Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.52998 * 109.47336 * 119.99820 * 2 1 3 5 5 C 1.52994 * 109.47018 * 179.97438 * 4 2 1 6 6 C 1.52991 * 109.47488 * 299.99821 * 5 4 2 7 7 C 1.53003 * 109.47291 * 59.99843 * 6 5 4 8 8 H 1.09001 * 109.47544 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46479 * 59.99996 * 7 6 5 10 10 C 1.52994 * 109.46736 * 239.99880 * 2 1 3 11 11 O 1.42901 * 109.47421 * 60.00067 * 10 2 1 12 12 C 1.35638 * 116.99651 * 261.05328 * 11 10 2 13 13 C 1.38446 * 120.27081 * 2.96650 * 12 11 10 14 14 C 1.38311 * 120.05418 * 179.97438 * 13 12 11 15 15 C 1.38815 * 120.59161 * 0.02562 * 14 13 12 16 16 C 1.36495 * 120.53866 * 0.02562 * 15 14 13 17 17 C 1.40727 * 119.92649 * 359.97438 * 16 15 14 18 18 C 1.41159 * 120.28480 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99543 * 148.46368 * 18 17 16 20 20 C 1.39932 * 120.00149 * 328.45336 * 18 17 16 21 21 N 1.30864 * 120.00068 * 160.12916 * 20 18 17 22 22 Si 1.86799 * 120.00292 * 340.13552 * 20 18 17 23 23 H 1.48501 * 109.47307 * 91.22509 * 22 20 18 24 24 H 1.48497 * 109.47322 * 211.23295 * 22 20 18 25 25 H 1.48502 * 109.47123 * 331.22981 * 22 20 18 26 26 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46973 * 300.00170 * 1 2 3 28 28 H 1.08999 * 109.47466 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47096 * 59.99619 * 4 2 1 30 30 H 1.09001 * 109.47097 * 299.99933 * 4 2 1 31 31 H 1.09002 * 109.46753 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47022 * 60.00352 * 5 4 2 33 33 H 1.09000 * 109.47423 * 300.00286 * 6 5 4 34 34 H 1.08994 * 109.47658 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47344 * 300.00259 * 9 7 6 36 36 H 1.08997 * 109.47441 * 60.00647 * 9 7 6 37 37 H 1.09002 * 109.46888 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47481 * 299.99817 * 10 2 1 39 39 H 1.07998 * 119.97189 * 0.24922 * 13 12 11 40 40 H 1.08003 * 119.70287 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.73403 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.03565 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00384 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2488 6 6 4.0795 -1.4433 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 1 3.9321 -1.2366 -2.1396 9 6 4.0800 0.7201 -1.2499 10 6 2.0399 -0.7213 -1.2492 11 8 1.5636 -0.0477 -2.4160 12 6 0.4721 -0.5720 -3.0272 13 6 -0.1689 -1.6734 -2.4863 14 6 -1.2819 -2.2041 -3.1129 15 6 -1.7671 -1.6425 -4.2860 16 6 -1.1533 -0.5570 -4.8409 17 6 -0.0193 0.0010 -4.2219 18 6 0.6218 1.1232 -4.7895 19 1 1.1110 1.8451 -4.1524 20 6 0.6236 1.3003 -6.1776 21 7 0.8544 2.4838 -6.6860 22 14 0.2963 -0.1528 -7.3050 23 1 -1.1580 -0.2379 -7.5934 24 1 1.0432 0.0284 -8.5756 25 1 0.7434 -1.4042 -6.6421 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 1.6768 -0.2073 2.1392 31 1 3.9334 -1.2351 2.1391 32 1 3.9337 0.3058 1.2486 33 1 3.7159 -2.4709 -0.0001 34 1 5.1695 -1.4441 -0.0004 35 1 3.7170 1.2343 -0.3599 36 1 5.1699 0.7198 -1.2502 37 1 3.7170 1.2338 -2.1402 38 1 1.6766 -1.7489 -1.2492 39 1 0.1977 -2.1159 -1.5718 40 1 -1.7778 -3.0632 -2.6858 41 1 -2.6369 -2.0684 -4.7640 42 1 -1.5379 -0.1263 -5.7536 43 1 0.8552 2.6067 -7.6482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = -41.041016 kcal Electronic energy + Delta-G solvation = -22323.218512 eV Core-core repulsion = 19332.390983 eV Total energy + Delta-G solvation = -2990.827530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.04259 -37.93385 -35.74615 -33.53687 -32.95831 -30.91658 -30.21486 -28.78083 -26.44786 -26.01276 -24.88591 -22.57943 -21.42534 -20.76425 -20.34009 -18.48675 -17.43376 -16.93149 -15.62346 -14.99767 -14.76700 -14.74107 -14.32972 -14.02895 -13.68989 -13.56389 -13.01010 -12.65550 -12.54829 -12.29422 -12.17700 -11.90985 -11.78117 -11.65418 -11.48372 -11.31591 -10.94623 -10.86430 -10.70344 -10.61396 -10.53087 -10.23119 -10.12725 -9.94376 -9.67599 -9.48389 -9.42818 -9.00830 -7.65461 -7.05509 -6.85534 -4.28824 2.60805 2.70628 3.16589 3.25738 3.36822 4.05232 4.15213 4.56510 4.77839 4.84851 4.99177 5.25237 5.33380 5.39474 5.43389 5.49263 5.55675 5.67161 5.76105 5.90669 5.93417 5.95378 6.03425 6.05370 6.07349 6.11539 6.14751 6.24750 6.28507 6.34718 6.38956 6.55001 6.58982 6.66340 6.74007 6.77181 6.92157 7.05927 7.22793 7.56600 7.66072 7.86269 8.09913 8.33412 8.50364 8.87557 8.94707 10.17312 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.006401 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.163333 B = 4373.197612 C = 5070.894396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.090 4.090 8 H 0.074 0.926 9 C -0.145 4.145 10 C 0.091 3.909 11 O -0.292 6.292 12 C 0.038 3.962 13 C -0.175 4.175 14 C -0.214 4.214 15 C -0.106 4.106 16 C -0.221 4.221 17 C 0.077 3.923 18 C -0.433 4.433 19 H 0.094 0.906 20 C 0.084 3.916 21 N -0.811 5.811 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.249 1.249 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -6.041 11.150 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.108 4.108 8 H 0.092 0.908 9 C -0.202 4.202 10 C 0.034 3.966 11 O -0.206 6.206 12 C -0.007 4.007 13 C -0.194 4.194 14 C -0.233 4.233 15 C -0.125 4.125 16 C -0.240 4.240 17 C 0.074 3.926 18 C -0.461 4.461 19 H 0.112 0.888 20 C -0.133 4.133 21 N -0.436 5.436 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.218 1.218 25 H -0.173 1.173 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.081 -5.644 10.896 12.932 hybrid contribution -0.289 -0.754 -0.505 0.952 sum 3.792 -6.398 10.392 12.779 Atomic orbital electron populations 1.21928 0.94778 1.01850 1.02041 1.21583 0.96255 1.00680 0.94078 0.90325 1.21565 0.95294 1.00543 0.97436 1.21596 0.95834 1.01123 0.97415 1.21542 1.00177 0.98982 0.94170 1.21193 0.94026 0.97549 0.98065 0.90754 1.21845 0.99593 0.95887 1.02901 1.22251 0.93172 0.96366 0.84837 1.86053 1.43118 1.51891 1.39512 1.19120 0.89632 0.95246 0.96680 1.20774 0.98992 0.98894 1.00701 1.20132 1.00648 1.03297 0.99246 1.20274 0.99044 0.96910 0.96249 1.20643 0.98587 1.01619 1.03186 1.17158 0.92100 0.92981 0.90351 1.19259 1.29647 1.05182 0.92028 0.88816 1.26096 0.91616 0.96493 0.99137 1.69727 1.36292 1.22920 1.14623 0.86402 0.78713 0.83232 0.78311 1.19493 1.21847 1.17256 0.92792 0.93487 0.91276 0.92208 0.91999 0.92355 0.91508 0.92156 0.91757 0.92505 0.93517 0.91209 0.91326 0.87808 0.89015 0.89032 0.87625 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 7.80 37.16 0.29 -2.05 16 2 C -0.11 -1.59 2.19 -90.62 -0.20 -1.79 16 3 H 0.08 1.22 6.43 -51.93 -0.33 0.89 16 4 C -0.11 -1.30 5.20 -26.74 -0.14 -1.44 16 5 C -0.12 -1.31 5.65 -26.74 -0.15 -1.46 16 6 C -0.11 -1.28 5.45 -26.73 -0.15 -1.43 16 7 C -0.09 -1.32 2.94 -90.64 -0.27 -1.58 16 8 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 9 C -0.15 -2.12 8.35 37.16 0.31 -1.81 16 10 C 0.09 1.53 1.72 -26.76 -0.05 1.49 16 11 O -0.29 -6.36 8.18 -18.61 -0.15 -6.52 16 12 C 0.04 0.89 5.49 -38.33 -0.21 0.68 16 13 C -0.17 -3.68 7.43 -39.48 -0.29 -3.97 16 14 C -0.21 -4.48 10.04 -39.34 -0.39 -4.88 16 15 C -0.11 -2.35 9.97 -40.00 -0.40 -2.75 16 16 C -0.22 -5.43 7.30 -39.27 -0.29 -5.71 16 17 C 0.08 2.01 5.05 -106.68 -0.54 1.47 16 18 C -0.43 -12.01 9.15 -37.84 -0.35 -12.35 16 19 H 0.09 2.78 7.93 -52.49 -0.42 2.36 16 20 C 0.08 2.26 5.37 -17.33 -0.09 2.17 16 21 N -0.81 -22.07 13.93 55.55 0.77 -21.30 16 22 Si 0.91 21.31 24.73 -169.99 -4.20 17.11 16 23 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.05 0.82 6.65 -51.93 -0.35 0.48 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.31 6.64 -51.93 -0.34 0.97 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 38 H 0.07 1.16 5.34 -51.93 -0.28 0.89 16 39 H 0.10 1.93 4.59 -52.49 -0.24 1.68 16 40 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.59 4.98 -52.49 -0.26 2.33 16 43 H 0.28 6.99 8.30 -40.82 -0.34 6.66 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -27.76 317.70 -8.30 -36.06 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.60 Total: 5.27 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -2.91 Total: -35.41 kcal Atomic # 7 Polarization: -22.07 SS G_CDS: 0.77 Total: -21.30 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.15 Total: -6.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.20 Total: 17.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.76 -8.30 -36.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.985 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds