Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 H 1.09006 * 109.47330 * 304.99643 * 3 2 1 5 5 C 1.53000 * 109.47467 * 65.00298 * 3 2 1 6 6 C 1.52999 * 109.47106 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47043 * 299.99749 * 6 5 3 8 8 C 1.53000 * 109.46965 * 60.00164 * 7 6 5 9 9 C 1.52999 * 109.47106 * 299.99798 * 8 7 6 10 10 H 1.09000 * 109.46849 * 180.02562 * 9 8 7 11 11 O 1.42899 * 109.47374 * 300.00186 * 9 8 7 12 12 C 1.35644 * 117.00068 * 274.04786 * 11 9 8 13 13 C 1.38451 * 120.26607 * 5.35370 * 12 11 9 14 14 C 1.38298 * 120.05151 * 180.02562 * 13 12 11 15 15 C 1.38818 * 120.59225 * 0.02562 * 14 13 12 16 16 C 1.36490 * 120.53943 * 359.97438 * 15 14 13 17 17 C 1.40717 * 119.92750 * 0.02562 * 16 15 14 18 18 C 1.41163 * 120.29146 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00256 * 151.06504 * 18 17 16 20 20 C 1.39933 * 119.99751 * 331.06807 * 18 17 16 21 21 N 1.30858 * 119.99938 * 161.58979 * 20 18 17 22 22 Si 1.86807 * 119.99826 * 341.59059 * 20 18 17 23 23 H 1.48504 * 109.46954 * 92.77575 * 22 20 18 24 24 H 1.48499 * 109.46813 * 212.77571 * 22 20 18 25 25 H 1.48504 * 109.47084 * 332.77789 * 22 20 18 26 26 H 1.09002 * 109.47609 * 59.99619 * 1 2 3 27 27 H 1.08999 * 109.47573 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47149 * 300.00160 * 1 2 3 29 29 H 1.09002 * 109.46783 * 240.00192 * 2 1 3 30 30 H 1.09001 * 109.47117 * 119.99792 * 2 1 3 31 31 H 1.08998 * 109.47058 * 59.99935 * 5 3 2 32 32 H 1.08999 * 109.46937 * 299.99785 * 5 3 2 33 33 H 1.08998 * 109.46731 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47288 * 59.99986 * 6 5 3 35 35 H 1.09004 * 109.47040 * 299.99868 * 7 6 5 36 36 H 1.09001 * 109.47416 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46755 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46956 * 60.00488 * 8 7 6 39 39 H 1.08004 * 119.97073 * 0.05223 * 13 12 11 40 40 H 1.08005 * 119.70621 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.73255 * 180.27226 * 15 14 13 42 42 H 1.07997 * 120.03730 * 180.02562 * 16 15 14 43 43 H 0.97008 * 120.00036 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3074 6 6 2.1447 3.5693 1.3070 7 6 3.6695 3.5716 1.1809 8 6 4.0742 2.8876 -0.1264 9 6 3.5647 1.4449 -0.1261 10 1 3.8534 0.9574 -1.0573 11 8 4.1350 0.7386 0.9775 12 6 5.3540 0.1756 0.7847 13 6 6.0419 0.3888 -0.3977 14 6 7.2842 -0.1878 -0.5898 15 6 7.8537 -0.9834 0.3949 16 6 7.1968 -1.2096 1.5697 17 6 5.9315 -0.6340 1.7887 18 6 5.2456 -0.8624 3.0012 19 1 4.5605 -0.1195 3.3822 20 6 5.4534 -2.0512 3.7093 21 7 5.1228 -2.1263 4.9732 22 14 6.2027 -3.5312 2.8504 23 1 7.6755 -3.5208 3.0408 24 1 5.6377 -4.7772 3.4279 25 1 5.8907 -3.4721 1.3997 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5876 2.1491 32 1 0.5489 2.1253 1.3969 33 1 1.8568 4.0564 2.2386 34 1 1.7097 4.1080 0.4652 35 1 4.1045 3.0329 2.0228 36 1 4.0325 4.5994 1.1811 37 1 5.1605 2.8897 -0.2164 38 1 3.6392 3.4264 -0.9682 39 1 5.6082 1.0061 -1.1705 40 1 7.8161 -0.0175 -1.5142 41 1 8.8266 -1.4233 0.2320 42 1 7.6476 -1.8296 2.3305 43 1 5.2672 -2.9503 5.4643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -48.921275 kcal Electronic energy + Delta-G solvation = -22230.231289 eV Core-core repulsion = 19239.062045 eV Total energy + Delta-G solvation = -2991.169243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.76874 -37.72507 -35.46788 -33.67867 -33.52808 -30.66109 -29.71056 -29.02636 -28.28435 -24.95382 -23.67371 -22.66592 -21.22985 -20.80996 -20.23302 -19.01966 -17.45640 -16.66896 -15.54110 -15.20830 -14.96654 -14.43395 -14.21834 -13.94185 -13.62588 -13.52397 -13.06065 -12.89519 -12.67649 -12.48133 -12.27316 -11.87780 -11.74349 -11.49770 -11.25686 -11.13886 -10.99709 -10.81084 -10.68544 -10.54187 -10.40548 -10.29055 -10.11514 -9.78253 -9.62103 -9.51541 -9.43592 -9.04473 -7.67273 -7.08312 -6.87505 -4.30074 2.60911 2.71075 3.15008 3.25575 3.36196 4.03386 4.22909 4.56004 4.87391 4.98053 5.07578 5.34542 5.38321 5.43142 5.47039 5.58637 5.66640 5.71003 5.77516 5.87815 5.93430 5.96682 5.98697 6.07533 6.10906 6.19302 6.21241 6.28796 6.37374 6.45764 6.49221 6.57038 6.63180 6.65393 6.71190 6.80939 6.94250 7.05167 7.21484 7.57285 7.64815 7.86139 8.09443 8.32449 8.48098 8.85851 8.94422 10.14954 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.006996 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.873880 B = 4001.236637 C = 4633.166774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.073 0.927 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.141 4.141 9 C 0.091 3.909 10 H 0.061 0.939 11 O -0.287 6.287 12 C 0.035 3.965 13 C -0.174 4.174 14 C -0.217 4.217 15 C -0.104 4.104 16 C -0.226 4.226 17 C 0.079 3.921 18 C -0.427 4.427 19 H 0.095 0.905 20 C 0.082 3.918 21 N -0.809 5.809 22 Si 0.910 3.090 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.247 1.247 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 5.937 -8.228 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.092 0.908 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.179 4.179 9 C 0.033 3.967 10 H 0.079 0.921 11 O -0.202 6.202 12 C -0.009 4.009 13 C -0.193 4.193 14 C -0.236 4.236 15 C -0.122 4.122 16 C -0.246 4.246 17 C 0.076 3.924 18 C -0.456 4.456 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.434 5.434 22 Si 0.737 3.263 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.170 1.170 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.930 5.827 -7.773 11.382 hybrid contribution 0.547 -0.630 -0.545 0.997 sum -5.384 5.197 -8.319 11.189 Atomic orbital electron populations 1.21807 0.96413 1.01212 1.01283 1.21535 0.95030 0.96194 1.03138 1.21204 0.93104 0.96591 0.98440 0.90847 1.21576 0.99765 0.95401 0.98351 1.21504 0.96007 0.96898 1.00848 1.21416 0.95684 0.99519 0.98606 1.22051 1.01531 0.96201 0.98125 1.22177 0.92820 0.91423 0.90257 0.92074 1.86045 1.31079 1.66661 1.36376 1.19091 0.85808 1.01563 0.94485 1.20738 0.97009 1.04499 0.97073 1.20119 0.97433 1.06541 0.99550 1.20253 0.98344 0.99190 0.94454 1.20578 0.96078 1.08989 0.98925 1.17151 0.91596 0.91900 0.91795 1.19297 1.21770 1.03095 1.01394 0.88744 1.26133 0.92682 1.00747 0.93990 1.69714 1.37111 1.28530 1.08054 0.86366 0.78930 0.79041 0.81959 1.19731 1.22050 1.17007 0.93417 0.93090 0.92571 0.92511 0.90276 0.90386 0.92395 0.92396 0.92860 0.90681 0.92850 0.91375 0.91901 0.88137 0.89029 0.89058 0.87748 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.12 -1.80 5.19 -26.73 -0.14 -1.94 16 3 C -0.07 -1.08 2.02 -90.62 -0.18 -1.26 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 5 C -0.11 -1.62 4.81 -26.73 -0.13 -1.75 16 6 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16 7 C -0.11 -1.69 5.78 -26.73 -0.15 -1.85 16 8 C -0.14 -2.11 5.30 -26.73 -0.14 -2.25 16 9 C 0.09 1.51 1.85 -26.73 -0.05 1.46 16 10 H 0.06 1.02 6.25 -51.93 -0.32 0.70 16 11 O -0.29 -6.12 7.21 -18.63 -0.13 -6.26 16 12 C 0.04 0.82 6.64 -38.33 -0.25 0.57 16 13 C -0.17 -3.71 8.30 -39.48 -0.33 -4.03 16 14 C -0.22 -4.60 10.04 -39.34 -0.39 -4.99 16 15 C -0.10 -2.32 9.97 -40.00 -0.40 -2.71 16 16 C -0.23 -5.57 7.19 -39.28 -0.28 -5.86 16 17 C 0.08 2.04 5.14 -106.68 -0.55 1.49 16 18 C -0.43 -11.73 9.20 -37.84 -0.35 -12.08 16 19 H 0.09 2.76 7.88 -52.49 -0.41 2.35 16 20 C 0.08 2.20 5.41 -17.33 -0.09 2.10 16 21 N -0.81 -21.85 13.93 55.55 0.77 -21.07 16 22 Si 0.91 21.26 24.52 -169.99 -4.17 17.09 16 23 H -0.27 -6.14 6.57 56.52 0.37 -5.76 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.25 -5.93 6.96 56.52 0.39 -5.54 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.67 6.57 -51.93 -0.34 0.32 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.41 7.84 -51.93 -0.41 1.00 16 31 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 32 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.33 7.68 -51.93 -0.40 0.93 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.10 7.04 -51.93 -0.37 0.73 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.87 5.48 -52.48 -0.29 1.58 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.10 2.57 4.54 -52.49 -0.24 2.33 16 43 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -27.44 325.80 -8.78 -36.22 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.92 Total: 5.34 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: -3.24 Total: -36.24 kcal Atomic # 7 Polarization: -21.85 SS G_CDS: 0.77 Total: -21.07 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.13 Total: -6.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.17 Total: 17.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.44 -8.78 -36.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.700 kcal (2) G-P(sol) polarization free energy of solvation -27.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds