Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46856 * 2 1 4 4 C 1.52997 * 109.47407 * 239.99676 * 2 1 3 5 5 C 1.53000 * 109.47059 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46990 * 59.99772 * 5 4 2 7 7 C 1.52998 * 109.47263 * 299.99475 * 6 5 4 8 8 H 1.08998 * 109.47066 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47509 * 300.00464 * 7 6 5 10 10 C 1.52999 * 109.46553 * 60.00709 * 7 6 5 11 11 O 1.42907 * 109.46960 * 179.97438 * 10 7 6 12 12 C 1.35638 * 117.00251 * 216.38035 * 11 10 7 13 13 C 1.38452 * 120.26232 * 2.03210 * 12 11 10 14 14 C 1.38307 * 120.04693 * 180.02562 * 13 12 11 15 15 C 1.38820 * 120.59484 * 359.97438 * 14 13 12 16 16 C 1.36493 * 120.53884 * 0.02562 * 15 14 13 17 17 C 1.40723 * 119.92393 * 359.67778 * 16 15 14 18 18 C 1.41155 * 120.28622 * 180.31988 * 17 16 15 19 19 H 1.08010 * 120.00059 * 205.62588 * 18 17 16 20 20 C 1.39929 * 120.00136 * 25.63113 * 18 17 16 21 21 N 1.30861 * 119.99994 * 16.48375 * 20 18 17 22 22 Si 1.86802 * 119.99979 * 196.48692 * 20 18 17 23 23 H 1.48492 * 109.47271 * 89.99864 * 22 20 18 24 24 H 1.48503 * 109.46843 * 209.99820 * 22 20 18 25 25 H 1.48508 * 109.47146 * 329.99712 * 22 20 18 26 26 H 1.08996 * 109.47426 * 300.00663 * 1 2 3 27 27 H 1.09001 * 109.47117 * 60.00330 * 1 2 3 28 28 H 1.09001 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47309 * 59.99637 * 4 2 1 30 30 H 1.09001 * 109.46915 * 299.99750 * 4 2 1 31 31 H 1.08992 * 109.47151 * 299.99676 * 5 4 2 32 32 H 1.08996 * 109.47077 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46908 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47427 * 60.00123 * 6 5 4 35 35 H 1.08996 * 109.47265 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.46988 * 299.99794 * 9 7 6 37 37 H 1.09008 * 109.47019 * 59.99737 * 9 7 6 38 38 H 1.08996 * 109.47999 * 59.99790 * 10 7 6 39 39 H 1.07999 * 119.97980 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.70188 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.73070 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.03551 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00273 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0006 7 6 3.5695 -0.7219 1.2497 8 1 3.9320 -1.2362 2.1398 9 6 4.0799 0.7204 1.2499 10 6 2.0395 -0.7215 1.2493 11 8 1.5631 -0.0482 2.4164 12 6 0.4402 -0.5408 2.9963 13 6 -0.1707 -1.6727 2.4839 14 6 -1.3158 -2.1708 3.0784 15 6 -1.8637 -1.5460 4.1904 16 6 -1.2813 -0.4288 4.7154 17 6 -0.1120 0.0935 4.1320 18 6 0.5004 1.2446 4.6727 19 1 1.1075 1.8792 4.0440 20 6 0.3211 1.5635 6.0233 21 7 -0.1278 0.6586 6.8553 22 14 0.7224 3.2809 6.6388 23 1 -0.4845 4.1395 6.5322 24 1 1.1556 3.2097 8.0574 25 1 1.8153 3.8589 5.8159 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -0.2076 -2.1392 30 1 1.6768 -1.7490 -1.2491 31 1 3.9337 0.3057 -1.2486 32 1 3.9334 -1.2361 -2.1384 33 1 5.1695 -1.4441 0.0006 34 1 3.7158 -2.4709 0.0005 35 1 3.7162 1.2344 2.1396 36 1 5.1699 0.7200 1.2502 37 1 3.7169 1.2344 0.3598 38 1 1.6757 -1.7490 1.2492 39 1 0.2467 -2.1665 1.6189 40 1 -1.7876 -3.0543 2.6744 41 1 -2.7581 -1.9472 4.6438 42 1 -1.7142 0.0506 5.5809 43 1 -0.2517 0.8795 7.7916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = -54.870971 kcal Electronic energy + Delta-G solvation = -22265.570957 eV Core-core repulsion = 19274.143716 eV Total energy + Delta-G solvation = -2991.427241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37419 -39.33025 -37.22473 -35.47034 -34.11045 -32.07500 -31.29647 -30.35609 -27.59437 -27.32982 -26.83471 -23.74908 -22.73380 -22.34634 -21.66387 -19.79336 -19.11924 -18.31009 -17.16017 -16.48606 -16.12604 -15.94054 -15.79671 -15.62396 -14.94653 -14.74198 -14.41641 -14.00201 -13.91901 -13.61258 -13.44597 -13.19443 -13.13288 -12.93383 -12.77798 -12.73855 -12.52642 -12.42491 -12.18214 -11.86215 -11.81888 -11.74002 -11.51797 -11.29770 -11.07308 -11.02890 -10.83392 -10.65691 -9.34369 -8.78771 -8.50672 -6.18507 0.95969 1.15669 1.36049 1.48973 1.50588 2.22877 2.75424 2.79747 3.66063 3.72048 3.81015 3.93014 4.16492 4.20761 4.23523 4.41268 4.45027 4.51126 4.56056 4.58191 4.70153 4.71506 4.77914 4.89108 4.93706 4.98241 5.07291 5.11779 5.16445 5.22212 5.24183 5.29746 5.32197 5.39658 5.41828 5.48752 5.50939 5.54590 5.65844 5.91860 5.95370 6.19729 6.35228 6.58234 6.86053 6.96488 7.33524 8.40020 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.006424 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.205403 B = 4357.786890 C = 5308.239503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.068 0.932 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.105 4.105 7 C -0.090 4.090 8 H 0.055 0.945 9 C -0.140 4.140 10 C 0.082 3.918 11 O -0.318 6.318 12 C 0.022 3.978 13 C -0.181 4.181 14 C -0.204 4.204 15 C -0.141 4.141 16 C -0.166 4.166 17 C 0.054 3.946 18 C -0.481 4.481 19 H 0.065 0.935 20 C 0.033 3.967 21 N -0.833 5.833 22 Si 0.976 3.024 23 H -0.261 1.261 24 H -0.267 1.267 25 H -0.264 1.264 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -2.110 -13.315 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.087 0.913 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.108 4.108 8 H 0.074 0.926 9 C -0.197 4.197 10 C 0.026 3.974 11 O -0.233 6.233 12 C -0.023 4.023 13 C -0.200 4.200 14 C -0.224 4.224 15 C -0.159 4.159 16 C -0.186 4.186 17 C 0.051 3.949 18 C -0.511 4.511 19 H 0.084 0.916 20 C -0.180 4.180 21 N -0.461 5.461 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.188 1.188 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.159 -1.989 -13.008 14.530 hybrid contribution -0.252 0.507 0.910 1.071 sum 5.907 -1.482 -12.099 13.545 Atomic orbital electron populations 1.21854 0.95681 1.01634 1.00921 1.21555 0.95453 1.00309 0.94763 0.91346 1.21552 0.96261 1.00510 0.95966 1.21602 0.94732 1.01434 0.97807 1.21533 1.01223 0.98826 0.92647 1.21230 0.92366 0.97895 0.99354 0.92626 1.21790 1.00849 0.95539 1.01494 1.22602 0.94609 0.96017 0.84177 1.85985 1.40164 1.55302 1.41893 1.19273 0.89576 0.95538 0.97878 1.20928 0.98924 0.97747 1.02356 1.20566 0.99348 1.02892 0.99546 1.20632 1.00413 0.97172 0.97695 1.20834 0.96277 0.99194 1.02280 1.17443 0.92240 0.93952 0.91218 1.19468 1.28270 1.08257 0.95094 0.91642 1.26642 0.92911 1.02031 0.96427 1.69884 1.35964 1.35150 1.05093 0.85293 0.79515 0.77590 0.77839 1.18591 1.19114 1.18781 0.95357 0.91450 0.92630 0.90303 0.91671 0.91353 0.89715 0.89901 0.91612 0.95043 0.91343 0.91405 0.91818 0.85740 0.86164 0.87285 0.87804 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 7.80 71.98 0.56 -4.03 16 2 C -0.10 -2.99 2.19 -10.79 -0.02 -3.01 16 3 H 0.07 2.11 6.43 -2.39 -0.02 2.10 16 4 C -0.11 -2.20 5.20 30.59 0.16 -2.04 16 5 C -0.12 -2.12 5.65 30.59 0.17 -1.95 16 6 C -0.10 -2.16 5.45 30.59 0.17 -1.99 16 7 C -0.09 -2.62 2.94 -10.80 -0.03 -2.65 16 8 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 9 C -0.14 -4.00 8.35 71.98 0.60 -3.40 16 10 C 0.08 2.84 1.74 30.60 0.05 2.90 16 11 O -0.32 -14.81 8.16 -89.52 -0.73 -15.54 16 12 C 0.02 1.12 5.28 23.08 0.12 1.24 16 13 C -0.18 -8.04 7.37 22.34 0.16 -7.87 16 14 C -0.20 -8.98 10.04 22.43 0.23 -8.75 16 15 C -0.14 -6.74 9.97 22.00 0.22 -6.53 16 16 C -0.17 -9.11 8.63 22.47 0.19 -8.92 16 17 C 0.05 3.06 5.58 -21.20 -0.12 2.94 16 18 C -0.48 -27.71 8.72 23.40 0.20 -27.51 16 19 H 0.07 3.81 7.66 -2.91 -0.02 3.79 16 20 C 0.03 1.75 5.16 85.25 0.44 2.19 16 21 N -0.83 -45.81 10.95 21.83 0.24 -45.57 16 22 Si 0.98 40.94 29.59 68.60 2.03 42.97 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 H 0.03 1.12 6.53 -2.39 -0.02 1.11 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.72 6.77 -2.39 -0.02 1.70 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.22 6.43 -2.39 -0.02 1.21 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.03 1.11 7.68 -2.39 -0.02 1.09 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.76 4.81 -2.38 -0.01 1.75 16 38 H 0.06 2.22 5.28 -2.39 -0.01 2.21 16 39 H 0.13 4.78 4.82 -2.91 -0.01 4.76 16 40 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.10 5.95 6.19 -2.91 -0.02 5.93 16 43 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 Total: -1.00 -63.30 322.22 5.64 -57.67 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.99 Total: 29.84 kcal Atomic # 6 Polarization: -72.49 SS G_CDS: 3.11 Total: -69.38 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.24 Total: -45.57 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.73 Total: -15.54 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -63.30 5.64 -57.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.794 kcal (2) G-P(sol) polarization free energy of solvation -63.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds