Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 H 1.09006 * 109.47330 * 304.99643 * 3 2 1 5 5 C 1.53000 * 109.47467 * 65.00298 * 3 2 1 6 6 C 1.52999 * 109.47106 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47043 * 299.99749 * 6 5 3 8 8 C 1.53000 * 109.46965 * 60.00164 * 7 6 5 9 9 C 1.52999 * 109.47106 * 299.99798 * 8 7 6 10 10 H 1.09000 * 109.46849 * 180.02562 * 9 8 7 11 11 O 1.42899 * 109.47374 * 300.00186 * 9 8 7 12 12 C 1.35644 * 117.00068 * 274.04786 * 11 9 8 13 13 C 1.38451 * 120.26607 * 5.35370 * 12 11 9 14 14 C 1.38298 * 120.05151 * 180.02562 * 13 12 11 15 15 C 1.38818 * 120.59225 * 0.02562 * 14 13 12 16 16 C 1.36490 * 120.53943 * 359.97438 * 15 14 13 17 17 C 1.40717 * 119.92750 * 0.02562 * 16 15 14 18 18 C 1.41163 * 120.29146 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00256 * 151.06504 * 18 17 16 20 20 C 1.39933 * 119.99751 * 331.06807 * 18 17 16 21 21 N 1.30858 * 119.99938 * 161.58979 * 20 18 17 22 22 Si 1.86807 * 119.99826 * 341.59059 * 20 18 17 23 23 H 1.48504 * 109.46954 * 92.77575 * 22 20 18 24 24 H 1.48499 * 109.46813 * 212.77571 * 22 20 18 25 25 H 1.48504 * 109.47084 * 332.77789 * 22 20 18 26 26 H 1.09002 * 109.47609 * 59.99619 * 1 2 3 27 27 H 1.08999 * 109.47573 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47149 * 300.00160 * 1 2 3 29 29 H 1.09002 * 109.46783 * 240.00192 * 2 1 3 30 30 H 1.09001 * 109.47117 * 119.99792 * 2 1 3 31 31 H 1.08998 * 109.47058 * 59.99935 * 5 3 2 32 32 H 1.08999 * 109.46937 * 299.99785 * 5 3 2 33 33 H 1.08998 * 109.46731 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47288 * 59.99986 * 6 5 3 35 35 H 1.09004 * 109.47040 * 299.99868 * 7 6 5 36 36 H 1.09001 * 109.47416 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46755 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46956 * 60.00488 * 8 7 6 39 39 H 1.08004 * 119.97073 * 0.05223 * 13 12 11 40 40 H 1.08005 * 119.70621 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.73255 * 180.27226 * 15 14 13 42 42 H 1.07997 * 120.03730 * 180.02562 * 16 15 14 43 43 H 0.97008 * 120.00036 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3074 6 6 2.1447 3.5693 1.3070 7 6 3.6695 3.5716 1.1809 8 6 4.0742 2.8876 -0.1264 9 6 3.5647 1.4449 -0.1261 10 1 3.8534 0.9574 -1.0573 11 8 4.1350 0.7386 0.9775 12 6 5.3540 0.1756 0.7847 13 6 6.0419 0.3888 -0.3977 14 6 7.2842 -0.1878 -0.5898 15 6 7.8537 -0.9834 0.3949 16 6 7.1968 -1.2096 1.5697 17 6 5.9315 -0.6340 1.7887 18 6 5.2456 -0.8624 3.0012 19 1 4.5605 -0.1195 3.3822 20 6 5.4534 -2.0512 3.7093 21 7 5.1228 -2.1263 4.9732 22 14 6.2027 -3.5312 2.8504 23 1 7.6755 -3.5208 3.0408 24 1 5.6377 -4.7772 3.4279 25 1 5.8907 -3.4721 1.3997 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5876 2.1491 32 1 0.5489 2.1253 1.3969 33 1 1.8568 4.0564 2.2386 34 1 1.7097 4.1080 0.4652 35 1 4.1045 3.0329 2.0228 36 1 4.0325 4.5994 1.1811 37 1 5.1605 2.8897 -0.2164 38 1 3.6392 3.4264 -0.9682 39 1 5.6082 1.0061 -1.1705 40 1 7.8161 -0.0175 -1.5142 41 1 8.8266 -1.4233 0.2320 42 1 7.6476 -1.8296 2.3305 43 1 5.2672 -2.9503 5.4643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -62.430704 kcal Electronic energy + Delta-G solvation = -22230.817101 eV Core-core repulsion = 19239.062045 eV Total energy + Delta-G solvation = -2991.755056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24343 -39.31903 -37.03992 -35.47657 -34.81287 -32.44855 -31.09503 -30.57759 -29.61384 -26.88040 -24.84882 -24.10328 -22.76296 -22.44400 -21.52671 -20.41692 -19.37416 -18.32142 -17.04279 -16.83106 -16.40844 -15.91679 -15.77644 -15.45845 -15.20915 -14.94753 -14.41265 -14.34547 -14.19744 -13.91605 -13.68864 -13.45668 -13.21234 -12.98230 -12.72069 -12.52846 -12.45859 -12.36956 -12.16150 -11.96459 -11.76367 -11.66172 -11.53573 -11.52444 -11.31319 -10.95489 -10.76902 -10.71613 -9.53654 -8.86967 -8.84561 -6.32978 0.75974 0.89347 1.23856 1.39200 1.46847 2.12372 2.63481 2.75055 3.51130 3.69022 3.79707 3.87677 4.14833 4.18114 4.28025 4.33525 4.39533 4.45133 4.49647 4.56648 4.61030 4.63491 4.75879 4.79198 4.85453 4.89746 4.95706 5.04075 5.10184 5.14918 5.21844 5.26505 5.30128 5.32265 5.35437 5.37236 5.46852 5.53131 5.65140 5.78728 5.80230 6.01083 6.22734 6.39874 6.54240 6.83925 7.20538 8.24182 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.006996 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.873880 B = 4001.236637 C = 4633.166774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.070 4.070 4 H 0.112 0.888 5 C -0.112 4.112 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.136 4.136 9 C 0.078 3.922 10 H 0.066 0.934 11 O -0.310 6.310 12 C 0.032 3.968 13 C -0.177 4.177 14 C -0.193 4.193 15 C -0.119 4.119 16 C -0.232 4.232 17 C 0.044 3.956 18 C -0.461 4.461 19 H 0.049 0.951 20 C 0.044 3.956 21 N -0.856 5.856 22 Si 0.965 3.035 23 H -0.256 1.256 24 H -0.279 1.279 25 H -0.258 1.258 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 7.072 -12.203 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.089 4.089 4 H 0.130 0.870 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.153 4.153 8 C -0.174 4.174 9 C 0.021 3.979 10 H 0.084 0.916 11 O -0.224 6.224 12 C -0.013 4.013 13 C -0.196 4.196 14 C -0.212 4.212 15 C -0.137 4.137 16 C -0.252 4.252 17 C 0.042 3.958 18 C -0.491 4.491 19 H 0.067 0.933 20 C -0.169 4.169 21 N -0.483 5.483 22 Si 0.789 3.211 23 H -0.182 1.182 24 H -0.206 1.206 25 H -0.182 1.182 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.117 0.883 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.785 6.973 -11.752 14.839 hybrid contribution 0.519 -0.806 0.480 1.072 sum -5.265 6.168 -11.272 13.886 Atomic orbital electron populations 1.21759 0.93984 1.01808 1.02524 1.21496 0.97190 0.96349 1.00865 1.21276 0.91547 0.96461 0.99567 0.87042 1.21538 1.00741 0.95895 0.96744 1.21492 0.94592 0.96093 1.02504 1.21407 0.96993 0.99911 0.97018 1.22042 1.00865 0.95141 0.99315 1.22619 0.94249 0.92120 0.88890 0.91578 1.86069 1.30406 1.66954 1.39004 1.19329 0.86741 1.00617 0.94650 1.21123 0.97158 1.04552 0.96785 1.20717 0.96750 1.03435 1.00283 1.20647 0.99735 0.99618 0.93675 1.20733 0.95695 1.08729 1.00029 1.17391 0.92552 0.93817 0.92088 1.19114 1.23061 1.03450 1.03505 0.93322 1.26777 0.93218 1.02527 0.94403 1.69752 1.39828 1.29608 1.09120 0.85525 0.79019 0.76514 0.80033 1.18168 1.20571 1.18216 0.90806 0.92982 0.92524 0.92445 0.94910 0.95161 0.90328 0.92024 0.89538 0.95341 0.90852 0.92729 0.88066 0.84923 0.84901 0.85686 0.88252 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.67 71.98 0.70 -2.57 16 2 C -0.12 -3.60 5.19 30.59 0.16 -3.44 16 3 C -0.07 -1.91 2.02 -10.79 -0.02 -1.93 16 4 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 5 C -0.11 -3.17 4.81 30.59 0.15 -3.02 16 6 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 7 C -0.12 -3.33 5.78 30.59 0.18 -3.16 16 8 C -0.14 -3.75 5.30 30.59 0.16 -3.59 16 9 C 0.08 2.50 1.85 30.59 0.06 2.56 16 10 H 0.07 2.05 6.25 -2.39 -0.01 2.03 16 11 O -0.31 -13.83 7.21 -89.58 -0.65 -14.47 16 12 C 0.03 1.52 6.64 23.08 0.15 1.68 16 13 C -0.18 -7.14 8.30 22.33 0.19 -6.95 16 14 C -0.19 -7.41 10.04 22.42 0.23 -7.19 16 15 C -0.12 -4.96 9.97 22.00 0.22 -4.74 16 16 C -0.23 -11.46 7.19 22.47 0.16 -11.29 16 17 C 0.04 2.38 5.14 -21.20 -0.11 2.27 16 18 C -0.46 -27.54 9.20 23.40 0.22 -27.32 16 19 H 0.05 3.21 7.88 -2.91 -0.02 3.19 16 20 C 0.04 2.47 5.41 85.25 0.46 2.93 16 21 N -0.86 -49.49 13.93 21.83 0.30 -49.19 16 22 Si 0.97 45.26 24.52 68.60 1.68 46.94 16 23 H -0.26 -11.26 6.57 99.48 0.65 -10.61 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.26 -12.40 6.96 99.48 0.69 -11.71 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.27 6.57 -2.38 -0.02 1.26 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 31 H 0.03 1.13 7.68 -2.39 -0.02 1.11 16 32 H 0.08 1.88 6.57 -2.39 -0.02 1.86 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 1.06 7.68 -2.39 -0.02 1.05 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.64 7.04 -2.38 -0.02 1.63 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.13 4.44 5.48 -2.91 -0.02 4.43 16 40 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.10 4.91 4.54 -2.91 -0.01 4.90 16 43 H 0.29 15.12 8.30 -92.70 -0.77 14.36 16 Total: -1.00 -65.58 325.80 5.32 -60.26 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.91 Total: 24.71 kcal Atomic # 6 Polarization: -71.32 SS G_CDS: 3.07 Total: -68.25 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.30 Total: -49.19 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.65 Total: -14.47 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.68 Total: 46.94 kcal Total: -65.58 5.32 -60.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.175 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds