Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.52998 * 109.47336 * 119.99820 * 2 1 3 5 5 C 1.52994 * 109.47018 * 179.97438 * 4 2 1 6 6 C 1.52991 * 109.47488 * 299.99821 * 5 4 2 7 7 C 1.53003 * 109.47291 * 59.99843 * 6 5 4 8 8 H 1.09001 * 109.47544 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46479 * 59.99996 * 7 6 5 10 10 C 1.52994 * 109.46736 * 239.99880 * 2 1 3 11 11 O 1.42901 * 109.47421 * 60.00067 * 10 2 1 12 12 C 1.35638 * 116.99651 * 261.05328 * 11 10 2 13 13 C 1.38446 * 120.27081 * 2.96650 * 12 11 10 14 14 C 1.38311 * 120.05418 * 179.97438 * 13 12 11 15 15 C 1.38815 * 120.59161 * 0.02562 * 14 13 12 16 16 C 1.36495 * 120.53866 * 0.02562 * 15 14 13 17 17 C 1.40727 * 119.92649 * 359.97438 * 16 15 14 18 18 C 1.41159 * 120.28480 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99543 * 148.46368 * 18 17 16 20 20 C 1.39932 * 120.00149 * 328.45336 * 18 17 16 21 21 N 1.30864 * 120.00068 * 160.12916 * 20 18 17 22 22 Si 1.86799 * 120.00292 * 340.13552 * 20 18 17 23 23 H 1.48501 * 109.47307 * 91.22509 * 22 20 18 24 24 H 1.48497 * 109.47322 * 211.23295 * 22 20 18 25 25 H 1.48502 * 109.47123 * 331.22981 * 22 20 18 26 26 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46973 * 300.00170 * 1 2 3 28 28 H 1.08999 * 109.47466 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47096 * 59.99619 * 4 2 1 30 30 H 1.09001 * 109.47097 * 299.99933 * 4 2 1 31 31 H 1.09002 * 109.46753 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47022 * 60.00352 * 5 4 2 33 33 H 1.09000 * 109.47423 * 300.00286 * 6 5 4 34 34 H 1.08994 * 109.47658 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47344 * 300.00259 * 9 7 6 36 36 H 1.08997 * 109.47441 * 60.00647 * 9 7 6 37 37 H 1.09002 * 109.46888 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.47481 * 299.99817 * 10 2 1 39 39 H 1.07998 * 119.97189 * 0.24922 * 13 12 11 40 40 H 1.08003 * 119.70287 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.73403 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.03565 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00384 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2488 6 6 4.0795 -1.4433 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 1 3.9321 -1.2366 -2.1396 9 6 4.0800 0.7201 -1.2499 10 6 2.0399 -0.7213 -1.2492 11 8 1.5636 -0.0477 -2.4160 12 6 0.4721 -0.5720 -3.0272 13 6 -0.1689 -1.6734 -2.4863 14 6 -1.2819 -2.2041 -3.1129 15 6 -1.7671 -1.6425 -4.2860 16 6 -1.1533 -0.5570 -4.8409 17 6 -0.0193 0.0010 -4.2219 18 6 0.6218 1.1232 -4.7895 19 1 1.1110 1.8451 -4.1524 20 6 0.6236 1.3003 -6.1776 21 7 0.8544 2.4838 -6.6860 22 14 0.2963 -0.1528 -7.3050 23 1 -1.1580 -0.2379 -7.5934 24 1 1.0432 0.0284 -8.5756 25 1 0.7434 -1.4042 -6.6421 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 1.6768 -0.2073 2.1392 31 1 3.9334 -1.2351 2.1391 32 1 3.9337 0.3058 1.2486 33 1 3.7159 -2.4709 -0.0001 34 1 5.1695 -1.4441 -0.0004 35 1 3.7170 1.2343 -0.3599 36 1 5.1699 0.7198 -1.2502 37 1 3.7170 1.2338 -2.1402 38 1 1.6766 -1.7489 -1.2492 39 1 0.1977 -2.1159 -1.5718 40 1 -1.7778 -3.0632 -2.6858 41 1 -2.6369 -2.0684 -4.7640 42 1 -1.5379 -0.1263 -5.7536 43 1 0.8552 2.6067 -7.6482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = -55.301909 kcal Electronic energy + Delta-G solvation = -22323.836911 eV Core-core repulsion = 19332.390983 eV Total energy + Delta-G solvation = -2991.445928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.45850 -39.48141 -37.33380 -35.46946 -34.14809 -32.45382 -31.69235 -30.50437 -27.64914 -27.31277 -26.73633 -23.97593 -22.78256 -22.30770 -21.81105 -19.83439 -19.17849 -18.65287 -17.21023 -16.59521 -16.18641 -15.96076 -15.79903 -15.69843 -15.23650 -14.97707 -14.47362 -14.07229 -14.03981 -13.76176 -13.66807 -13.35450 -13.19254 -13.02040 -12.82573 -12.62565 -12.61075 -12.46793 -12.27897 -11.95726 -11.77036 -11.70281 -11.60380 -11.39720 -11.19356 -11.04071 -10.78180 -10.69537 -9.51454 -8.85425 -8.82113 -6.32986 0.76307 0.89304 1.24897 1.39295 1.46999 2.13598 2.64013 2.69205 3.48965 3.66239 3.75736 3.90613 4.12231 4.17238 4.21089 4.35040 4.40035 4.40163 4.49555 4.54755 4.60271 4.68937 4.75271 4.83353 4.87876 4.92096 4.95690 5.05737 5.09731 5.13646 5.21139 5.23631 5.27993 5.32812 5.35336 5.38534 5.43962 5.47862 5.64039 5.77807 5.81403 6.01081 6.23307 6.39777 6.55404 6.84901 7.19404 8.25861 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.006401 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.163333 B = 4373.197612 C = 5070.894396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.064 0.936 4 C -0.104 4.104 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.091 4.091 8 H 0.057 0.943 9 C -0.140 4.140 10 C 0.082 3.918 11 O -0.319 6.319 12 C 0.037 3.963 13 C -0.175 4.175 14 C -0.188 4.188 15 C -0.120 4.120 16 C -0.225 4.225 17 C 0.042 3.958 18 C -0.469 4.469 19 H 0.047 0.953 20 C 0.046 3.954 21 N -0.858 5.858 22 Si 0.962 3.038 23 H -0.253 1.253 24 H -0.276 1.276 25 H -0.261 1.261 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -9.515 13.570 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.082 0.918 4 C -0.142 4.142 5 C -0.157 4.157 6 C -0.141 4.141 7 C -0.110 4.110 8 H 0.076 0.924 9 C -0.198 4.198 10 C 0.026 3.974 11 O -0.234 6.234 12 C -0.008 4.008 13 C -0.194 4.194 14 C -0.207 4.207 15 C -0.138 4.138 16 C -0.245 4.245 17 C 0.039 3.961 18 C -0.500 4.500 19 H 0.065 0.935 20 C -0.167 4.167 21 N -0.485 5.485 22 Si 0.785 3.215 23 H -0.178 1.178 24 H -0.203 1.203 25 H -0.185 1.185 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.597 -9.120 13.330 16.547 hybrid contribution -0.184 0.206 -1.010 1.047 sum 3.413 -8.915 12.320 15.585 Atomic orbital electron populations 1.21872 0.95431 1.01945 1.00942 1.21559 0.95671 1.00206 0.94801 0.91802 1.21548 0.96118 1.00704 0.95807 1.21609 0.94903 1.01315 0.97897 1.21527 1.01200 0.98950 0.92448 1.21256 0.92580 0.97596 0.99563 0.92425 1.21793 1.00840 0.95870 1.01252 1.22656 0.94582 0.96256 0.83951 1.86053 1.42732 1.53196 1.41436 1.19324 0.90044 0.95453 0.96012 1.21125 0.98844 0.97811 1.01617 1.20735 0.99211 1.03014 0.97783 1.20667 1.00046 0.96240 0.96861 1.20784 0.98203 1.02371 1.03119 1.17392 0.93118 0.93390 0.92186 1.19089 1.32188 1.06232 0.92444 0.93491 1.26743 0.91483 0.98636 0.99827 1.69765 1.39142 1.24348 1.15294 0.85564 0.79501 0.79504 0.76895 1.17816 1.20283 1.18535 0.91936 0.91440 0.95508 0.91159 0.90341 0.89608 0.91700 0.91158 0.90042 0.91481 0.91432 0.95518 0.90946 0.84793 0.84791 0.85593 0.88186 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 7.80 71.98 0.56 -3.80 16 2 C -0.10 -2.94 2.19 -10.79 -0.02 -2.97 16 3 H 0.06 1.99 6.43 -2.39 -0.02 1.98 16 4 C -0.10 -2.07 5.20 30.59 0.16 -1.91 16 5 C -0.12 -2.09 5.65 30.59 0.17 -1.92 16 6 C -0.10 -2.07 5.45 30.59 0.17 -1.90 16 7 C -0.09 -2.63 2.94 -10.81 -0.03 -2.67 16 8 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 9 C -0.14 -4.20 8.35 71.98 0.60 -3.60 16 10 C 0.08 2.72 1.72 30.58 0.05 2.77 16 11 O -0.32 -14.63 8.18 -89.51 -0.73 -15.37 16 12 C 0.04 1.76 5.49 23.08 0.13 1.88 16 13 C -0.18 -6.99 7.43 22.34 0.17 -6.83 16 14 C -0.19 -7.14 10.04 22.43 0.23 -6.92 16 15 C -0.12 -4.96 9.97 22.00 0.22 -4.74 16 16 C -0.23 -11.05 7.30 22.47 0.16 -10.88 16 17 C 0.04 2.25 5.05 -21.20 -0.11 2.14 16 18 C -0.47 -28.21 9.15 23.40 0.21 -28.00 16 19 H 0.05 3.13 7.93 -2.91 -0.02 3.10 16 20 C 0.05 2.60 5.37 85.25 0.46 3.06 16 21 N -0.86 -49.86 13.93 21.83 0.30 -49.56 16 22 Si 0.96 45.19 24.73 68.60 1.70 46.88 16 23 H -0.25 -11.10 6.53 99.48 0.65 -10.45 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 26 H 0.06 1.74 6.65 -2.39 -0.02 1.72 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 1.01 6.64 -2.39 -0.02 1.00 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.18 6.43 -2.39 -0.02 1.17 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.83 4.81 -2.39 -0.01 1.82 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.00 7.68 -2.39 -0.02 0.98 16 38 H 0.07 2.31 5.34 -2.39 -0.01 2.30 16 39 H 0.13 4.49 4.59 -2.91 -0.01 4.48 16 40 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 42 H 0.10 4.93 4.98 -2.91 -0.01 4.92 16 43 H 0.29 15.17 8.30 -92.71 -0.77 14.40 16 Total: -1.00 -65.73 317.70 5.33 -60.40 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.94 Total: 23.91 kcal Atomic # 6 Polarization: -69.39 SS G_CDS: 3.12 Total: -66.27 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.30 Total: -49.56 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.73 Total: -15.37 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.70 Total: 46.88 kcal Total: -65.73 5.33 -60.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.095 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds