Wall clock time and date at job start Mon Mar 30 2020 02:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47156 * 2 1 4 4 H 1.09006 * 109.47353 * 304.99915 * 3 2 1 5 5 C 1.52995 * 109.47407 * 65.00164 * 3 2 1 6 6 C 1.52995 * 109.47407 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47171 * 300.00179 * 6 5 3 8 8 C 1.52995 * 109.47101 * 59.99634 * 7 6 5 9 9 C 1.52995 * 109.47407 * 300.00221 * 8 7 6 10 10 H 1.09003 * 109.46890 * 300.00062 * 9 8 7 11 11 O 1.42896 * 109.47331 * 180.02562 * 9 8 7 12 12 C 1.35650 * 116.99964 * 84.04175 * 11 9 8 13 13 C 1.38445 * 120.26376 * 2.65129 * 12 11 9 14 14 C 1.38306 * 120.05132 * 180.02562 * 13 12 11 15 15 C 1.38828 * 120.58816 * 0.02562 * 14 13 12 16 16 C 1.36486 * 120.53774 * 359.97438 * 15 14 13 17 17 C 1.40718 * 119.93163 * 0.02562 * 16 15 14 18 18 C 1.41156 * 120.29058 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00574 * 209.53938 * 18 17 16 20 20 C 1.39934 * 120.00142 * 29.54217 * 18 17 16 21 21 N 1.30873 * 119.99748 * 10.49815 * 20 18 17 22 22 Si 1.86802 * 120.00135 * 190.49944 * 20 18 17 23 23 H 1.48497 * 109.47070 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46989 * 120.00175 * 22 20 18 25 25 H 1.48508 * 109.46977 * 239.99693 * 22 20 18 26 26 H 1.08992 * 109.47029 * 60.00143 * 1 2 3 27 27 H 1.08995 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46859 * 299.99665 * 1 2 3 29 29 H 1.09001 * 109.46936 * 239.99568 * 2 1 3 30 30 H 1.09004 * 109.47135 * 120.00525 * 2 1 3 31 31 H 1.09003 * 109.47039 * 300.00348 * 5 3 2 32 32 H 1.09003 * 109.47147 * 60.00095 * 5 3 2 33 33 H 1.09006 * 109.47353 * 59.99750 * 6 5 3 34 34 H 1.08997 * 109.47368 * 179.97438 * 6 5 3 35 35 H 1.08998 * 109.47069 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47017 * 299.99681 * 7 6 5 37 37 H 1.09008 * 109.46724 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.47028 * 60.00825 * 8 7 6 39 39 H 1.07997 * 119.97597 * 0.04271 * 13 12 11 40 40 H 1.08000 * 119.70839 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.72862 * 180.27380 * 15 14 13 42 42 H 1.08006 * 120.03556 * 180.02562 * 16 15 14 43 43 H 0.97002 * 119.99576 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1459 3.5688 1.3076 7 6 3.6707 3.5700 1.1821 8 6 4.0754 2.8860 -0.1252 9 6 3.5649 1.4437 -0.1255 10 1 3.9992 0.9044 0.7164 11 8 3.9434 0.8046 -1.3463 12 6 5.1894 0.2713 -1.4016 13 6 6.0145 0.3091 -0.2905 14 6 7.2843 -0.2355 -0.3520 15 6 7.7450 -0.8233 -1.5223 16 6 6.9518 -0.8739 -2.6318 17 6 5.6560 -0.3265 -2.5941 18 6 4.8290 -0.3751 -3.7370 19 1 4.0909 0.3958 -3.9028 20 6 4.9653 -1.4221 -4.6553 21 7 5.7066 -2.4594 -4.3597 22 14 4.0893 -1.3393 -6.3031 23 1 3.3201 -0.0722 -6.3916 24 1 5.0903 -1.3889 -7.3988 25 1 3.1606 -2.4914 -6.4284 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5490 2.1252 1.3969 32 1 2.0700 1.5875 2.1491 33 1 1.7116 4.1081 0.4657 34 1 1.8572 4.0562 2.2387 35 1 4.0345 4.5975 1.1827 36 1 4.1050 3.0308 2.0239 37 1 5.1618 2.8865 -0.2144 38 1 3.6412 3.4253 -0.9670 39 1 5.6663 0.7641 0.6249 40 1 7.9235 -0.2026 0.5179 41 1 8.7374 -1.2484 -1.5535 42 1 7.3183 -1.3335 -3.5379 43 1 5.8008 -3.1853 -4.9961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:39 Heat of formation + Delta-G solvation = -52.210221 kcal Electronic energy + Delta-G solvation = -21869.801957 eV Core-core repulsion = 18878.490094 eV Total energy + Delta-G solvation = -2991.311863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.61172 -37.65971 -35.57421 -33.76198 -33.48470 -30.20049 -29.31188 -28.90846 -28.10889 -25.05722 -23.70990 -22.59830 -20.99789 -20.47175 -20.20580 -19.43444 -17.37457 -16.58859 -15.58105 -14.91323 -14.72114 -14.31897 -14.14632 -14.04130 -13.80940 -13.32002 -13.08866 -12.85493 -12.65212 -12.32479 -12.18277 -11.86030 -11.46396 -11.33945 -11.29053 -11.09610 -10.93496 -10.84836 -10.79918 -10.63473 -10.44509 -10.27925 -10.16275 -9.89766 -9.63879 -9.44420 -9.25001 -9.14466 -7.37768 -6.89813 -6.57264 -4.18843 2.80633 3.05090 3.14419 3.20930 3.24175 4.04007 4.24536 4.74209 4.80104 4.87158 5.06341 5.23789 5.33219 5.45192 5.50338 5.59173 5.61945 5.66348 5.72070 5.80637 5.86535 5.90763 6.08000 6.12782 6.17309 6.18230 6.23947 6.27749 6.34859 6.35651 6.47959 6.51752 6.56341 6.69228 6.75386 7.01752 7.19797 7.37729 7.44869 7.80060 7.86982 8.12186 8.29211 8.50324 8.80634 8.95160 9.16869 10.34844 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.006303 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.190709 B = 4441.503908 C = 5484.555202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.143 4.143 9 C 0.093 3.907 10 H 0.062 0.938 11 O -0.298 6.298 12 C 0.023 3.977 13 C -0.184 4.184 14 C -0.208 4.208 15 C -0.133 4.133 16 C -0.137 4.137 17 C 0.094 3.906 18 C -0.445 4.445 19 H 0.080 0.920 20 C 0.070 3.930 21 N -0.809 5.809 22 Si 0.908 3.092 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.276 1.276 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 6.997 7.940 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.096 4.096 4 H 0.094 0.906 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.181 4.181 9 C 0.035 3.965 10 H 0.080 0.920 11 O -0.213 6.213 12 C -0.021 4.021 13 C -0.203 4.203 14 C -0.227 4.227 15 C -0.151 4.151 16 C -0.157 4.157 17 C 0.091 3.909 18 C -0.476 4.476 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.436 5.436 22 Si 0.733 3.267 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.201 1.201 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.726 6.770 7.681 12.250 hybrid contribution -0.134 -0.101 -0.449 0.480 sum -6.860 6.669 7.232 11.993 Atomic orbital electron populations 1.21800 0.96401 1.01203 1.01256 1.21530 0.95107 0.96169 1.03058 1.21157 0.93829 0.96721 0.97917 0.90625 1.21611 1.00633 0.95426 0.97273 1.21567 0.95939 0.96881 1.01404 1.21485 0.95730 1.00278 0.97794 1.22070 1.01811 0.96511 0.97695 1.22117 0.94186 0.91997 0.88192 0.92006 1.86007 1.30183 1.70306 1.34762 1.19254 0.84281 1.04108 0.94471 1.20638 0.96053 1.06883 0.96760 1.20161 0.96449 1.08386 0.97753 1.20392 0.98575 1.01782 0.94378 1.20908 0.92849 1.03817 0.98136 1.17082 0.92052 0.91874 0.89878 1.19399 1.16732 1.07781 1.03666 0.90237 1.25849 0.94650 0.94432 0.99519 1.69821 1.32982 1.05810 1.35021 0.86253 0.79634 0.79234 0.81530 1.18519 1.19968 1.20148 0.92882 0.93097 0.93115 0.90223 0.92557 0.91459 0.92059 0.91963 0.92291 0.92093 0.92173 0.91276 0.91410 0.88605 0.89517 0.89449 0.85837 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.12 -1.84 5.32 -26.73 -0.14 -1.98 16 3 C -0.08 -1.15 1.93 -90.62 -0.18 -1.32 16 4 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 5 C -0.11 -1.31 4.96 -26.74 -0.13 -1.44 16 6 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 7 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 8 C -0.14 -2.24 5.28 -26.74 -0.14 -2.39 16 9 C 0.09 1.62 1.56 -26.73 -0.04 1.58 16 10 H 0.06 1.11 5.97 -51.93 -0.31 0.80 16 11 O -0.30 -6.76 8.39 -18.65 -0.16 -6.91 16 12 C 0.02 0.58 6.60 -38.34 -0.25 0.33 16 13 C -0.18 -4.21 8.38 -39.48 -0.33 -4.54 16 14 C -0.21 -4.75 10.04 -39.34 -0.39 -5.14 16 15 C -0.13 -3.18 9.97 -40.00 -0.40 -3.58 16 16 C -0.14 -3.64 8.60 -39.28 -0.34 -3.98 16 17 C 0.09 2.56 5.55 -106.68 -0.59 1.97 16 18 C -0.45 -12.20 8.68 -37.84 -0.33 -12.53 16 19 H 0.08 2.17 7.71 -52.48 -0.40 1.77 16 20 C 0.07 1.82 5.25 -17.33 -0.09 1.73 16 21 N -0.81 -21.48 10.88 55.55 0.60 -20.88 16 22 Si 0.91 19.48 29.57 -169.99 -5.03 14.45 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 29 H 0.08 1.47 7.54 -51.93 -0.39 1.07 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.70 6.56 -51.93 -0.34 0.36 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.19 7.39 -51.92 -0.38 0.80 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.94 5.70 -52.49 -0.30 1.64 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.12 3.36 6.27 -52.48 -0.33 3.03 16 43 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -27.97 333.35 -9.88 -37.85 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.01 Total: 6.30 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -3.32 Total: -35.84 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.60 Total: -20.88 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.16 Total: -6.91 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.97 -9.88 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.356 kcal (2) G-P(sol) polarization free energy of solvation -27.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds