Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46729 * 2 1 4 4 C 1.53003 * 109.46928 * 119.99753 * 2 1 3 5 5 C 1.53004 * 109.46651 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47133 * 299.99870 * 5 4 2 7 7 C 1.53003 * 109.47246 * 60.00495 * 6 5 4 8 8 H 1.09004 * 109.47109 * 59.99642 * 7 6 5 9 9 O 1.42897 * 109.47349 * 180.02562 * 7 6 5 10 10 C 1.35645 * 116.99853 * 276.48371 * 9 7 6 11 11 C 1.38456 * 120.26408 * 5.96396 * 10 9 7 12 12 C 1.38303 * 120.04556 * 180.02562 * 11 10 9 13 13 C 1.38813 * 120.59566 * 359.97438 * 12 11 10 14 14 C 1.36491 * 120.53929 * 359.73310 * 13 12 11 15 15 C 1.40723 * 119.92702 * 0.54373 * 14 13 12 16 16 C 1.41147 * 120.28652 * 179.73660 * 15 14 13 17 17 H 1.08007 * 120.00012 * 204.70895 * 16 15 14 18 18 C 1.39935 * 120.00181 * 24.71843 * 16 15 14 19 19 N 1.30873 * 119.99771 * 215.29799 * 18 16 15 20 20 Si 1.86796 * 120.00234 * 35.29552 * 18 16 15 21 21 H 1.48502 * 109.47063 * 266.06938 * 20 18 16 22 22 H 1.48492 * 109.47270 * 146.07042 * 20 18 16 23 23 H 1.48492 * 109.46982 * 26.06516 * 20 18 16 24 24 C 1.52996 * 109.47205 * 239.99837 * 2 1 3 25 25 H 1.08994 * 109.47011 * 300.00230 * 1 2 3 26 26 H 1.08997 * 109.46844 * 60.00388 * 1 2 3 27 27 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46773 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46764 * 299.99759 * 3 2 1 30 30 H 1.08992 * 109.46838 * 59.99976 * 3 2 1 31 31 H 1.08995 * 109.46840 * 60.00274 * 4 2 1 32 32 H 1.08994 * 109.47077 * 300.00357 * 4 2 1 33 33 H 1.08997 * 109.46567 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.47235 * 60.00235 * 5 4 2 35 35 H 1.09004 * 109.47358 * 300.00290 * 6 5 4 36 36 H 1.09001 * 109.46942 * 180.02562 * 6 5 4 37 37 H 1.07994 * 119.97066 * 0.02562 * 11 10 9 38 38 H 1.08003 * 119.69914 * 179.97438 * 12 11 10 39 39 H 1.08001 * 119.73127 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.03489 * 180.26140 * 14 13 12 41 41 H 0.97002 * 119.99800 * 5.10779 * 19 18 16 42 42 H 1.09004 * 109.47129 * 60.00338 * 24 2 1 43 43 H 1.08995 * 109.47377 * 300.00224 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5706 -0.7203 -1.2489 8 1 3.9335 0.3075 -1.2487 9 8 4.0469 -1.3940 -2.4157 10 6 5.2970 -1.0820 -2.8397 11 6 6.1004 -0.2432 -2.0860 12 6 7.3741 0.0723 -2.5229 13 6 7.8605 -0.4455 -3.7155 14 6 7.0914 -1.2793 -4.4744 15 6 5.7899 -1.6106 -4.0541 16 6 4.9859 -2.4678 -4.8358 17 1 3.9097 -2.4170 -4.7597 18 6 5.5831 -3.3835 -5.7092 19 7 5.0134 -3.6633 -6.8537 20 14 7.1934 -4.2066 -5.2416 21 1 8.3275 -3.4327 -5.8074 22 1 7.2184 -5.5890 -5.7834 23 1 7.3146 -4.2524 -3.7624 24 6 2.0401 -0.7213 -1.2492 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 -1.7488 1.2493 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2340 2.1398 34 1 3.9330 0.3072 1.2498 35 1 3.7176 -2.4694 0.0002 36 1 5.1706 -1.4415 0.0008 37 1 5.7321 0.1649 -1.1565 38 1 7.9959 0.7275 -1.9308 39 1 8.8575 -0.1901 -4.0432 40 1 7.4795 -1.6809 -5.3988 41 1 4.2175 -3.1822 -7.1297 42 1 1.6768 -0.2074 -2.1392 43 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -66.221579 kcal Electronic energy + Delta-G solvation = -21868.493777 eV Core-core repulsion = 18876.574336 eV Total energy + Delta-G solvation = -2991.919441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.32971 -39.71631 -37.71148 -35.66279 -33.85540 -32.18383 -31.37264 -30.13742 -28.24747 -27.34078 -26.58140 -24.29310 -22.80512 -22.44532 -21.67955 -20.13386 -19.40969 -18.50098 -17.00750 -16.50761 -16.31073 -15.83480 -15.63073 -15.47797 -15.41381 -15.05817 -14.54120 -14.47000 -13.97241 -13.85003 -13.73439 -13.46602 -12.94360 -12.86418 -12.78597 -12.59480 -12.45027 -12.39028 -12.24805 -11.96243 -11.92032 -11.66828 -11.57724 -11.51190 -11.23070 -11.02699 -10.88836 -10.78753 -9.61726 -9.39215 -8.92049 -6.36195 0.81329 0.91696 1.37679 1.55081 1.74510 2.20178 2.53672 2.62154 3.47411 3.62574 3.69748 3.89092 4.05907 4.10730 4.16610 4.27171 4.34587 4.40191 4.42976 4.52546 4.59148 4.63800 4.76368 4.81548 4.90133 4.91604 5.00740 5.03109 5.05292 5.07771 5.14110 5.16590 5.23189 5.27137 5.34027 5.39644 5.43512 5.49894 5.58036 5.66918 5.80233 6.01677 6.12998 6.38724 6.56868 6.71683 7.17543 7.89656 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.005375 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.937864 B = 5207.952727 C = 5769.195032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.111 4.111 6 C -0.140 4.140 7 C 0.081 3.919 8 H 0.067 0.933 9 O -0.334 6.334 10 C 0.008 3.992 11 C -0.170 4.170 12 C -0.209 4.209 13 C -0.109 4.109 14 C -0.236 4.236 15 C 0.052 3.948 16 C -0.549 4.549 17 H 0.043 0.957 18 C 0.026 3.974 19 N -0.820 5.820 20 Si 1.091 2.909 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.100 4.100 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.280 0.720 42 H 0.051 0.949 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 7.249 15.734 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.178 4.178 7 C 0.025 3.975 8 H 0.085 0.915 9 O -0.249 6.249 10 C -0.036 4.036 11 C -0.189 4.189 12 C -0.228 4.228 13 C -0.127 4.127 14 C -0.255 4.255 15 C 0.049 3.951 16 C -0.578 4.578 17 H 0.061 0.939 18 C -0.191 4.191 19 N -0.442 5.442 20 Si 0.910 3.090 21 H -0.176 1.176 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.138 4.138 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.855 5.976 15.064 16.456 hybrid contribution -1.531 0.997 -0.209 1.839 sum -4.386 6.974 14.855 16.986 Atomic orbital electron populations 1.21831 0.93070 1.02068 1.02504 1.20491 0.96304 0.95497 0.93283 1.22008 1.01112 0.94840 1.02430 1.21632 0.94796 1.00620 0.97279 1.21530 0.96265 1.00957 0.96052 1.22068 1.00649 1.00002 0.95098 1.22537 0.95188 0.95722 0.84038 0.91491 1.85980 1.29432 1.64392 1.45110 1.19361 0.86028 1.03220 0.95040 1.21076 0.96030 1.01295 1.00484 1.20655 0.96316 1.06883 0.98898 1.20674 0.99369 0.97355 0.95263 1.20705 0.95872 1.06691 1.02261 1.17430 0.93171 0.94671 0.89792 1.20173 0.94237 1.20809 1.22549 0.93907 1.28232 1.05800 0.94534 0.90514 1.70627 1.18267 1.38049 1.17270 0.83423 0.71867 0.76260 0.77440 1.17639 1.19490 1.19806 1.21631 0.92184 1.01035 0.98903 0.90486 0.93000 0.92725 0.92807 0.93267 0.90387 0.92109 0.89339 0.90186 0.90791 0.92592 0.92485 0.85474 0.85074 0.85438 0.88020 0.90953 0.93005 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.47 71.98 0.61 -1.87 16 2 C -0.06 -1.19 0.77 -52.18 -0.04 -1.23 16 3 C -0.15 -2.90 7.78 71.98 0.56 -2.34 16 4 C -0.11 -1.99 4.73 30.60 0.14 -1.84 16 5 C -0.11 -2.33 5.65 30.59 0.17 -2.16 16 6 C -0.14 -4.25 5.14 30.59 0.16 -4.10 16 7 C 0.08 2.86 1.85 30.61 0.06 2.91 16 8 H 0.07 2.29 4.73 -2.39 -0.01 2.28 16 9 O -0.33 -16.10 9.10 -89.60 -0.82 -16.92 16 10 C 0.01 0.40 6.62 23.08 0.15 0.55 16 11 C -0.17 -7.20 8.18 22.34 0.18 -7.01 16 12 C -0.21 -8.29 10.04 22.42 0.23 -8.07 16 13 C -0.11 -4.59 9.97 22.00 0.22 -4.37 16 14 C -0.24 -11.73 7.63 22.47 0.17 -11.56 16 15 C 0.05 2.86 5.13 -21.20 -0.11 2.75 16 16 C -0.55 -32.68 8.95 23.40 0.21 -32.47 16 17 H 0.04 2.78 7.81 -2.91 -0.02 2.76 16 18 C 0.03 1.47 5.10 85.25 0.43 1.90 16 19 N -0.82 -46.57 13.66 21.83 0.30 -46.27 16 20 Si 1.09 50.15 25.89 68.60 1.78 51.93 16 21 H -0.25 -10.59 6.61 99.48 0.66 -9.94 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 24 C -0.10 -3.04 4.38 30.61 0.13 -2.90 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.14 4.81 -2.39 -0.01 1.13 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.44 6.43 -2.39 -0.02 1.43 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.86 6.71 -2.39 -0.02 1.84 16 37 H 0.13 4.58 5.36 -2.91 -0.02 4.57 16 38 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.10 5.03 5.31 -2.91 -0.02 5.01 16 41 H 0.28 15.88 8.73 -92.71 -0.81 15.07 16 42 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -64.33 325.43 5.43 -58.89 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.89 Total: 24.18 kcal Atomic # 6 Polarization: -75.09 SS G_CDS: 3.28 Total: -71.81 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.30 Total: -46.27 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.82 Total: -16.92 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.78 Total: 51.93 kcal Total: -64.33 5.43 -58.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.327 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds