 0.030 3.970 8 H 0.083 0.917 9 C -0.235 4.235 10 O -0.238 6.238 11 C -0.050 4.050 12 C -0.132 4.132 13 C -0.218 4.218 14 C 0.088 3.912 15 C -0.499 4.499 16 H 0.095 0.905 17 C -0.137 4.137 18 N -0.418 5.418 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.158 4.158 24 C -0.190 4.190 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.037 11.844 -6.145 14.646 hybrid contribution -0.824 -0.622 -0.043 1.033 sum 5.213 11.222 -6.189 13.836 Atomic orbital electron populations 1.20845 0.92483 1.02066 1.02219 1.21581 0.95841 0.94940 1.02328 1.20800 0.99320 0.95257 1.01652 1.22749 0.99286 0.93949 1.01156 1.20787 1.00299 0.93320 0.99017 1.21573 1.01184 0.93558 0.97877 1.22115 0.97848 0.90600 0.86469 0.91705 1.22354 1.02568 1.01363 0.97184 1.85857 1.40343 1.50435 1.47142 1.18528 0.91525 0.97231 0.97694 1.19627 0.99219 0.99153 0.95184 1.20570 0.97140 1.02553 1.01509 1.17550 0.91375 0.91565 0.90678 1.19415 0.90603 1.10907 1.28955 0.90466 1.25855 0.98875 0.96447 0.92572 1.69892 1.12718 1.24468 1.34706 0.86447 0.79426 0.82951 0.78781 1.19657 1.20112 1.18412 1.20774 0.99273 0.99187 0.96594 1.20622 0.94666 1.02474 1.01280 0.91613 0.92389 0.91319 0.92296 0.92115 0.91840 0.87645 0.91109 0.90011 0.91305 0.91010 0.91555 0.92243 0.92187 0.88674 0.88351 0.91000 0.87062 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.96 36.00 0.32 -0.91 16 2 C -0.15 -1.58 6.05 -101.07 -0.61 -2.19 16 3 C -0.11 -0.99 10.09 36.01 0.36 -0.62 16 4 C -0.15 -1.79 9.11 -36.03 -0.33 -2.12 16 5 C -0.10 -1.30 5.24 -27.88 -0.15 -1.45 16 6 C -0.10 -1.38 4.90 -26.73 -0.13 -1.51 16 7 C 0.09 1.41 2.23 -26.73 -0.06 1.35 16 8 H 0.07 1.11 6.36 -51.93 -0.33 0.78 16 9 C -0.18 -2.60 9.14 37.16 0.34 -2.26 16 10 O -0.32 -6.48 9.33 -18.71 -0.17 -6.66 16 11 C -0.01 -0.15 6.62 -38.78 -0.26 -0.41 16 12 C -0.11 -2.65 9.92 -39.83 -0.40 -3.05 16 13 C -0.20 -4.94 9.74 -39.25 -0.38 -5.32 16 14 C 0.09 2.43 5.55 -106.81 -0.59 1.84 16 15 C -0.47 -12.55 9.00 -37.83 -0.34 -12.89 16 16 H 0.08 1.99 7.95 -52.48 -0.42 1.57 16 17 C 0.08 2.03 4.97 -17.34 -0.09 1.95 16 18 N -0.79 -20.62 11.39 55.55 0.63 -19.99 16 19 Si 0.90 18.72 29.62 -169.99 -5.04 13.69 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.14 -3.61 8.67 -39.25 -0.34 -3.95 16 24 C -0.17 -4.02 8.12 -39.83 -0.32 -4.35 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.07 0.73 6.63 -51.93 -0.34 0.39 16 28 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.14 7.85 -52.48 -0.41 0.73 16 32 H 0.07 0.96 5.63 -51.93 -0.29 0.67 16 33 H 0.08 1.26 7.82 -51.93 -0.41 0.85 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.09 6.78 -51.93 -0.35 0.74 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 40 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.11 2.97 6.42 -52.49 -0.34 2.63 16 43 H 0.10 2.02 5.35 -52.48 -0.28 1.74 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -27.76 348.04 -9.24 -37.00 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.94 Total: 6.60 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: -2.97 Total: -35.88 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.63 Total: -19.99 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.17 Total: -6.66 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.04 Total: 13.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.76 -9.24 -37.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.606 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds