Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46729 * 2 1 4 4 C 1.53003 * 109.46928 * 119.99753 * 2 1 3 5 5 C 1.53004 * 109.46651 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47133 * 299.99870 * 5 4 2 7 7 C 1.53003 * 109.47246 * 60.00495 * 6 5 4 8 8 H 1.09004 * 109.47109 * 59.99642 * 7 6 5 9 9 O 1.42897 * 109.47349 * 180.02562 * 7 6 5 10 10 C 1.35645 * 116.99853 * 276.48371 * 9 7 6 11 11 C 1.38456 * 120.26408 * 5.96396 * 10 9 7 12 12 C 1.38303 * 120.04556 * 180.02562 * 11 10 9 13 13 C 1.38813 * 120.59566 * 359.97438 * 12 11 10 14 14 C 1.36491 * 120.53929 * 359.73310 * 13 12 11 15 15 C 1.40723 * 119.92702 * 0.54373 * 14 13 12 16 16 C 1.41147 * 120.28652 * 179.73660 * 15 14 13 17 17 H 1.08007 * 120.00012 * 204.70895 * 16 15 14 18 18 C 1.39935 * 120.00181 * 24.71843 * 16 15 14 19 19 N 1.30873 * 119.99771 * 215.29799 * 18 16 15 20 20 Si 1.86796 * 120.00234 * 35.29552 * 18 16 15 21 21 H 1.48502 * 109.47063 * 266.06938 * 20 18 16 22 22 H 1.48492 * 109.47270 * 146.07042 * 20 18 16 23 23 H 1.48492 * 109.46982 * 26.06516 * 20 18 16 24 24 C 1.52996 * 109.47205 * 239.99837 * 2 1 3 25 25 H 1.08994 * 109.47011 * 300.00230 * 1 2 3 26 26 H 1.08997 * 109.46844 * 60.00388 * 1 2 3 27 27 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46773 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46764 * 299.99759 * 3 2 1 30 30 H 1.08992 * 109.46838 * 59.99976 * 3 2 1 31 31 H 1.08995 * 109.46840 * 60.00274 * 4 2 1 32 32 H 1.08994 * 109.47077 * 300.00357 * 4 2 1 33 33 H 1.08997 * 109.46567 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.47235 * 60.00235 * 5 4 2 35 35 H 1.09004 * 109.47358 * 300.00290 * 6 5 4 36 36 H 1.09001 * 109.46942 * 180.02562 * 6 5 4 37 37 H 1.07994 * 119.97066 * 0.02562 * 11 10 9 38 38 H 1.08003 * 119.69914 * 179.97438 * 12 11 10 39 39 H 1.08001 * 119.73127 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.03489 * 180.26140 * 14 13 12 41 41 H 0.97002 * 119.99800 * 5.10779 * 19 18 16 42 42 H 1.09004 * 109.47129 * 60.00338 * 24 2 1 43 43 H 1.08995 * 109.47377 * 300.00224 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5706 -0.7203 -1.2489 8 1 3.9335 0.3075 -1.2487 9 8 4.0469 -1.3940 -2.4157 10 6 5.2970 -1.0820 -2.8397 11 6 6.1004 -0.2432 -2.0860 12 6 7.3741 0.0723 -2.5229 13 6 7.8605 -0.4455 -3.7155 14 6 7.0914 -1.2793 -4.4744 15 6 5.7899 -1.6106 -4.0541 16 6 4.9859 -2.4678 -4.8358 17 1 3.9097 -2.4170 -4.7597 18 6 5.5831 -3.3835 -5.7092 19 7 5.0134 -3.6633 -6.8537 20 14 7.1934 -4.2066 -5.2416 21 1 8.3275 -3.4327 -5.8074 22 1 7.2184 -5.5890 -5.7834 23 1 7.3146 -4.2524 -3.7624 24 6 2.0401 -0.7213 -1.2492 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 -1.7488 1.2493 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2340 2.1398 34 1 3.9330 0.3072 1.2498 35 1 3.7176 -2.4694 0.0002 36 1 5.1706 -1.4415 0.0008 37 1 5.7321 0.1649 -1.1565 38 1 7.9959 0.7275 -1.9308 39 1 8.8575 -0.1901 -4.0432 40 1 7.4795 -1.6809 -5.3988 41 1 4.2175 -3.1822 -7.1297 42 1 1.6768 -0.2074 -2.1392 43 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -52.311492 kcal Electronic energy + Delta-G solvation = -21867.890590 eV Core-core repulsion = 18876.574336 eV Total energy + Delta-G solvation = -2991.316254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.95497 -38.18412 -36.02563 -33.70067 -32.75454 -30.47309 -29.83204 -28.44293 -27.37966 -26.30612 -24.62964 -22.85627 -21.54579 -20.68636 -20.09826 -18.44207 -18.00939 -16.89680 -15.55977 -14.86830 -14.73933 -14.47116 -14.40587 -14.09035 -13.82218 -13.60155 -13.12938 -12.88026 -12.65436 -12.34282 -12.21350 -12.02460 -11.90006 -11.78288 -11.42192 -11.22764 -11.03446 -10.89629 -10.74718 -10.63191 -10.48589 -10.36010 -10.16659 -9.96951 -9.67186 -9.55409 -9.49570 -8.84178 -7.68752 -7.36421 -7.06328 -4.30601 2.71073 2.78660 3.26152 3.39856 3.57507 4.08380 4.10644 4.50101 4.65262 4.74017 4.90870 5.13751 5.24231 5.37081 5.40136 5.44228 5.53480 5.55343 5.65332 5.67231 5.72372 5.82717 5.93789 5.98964 6.00077 6.02250 6.08282 6.14519 6.19260 6.27436 6.30722 6.37718 6.41147 6.50993 6.62333 6.77964 7.00589 7.16239 7.54187 7.59599 7.67522 7.90097 8.06119 8.30873 8.56872 8.66897 9.01180 9.95068 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.005375 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.937864 B = 5207.952727 C = 5769.195032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.145 4.145 7 C 0.089 3.911 8 H 0.064 0.936 9 O -0.302 6.302 10 C 0.019 3.981 11 C -0.168 4.168 12 C -0.231 4.231 13 C -0.098 4.098 14 C -0.231 4.231 15 C 0.085 3.915 16 C -0.511 4.511 17 H 0.083 0.917 18 C 0.055 3.945 19 N -0.797 5.797 20 Si 1.058 2.942 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.102 4.102 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.290 0.710 42 H 0.067 0.933 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 5.440 12.633 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.183 4.183 7 C 0.032 3.968 8 H 0.082 0.918 9 O -0.216 6.216 10 C -0.025 4.025 11 C -0.187 4.187 12 C -0.250 4.250 13 C -0.117 4.117 14 C -0.250 4.250 15 C 0.082 3.918 16 C -0.538 4.538 17 H 0.101 0.899 18 C -0.168 4.168 19 N -0.417 5.417 20 Si 0.883 3.117 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.245 4.153 11.963 13.356 hybrid contribution -1.087 1.375 0.581 1.847 sum -5.332 5.528 12.544 14.708 Atomic orbital electron populations 1.21843 0.94463 1.01784 1.01579 1.20488 0.95234 0.95470 0.94908 1.22008 1.01666 0.95284 1.01492 1.21620 0.95680 1.00440 0.96841 1.21536 0.95492 1.00809 0.97663 1.22116 1.01593 1.00345 0.94235 1.22162 0.93798 0.95880 0.85006 0.91790 1.86002 1.29768 1.63165 1.42710 1.19107 0.85051 1.03162 0.95188 1.20712 0.96005 1.02213 0.99791 1.20060 0.96625 1.08738 0.99572 1.20262 0.97946 0.98210 0.95241 1.20542 0.96240 1.06302 1.01924 1.17131 0.92036 0.93971 0.88668 1.20371 0.95999 1.17799 1.19626 0.89883 1.27229 1.03624 0.94785 0.91113 1.70563 1.17744 1.36882 1.16552 0.83826 0.74003 0.75858 0.78054 1.19915 1.21142 1.19075 1.21579 0.93784 1.01303 0.97275 0.92743 0.92590 0.92610 0.91992 0.92625 0.92842 0.91861 0.92144 0.91990 0.91798 0.91314 0.91130 0.88335 0.89182 0.89077 0.87723 0.89916 0.91394 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.47 37.16 0.31 -1.08 16 2 C -0.06 -0.71 0.77 -154.50 -0.12 -0.82 16 3 C -0.15 -1.64 7.78 37.16 0.29 -1.35 16 4 C -0.11 -1.18 4.73 -26.73 -0.13 -1.31 16 5 C -0.12 -1.41 5.65 -26.73 -0.15 -1.56 16 6 C -0.15 -2.26 5.14 -26.73 -0.14 -2.40 16 7 C 0.09 1.55 1.85 -26.70 -0.05 1.50 16 8 H 0.06 1.12 4.73 -51.93 -0.25 0.87 16 9 O -0.30 -6.96 9.10 -18.64 -0.17 -7.13 16 10 C 0.02 0.47 6.62 -38.33 -0.25 0.22 16 11 C -0.17 -3.73 8.18 -39.48 -0.32 -4.05 16 12 C -0.23 -5.05 10.04 -39.34 -0.39 -5.44 16 13 C -0.10 -2.23 9.97 -40.00 -0.40 -2.63 16 14 C -0.23 -5.80 7.63 -39.27 -0.30 -6.10 16 15 C 0.09 2.27 5.13 -106.68 -0.55 1.72 16 16 C -0.51 -14.23 8.95 -37.84 -0.34 -14.56 16 17 H 0.08 2.44 7.81 -52.48 -0.41 2.03 16 18 C 0.06 1.47 5.10 -17.32 -0.09 1.38 16 19 N -0.80 -21.45 13.66 55.55 0.76 -20.70 16 20 Si 1.06 24.49 25.89 -169.99 -4.40 20.09 16 21 H -0.27 -6.01 6.61 56.52 0.37 -5.64 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.10 -1.52 4.38 -26.71 -0.12 -1.64 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.19 6.71 -51.93 -0.35 0.84 16 37 H 0.10 1.92 5.36 -52.49 -0.28 1.64 16 38 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.10 2.60 5.31 -52.49 -0.28 2.32 16 41 H 0.29 7.62 8.73 -40.82 -0.36 7.27 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -28.06 325.43 -8.47 -36.54 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.82 Total: 4.42 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: -2.74 Total: -38.13 kcal Atomic # 7 Polarization: -21.45 SS G_CDS: 0.76 Total: -20.70 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.17 Total: -7.13 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.40 Total: 20.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.06 -8.47 -36.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.774 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds