Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50700 * 120.00195 * 2 1 4 4 C 1.31000 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.50700 * 120.00409 * 354.19450 * 4 2 1 6 6 C 1.53005 * 109.47036 * 118.89935 * 5 4 2 7 7 C 1.52998 * 109.46992 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47408 * 54.99999 * 7 6 5 9 9 C 1.52997 * 109.47244 * 175.00294 * 7 6 5 10 10 O 1.42906 * 109.47132 * 295.00286 * 7 6 5 11 11 C 1.35670 * 116.99828 * 155.98492 * 10 7 6 12 12 C 1.39319 * 119.81717 * 185.80319 * 11 10 7 13 13 C 1.36435 * 120.18445 * 180.25480 * 12 11 10 14 14 C 1.40823 * 119.81271 * 359.47639 * 13 12 11 15 15 C 1.41214 * 120.18062 * 180.29479 * 14 13 12 16 16 H 1.08003 * 120.00142 * 335.14985 * 15 14 13 17 17 C 1.39895 * 120.00410 * 155.15286 * 15 14 13 18 18 N 1.30884 * 119.99362 * 335.79652 * 17 15 14 19 19 Si 1.86794 * 120.00375 * 155.79331 * 17 15 14 20 20 H 1.48509 * 109.47135 * 94.98788 * 19 17 15 21 21 H 1.48493 * 109.47272 * 214.98697 * 19 17 15 22 22 H 1.48500 * 109.47059 * 334.98793 * 19 17 15 23 23 C 1.40839 * 119.64384 * 0.27592 * 14 13 12 24 24 C 1.36436 * 119.80545 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47597 * 264.22744 * 1 2 3 26 26 H 1.09002 * 109.47338 * 24.22581 * 1 2 3 27 27 H 1.09003 * 109.47254 * 144.22884 * 1 2 3 28 28 H 1.09001 * 109.47578 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46886 * 299.99888 * 3 2 1 30 30 H 1.08997 * 109.47501 * 59.99380 * 3 2 1 31 31 H 1.08005 * 119.99910 * 174.19234 * 4 2 1 32 32 H 1.09000 * 109.46492 * 358.90437 * 5 4 2 33 33 H 1.08991 * 109.47230 * 238.90421 * 5 4 2 34 34 H 1.09004 * 109.46671 * 60.00247 * 6 5 4 35 35 H 1.08998 * 109.47130 * 300.00428 * 6 5 4 36 36 H 1.08998 * 109.47277 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47415 * 300.00088 * 9 7 6 38 38 H 1.09002 * 109.47311 * 60.00041 * 9 7 6 39 39 H 1.08007 * 119.90369 * 0.03325 * 12 11 10 40 40 H 1.08000 * 120.09166 * 179.74651 * 13 12 11 41 41 H 0.96998 * 119.99421 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.09187 * 180.02562 * 23 14 13 43 43 H 1.08007 * 119.90431 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4143 -2.4362 0.1331 6 6 1.6528 -3.2907 -1.1135 7 6 0.8932 -4.6120 -0.9792 8 1 -0.1601 -4.4077 -0.7874 9 6 1.0296 -5.4127 -2.2757 10 8 1.4374 -5.3661 0.1059 11 6 0.6239 -6.2824 0.6882 12 6 1.0506 -6.9638 1.8261 13 6 0.2406 -7.8905 2.4148 14 6 -1.0343 -8.1495 1.8756 15 6 -1.8814 -9.1026 2.4823 16 1 -1.4592 -9.9009 3.0746 17 6 -3.2676 -9.0128 2.3160 18 7 -3.8194 -7.8600 2.0340 19 14 -4.3307 -10.5381 2.4966 20 1 -4.8580 -10.6127 3.8829 21 1 -5.4636 -10.4679 1.5392 22 1 -3.5156 -11.7462 2.2113 23 6 -1.4600 -7.4526 0.7281 24 6 -0.6358 -6.5327 0.1486 25 1 -0.3634 -0.1034 1.0225 26 1 -0.3634 0.9372 -0.4217 27 1 -0.3634 -0.8338 -0.6007 28 1 3.3321 1.1059 -0.0005 29 1 1.9972 1.8766 -0.8900 30 1 1.9971 1.8767 0.8899 31 1 3.2378 -1.1370 -0.0941 32 1 0.3482 -2.2339 0.2363 33 1 1.7695 -2.9712 1.0137 34 1 2.7190 -3.4929 -1.2168 35 1 1.2975 -2.7556 -1.9942 36 1 0.4888 -6.3543 -2.1799 37 1 0.6145 -4.8376 -3.1034 38 1 2.0830 -5.6171 -2.4675 39 1 2.0267 -6.7603 2.2411 40 1 0.5745 -8.4208 3.2944 41 1 -4.7806 -7.7977 1.9191 42 1 -2.4364 -7.6452 0.3088 43 1 -0.9605 -5.9976 -0.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = -42.776665 kcal Electronic energy + Delta-G solvation = -20516.457447 eV Core-core repulsion = 17525.554654 eV Total energy + Delta-G solvation = -2990.902793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.75043 -38.64805 -37.75949 -35.43336 -34.35470 -31.80183 -31.25172 -30.74383 -28.66480 -27.45991 -26.68835 -23.95011 -23.33164 -22.69609 -21.17218 -19.27426 -18.88964 -18.59409 -17.13601 -16.36070 -16.23864 -15.88302 -15.77144 -15.28595 -14.95918 -14.84651 -14.45376 -14.33125 -14.05571 -13.75798 -13.52811 -13.21832 -13.21243 -13.18372 -12.80763 -12.78035 -12.68918 -12.57586 -12.40284 -12.21420 -12.06101 -11.73972 -11.68941 -11.45563 -11.34810 -11.09899 -10.79508 -9.54767 -9.52686 -8.90992 -8.62736 -6.19043 0.96357 1.04830 1.30120 1.38813 1.48419 1.56091 2.22414 2.66287 2.73376 3.69384 3.72957 4.02505 4.07394 4.13352 4.19717 4.29798 4.41049 4.42315 4.55531 4.61334 4.69102 4.74198 4.74895 4.84102 4.88614 4.95093 4.96014 4.99440 5.10409 5.13447 5.15328 5.16604 5.25822 5.27599 5.35576 5.38412 5.55917 5.69192 5.82919 5.99450 6.06254 6.09054 6.25709 6.57509 6.84032 6.95281 7.14484 8.34113 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.003448 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.682085 B = 8118.637097 C = 8485.639757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 C -0.114 4.114 4 C -0.169 4.169 5 C -0.094 4.094 6 C -0.095 4.095 7 C 0.077 3.923 8 H 0.054 0.946 9 C -0.173 4.173 10 O -0.327 6.327 11 C 0.005 3.995 12 C -0.122 4.122 13 C -0.208 4.208 14 C 0.058 3.942 15 C -0.506 4.506 16 H 0.075 0.925 17 C 0.040 3.960 18 N -0.825 5.825 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.159 4.159 24 C -0.172 4.172 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.288 0.712 42 H 0.097 0.903 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 12.831 -7.228 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C -0.171 4.171 4 C -0.187 4.187 5 C -0.131 4.131 6 C -0.132 4.132 7 C 0.021 3.979 8 H 0.072 0.928 9 C -0.230 4.230 10 O -0.243 6.243 11 C -0.039 4.039 12 C -0.141 4.141 13 C -0.228 4.228 14 C 0.056 3.944 15 C -0.536 4.536 16 H 0.093 0.907 17 C -0.175 4.175 18 N -0.451 5.451 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.179 4.179 24 C -0.190 4.190 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.411 13.011 -7.217 16.201 hybrid contribution -0.850 -0.810 0.237 1.197 sum 5.562 12.202 -6.980 15.117 Atomic orbital electron populations 1.20896 0.92419 1.02761 1.01972 1.21874 0.96166 0.95673 1.00431 1.20847 0.99408 0.94219 1.02599 1.22675 0.99635 0.93280 1.03112 1.20695 1.00110 0.94212 0.98113 1.21560 1.01107 0.91815 0.98741 1.22487 0.97759 0.91784 0.85904 0.92756 1.22323 1.03021 1.00499 0.97202 1.85863 1.40185 1.49917 1.48325 1.18627 0.91280 0.96864 0.97154 1.19905 1.00018 0.98737 0.95447 1.20766 0.96930 1.03083 1.01995 1.17896 0.92490 0.92511 0.91478 1.19655 0.91877 1.11552 1.30508 0.90695 1.26692 0.99644 0.99449 0.91720 1.69928 1.13541 1.26377 1.35237 0.85304 0.77451 0.78434 0.79190 1.18706 1.19046 1.18373 1.20747 0.99310 1.00662 0.97157 1.20798 0.94631 1.01854 1.01746 0.92099 0.90729 0.91875 0.91738 0.90829 0.91112 0.86798 0.91708 0.92628 0.90749 0.88487 0.93698 0.89181 0.91429 0.86470 0.87484 0.90177 0.88492 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.96 71.23 0.64 -1.71 16 2 C -0.14 -2.77 6.05 -16.49 -0.10 -2.87 16 3 C -0.11 -1.68 10.09 71.24 0.72 -0.96 16 4 C -0.17 -3.68 9.11 25.65 0.23 -3.44 16 5 C -0.09 -2.44 5.24 29.85 0.16 -2.29 16 6 C -0.10 -2.32 4.90 30.60 0.15 -2.17 16 7 C 0.08 2.39 2.23 30.59 0.07 2.46 16 8 H 0.05 1.81 6.36 -2.39 -0.02 1.80 16 9 C -0.17 -4.73 9.14 71.98 0.66 -4.07 16 10 O -0.33 -12.92 9.33 -89.87 -0.84 -13.76 16 11 C 0.00 0.22 6.62 22.79 0.15 0.37 16 12 C -0.12 -5.75 9.92 22.11 0.22 -5.54 16 13 C -0.21 -10.60 9.74 22.48 0.22 -10.38 16 14 C 0.06 3.24 5.55 -21.28 -0.12 3.12 16 15 C -0.51 -27.93 9.00 23.40 0.21 -27.72 16 16 H 0.07 3.99 7.95 -2.91 -0.02 3.97 16 17 C 0.04 2.06 4.97 85.24 0.42 2.48 16 18 N -0.82 -43.83 11.39 21.82 0.25 -43.58 16 19 Si 0.98 38.72 29.62 68.60 2.03 40.75 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.16 -8.54 8.67 22.49 0.19 -8.35 16 24 C -0.17 -8.14 8.12 22.11 0.18 -7.96 16 25 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.06 1.26 6.63 -2.39 -0.02 1.24 16 28 H 0.06 0.88 7.79 -2.39 -0.02 0.87 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 2.26 7.85 -2.91 -0.02 2.24 16 32 H 0.06 1.73 5.63 -2.39 -0.01 1.71 16 33 H 0.06 1.71 7.82 -2.39 -0.02 1.69 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.42 6.78 -2.39 -0.02 1.40 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 41 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 42 H 0.10 5.38 6.42 -2.91 -0.02 5.36 16 43 H 0.12 4.92 5.35 -2.91 -0.02 4.91 16 Total: -1.00 -60.58 348.04 6.42 -54.16 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.97 Total: 31.46 kcal Atomic # 6 Polarization: -73.04 SS G_CDS: 4.00 Total: -69.03 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.25 Total: -43.58 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.84 Total: -13.76 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -60.58 6.42 -54.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.388 kcal (2) G-P(sol) polarization free energy of solvation -60.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds