Wall clock time and date at job start Mon Mar 30 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47156 * 2 1 4 4 H 1.09006 * 109.47353 * 304.99915 * 3 2 1 5 5 C 1.52995 * 109.47407 * 65.00164 * 3 2 1 6 6 C 1.52995 * 109.47407 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47171 * 300.00179 * 6 5 3 8 8 C 1.52995 * 109.47101 * 59.99634 * 7 6 5 9 9 C 1.52995 * 109.47407 * 300.00221 * 8 7 6 10 10 H 1.09003 * 109.46890 * 300.00062 * 9 8 7 11 11 O 1.42896 * 109.47331 * 180.02562 * 9 8 7 12 12 C 1.35650 * 116.99964 * 84.04175 * 11 9 8 13 13 C 1.38445 * 120.26376 * 2.65129 * 12 11 9 14 14 C 1.38306 * 120.05132 * 180.02562 * 13 12 11 15 15 C 1.38828 * 120.58816 * 0.02562 * 14 13 12 16 16 C 1.36486 * 120.53774 * 359.97438 * 15 14 13 17 17 C 1.40718 * 119.93163 * 0.02562 * 16 15 14 18 18 C 1.41156 * 120.29058 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00574 * 209.53938 * 18 17 16 20 20 C 1.39934 * 120.00142 * 29.54217 * 18 17 16 21 21 N 1.30873 * 119.99748 * 10.49815 * 20 18 17 22 22 Si 1.86802 * 120.00135 * 190.49944 * 20 18 17 23 23 H 1.48497 * 109.47070 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46989 * 120.00175 * 22 20 18 25 25 H 1.48508 * 109.46977 * 239.99693 * 22 20 18 26 26 H 1.08992 * 109.47029 * 60.00143 * 1 2 3 27 27 H 1.08995 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46859 * 299.99665 * 1 2 3 29 29 H 1.09001 * 109.46936 * 239.99568 * 2 1 3 30 30 H 1.09004 * 109.47135 * 120.00525 * 2 1 3 31 31 H 1.09003 * 109.47039 * 300.00348 * 5 3 2 32 32 H 1.09003 * 109.47147 * 60.00095 * 5 3 2 33 33 H 1.09006 * 109.47353 * 59.99750 * 6 5 3 34 34 H 1.08997 * 109.47368 * 179.97438 * 6 5 3 35 35 H 1.08998 * 109.47069 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47017 * 299.99681 * 7 6 5 37 37 H 1.09008 * 109.46724 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.47028 * 60.00825 * 8 7 6 39 39 H 1.07997 * 119.97597 * 0.04271 * 13 12 11 40 40 H 1.08000 * 119.70839 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.72862 * 180.27380 * 15 14 13 42 42 H 1.08006 * 120.03556 * 180.02562 * 16 15 14 43 43 H 0.97002 * 119.99576 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1459 3.5688 1.3076 7 6 3.6707 3.5700 1.1821 8 6 4.0754 2.8860 -0.1252 9 6 3.5649 1.4437 -0.1255 10 1 3.9992 0.9044 0.7164 11 8 3.9434 0.8046 -1.3463 12 6 5.1894 0.2713 -1.4016 13 6 6.0145 0.3091 -0.2905 14 6 7.2843 -0.2355 -0.3520 15 6 7.7450 -0.8233 -1.5223 16 6 6.9518 -0.8739 -2.6318 17 6 5.6560 -0.3265 -2.5941 18 6 4.8290 -0.3751 -3.7370 19 1 4.0909 0.3958 -3.9028 20 6 4.9653 -1.4221 -4.6553 21 7 5.7066 -2.4594 -4.3597 22 14 4.0893 -1.3393 -6.3031 23 1 3.3201 -0.0722 -6.3916 24 1 5.0903 -1.3889 -7.3988 25 1 3.1606 -2.4914 -6.4284 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5490 2.1252 1.3969 32 1 2.0700 1.5875 2.1491 33 1 1.7116 4.1081 0.4657 34 1 1.8572 4.0562 2.2387 35 1 4.0345 4.5975 1.1827 36 1 4.1050 3.0308 2.0239 37 1 5.1618 2.8865 -0.2144 38 1 3.6412 3.4253 -0.9670 39 1 5.6663 0.7641 0.6249 40 1 7.9235 -0.2026 0.5179 41 1 8.7374 -1.2484 -1.5535 42 1 7.3183 -1.3335 -3.5379 43 1 5.8008 -3.1853 -4.9961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:36 Heat of formation + Delta-G solvation = -64.581869 kcal Electronic energy + Delta-G solvation = -21870.338431 eV Core-core repulsion = 18878.490094 eV Total energy + Delta-G solvation = -2991.848338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.11097 -39.24205 -37.23435 -35.45141 -34.85734 -31.84401 -30.86516 -30.41186 -29.53769 -27.02785 -24.81496 -24.01827 -22.76481 -21.89878 -21.57691 -20.73356 -19.27200 -18.33964 -17.24275 -16.50375 -15.99836 -15.96516 -15.58871 -15.52211 -15.13041 -14.72702 -14.41522 -14.27677 -14.16579 -13.80272 -13.64049 -13.36099 -13.12991 -12.84373 -12.75950 -12.52178 -12.37545 -12.25244 -12.08993 -12.03660 -11.80285 -11.67986 -11.60066 -11.43526 -11.08549 -11.05674 -10.99033 -10.73947 -9.33678 -8.80638 -8.49865 -6.22758 0.93583 1.11799 1.36023 1.47655 1.51033 2.23560 2.72518 2.79174 3.63744 3.69382 3.78878 3.96369 4.13202 4.20746 4.25417 4.33825 4.40818 4.48667 4.50718 4.54129 4.57736 4.68394 4.74463 4.83204 4.90827 4.98105 5.08723 5.12687 5.17965 5.19088 5.23020 5.24896 5.29863 5.35507 5.37647 5.46364 5.48344 5.55983 5.57900 5.89608 5.93551 6.16236 6.33321 6.55566 6.84958 6.95576 7.29298 8.43158 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.006303 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.190709 B = 4441.503908 C = 5484.555202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.066 0.934 5 C -0.105 4.105 6 C -0.117 4.117 7 C -0.110 4.110 8 C -0.139 4.139 9 C 0.084 3.916 10 H 0.059 0.941 11 O -0.321 6.321 12 C 0.019 3.981 13 C -0.188 4.188 14 C -0.198 4.198 15 C -0.142 4.142 16 C -0.157 4.157 17 C 0.052 3.948 18 C -0.480 4.480 19 H 0.064 0.936 20 C 0.030 3.970 21 N -0.841 5.841 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.261 1.261 25 H -0.267 1.267 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 8.161 9.925 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.092 4.092 4 H 0.084 0.916 5 C -0.143 4.143 6 C -0.155 4.155 7 C -0.147 4.147 8 C -0.177 4.177 9 C 0.027 3.973 10 H 0.077 0.923 11 O -0.236 6.236 12 C -0.025 4.025 13 C -0.206 4.206 14 C -0.218 4.218 15 C -0.161 4.161 16 C -0.177 4.177 17 C 0.050 3.950 18 C -0.511 4.511 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.469 5.469 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.186 1.186 25 H -0.192 1.192 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.763 7.942 9.687 14.737 hybrid contribution 0.227 -0.430 -0.925 1.045 sum -7.536 7.513 8.762 13.784 Atomic orbital electron populations 1.21754 0.93897 1.01911 1.02438 1.21489 0.97337 0.96109 1.00915 1.21195 0.91571 0.96693 0.99777 0.91602 1.21608 1.02034 0.95623 0.94993 1.21575 0.94583 0.96409 1.02908 1.21483 0.97043 1.00722 0.95467 1.22026 1.00381 0.95487 0.99784 1.22520 0.96218 0.92551 0.85981 0.92283 1.85981 1.29295 1.70591 1.37754 1.19409 0.85331 1.03393 0.94412 1.20959 0.95951 1.06564 0.97151 1.20623 0.96611 1.06187 0.98330 1.20680 0.99457 1.01889 0.94057 1.20879 0.93287 1.04861 0.98658 1.17475 0.92809 0.93576 0.91178 1.19464 1.17582 1.08620 1.05436 0.91808 1.26638 0.95300 0.93523 1.02728 1.69873 1.34206 1.06406 1.36394 0.85206 0.78663 0.79138 0.76967 1.18766 1.18600 1.19159 0.93045 0.92728 0.90484 0.94754 0.92315 0.89308 0.91415 0.91926 0.89480 0.90485 0.91498 0.93238 0.92336 0.85865 0.85866 0.86957 0.87570 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.67 71.98 0.70 -2.64 16 2 C -0.12 -3.68 5.32 30.59 0.16 -3.51 16 3 C -0.07 -2.13 1.93 -10.80 -0.02 -2.15 16 4 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 5 C -0.11 -2.13 4.96 30.59 0.15 -1.98 16 6 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 7 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 8 C -0.14 -4.28 5.28 30.59 0.16 -4.12 16 9 C 0.08 2.94 1.56 30.59 0.05 2.99 16 10 H 0.06 2.08 5.97 -2.39 -0.01 2.07 16 11 O -0.32 -15.23 8.39 -89.64 -0.75 -15.98 16 12 C 0.02 1.00 6.60 23.08 0.15 1.15 16 13 C -0.19 -8.49 8.38 22.34 0.19 -8.30 16 14 C -0.20 -8.76 10.04 22.43 0.23 -8.54 16 15 C -0.14 -6.83 9.97 22.00 0.22 -6.61 16 16 C -0.16 -8.64 8.60 22.47 0.19 -8.45 16 17 C 0.05 2.98 5.55 -21.20 -0.12 2.86 16 18 C -0.48 -27.91 8.68 23.40 0.20 -27.70 16 19 H 0.06 3.74 7.71 -2.91 -0.02 3.72 16 20 C 0.03 1.61 5.25 85.25 0.45 2.05 16 21 N -0.84 -46.44 10.88 21.83 0.24 -46.20 16 22 Si 0.98 41.29 29.57 68.60 2.03 43.32 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.40 6.57 -2.38 -0.02 1.38 16 29 H 0.03 1.33 7.54 -2.39 -0.02 1.31 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.70 16 31 H 0.09 1.47 6.56 -2.39 -0.02 1.45 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.69 7.39 -2.38 -0.02 1.67 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.12 4.80 5.70 -2.91 -0.02 4.79 16 40 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.11 6.10 6.27 -2.91 -0.02 6.08 16 43 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 Total: -1.00 -64.18 333.35 5.56 -58.62 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.97 Total: 29.35 kcal Atomic # 6 Polarization: -72.18 SS G_CDS: 3.07 Total: -69.11 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.24 Total: -46.20 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.75 Total: -15.98 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -64.18 5.56 -58.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.961 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds