Wall clock time and date at job start Mon Mar 30 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46841 * 2 1 4 4 C 1.53006 * 109.47312 * 240.00198 * 2 1 3 5 5 C 1.52999 * 109.47320 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46817 * 59.99783 * 5 4 2 7 7 H 1.09002 * 109.47085 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46889 * 60.00415 * 6 5 4 9 9 C 1.35644 * 117.00209 * 83.32212 * 8 6 5 10 10 C 1.38440 * 120.26461 * 354.78789 * 9 8 6 11 11 C 1.38308 * 120.05158 * 180.02562 * 10 9 8 12 12 C 1.38819 * 120.59007 * 0.02562 * 11 10 9 13 13 C 1.36490 * 120.53728 * 359.97438 * 12 11 10 14 14 C 1.40726 * 119.92917 * 359.76762 * 13 12 11 15 15 C 1.41159 * 120.28828 * 180.27986 * 14 13 12 16 16 H 1.08000 * 119.99681 * 208.66986 * 15 14 13 17 17 C 1.39931 * 120.00286 * 28.66344 * 15 14 13 18 18 N 1.30869 * 119.99873 * 10.96405 * 17 15 14 19 19 Si 1.86803 * 120.00121 * 190.96736 * 17 15 14 20 20 H 1.48501 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47184 * 120.00094 * 19 17 15 22 22 H 1.48500 * 109.47090 * 240.00042 * 19 17 15 23 23 C 1.52996 * 109.47373 * 300.00140 * 6 5 4 24 24 C 1.52997 * 109.47368 * 120.00084 * 2 1 3 25 25 H 1.09001 * 109.47208 * 60.00141 * 24 2 1 26 26 C 1.52998 * 109.47173 * 299.99894 * 24 2 1 27 27 H 1.09003 * 109.46534 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46925 * 299.99866 * 1 2 3 29 29 H 1.08995 * 109.47036 * 59.99889 * 1 2 3 30 30 H 1.08993 * 109.47143 * 300.00023 * 4 2 1 31 31 H 1.09008 * 109.46978 * 59.99711 * 4 2 1 32 32 H 1.08995 * 109.47450 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47160 * 300.00002 * 5 4 2 34 34 H 1.08001 * 119.98026 * 0.02852 * 10 9 8 35 35 H 1.07997 * 119.70491 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.73250 * 179.97438 * 12 11 10 37 37 H 1.08007 * 120.03563 * 180.02562 * 13 12 11 38 38 H 0.97003 * 119.99740 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.47155 * 299.99276 * 23 6 5 40 40 H 1.09008 * 109.46998 * 180.02562 * 23 6 5 41 41 H 1.09001 * 109.47122 * 60.00301 * 26 24 2 42 42 H 1.08995 * 109.47316 * 179.97438 * 26 24 2 43 43 H 1.09001 * 109.47255 * 300.00218 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4416 -0.0008 8 8 3.6047 -2.7890 -0.0002 9 6 4.3135 -3.6925 -0.7221 10 6 5.3790 -3.2797 -1.5036 11 6 6.0984 -4.2047 -2.2383 12 6 5.7625 -5.5511 -2.2019 13 6 4.7166 -5.9846 -1.4396 14 6 3.9729 -5.0633 -0.6790 15 6 2.8935 -5.5042 0.1167 16 1 2.0654 -4.8409 0.3186 17 6 2.8962 -6.8005 0.6436 18 7 3.9820 -7.5286 0.5843 19 14 1.3500 -7.4917 1.4317 20 1 0.2679 -6.4764 1.3722 21 1 0.9244 -8.7116 0.6999 22 1 1.6286 -7.8365 2.8490 23 6 3.5705 -0.7204 1.2489 24 6 2.0401 -0.7212 1.2492 25 1 1.6768 -1.7489 1.2492 26 6 1.5301 0.0000 2.4984 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6768 -1.7488 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.9334 -1.2348 -2.1393 33 1 3.9330 0.3071 -1.2498 34 1 5.6488 -2.2346 -1.5397 35 1 6.9283 -3.8764 -2.8465 36 1 6.3335 -6.2614 -2.7815 37 1 4.4627 -7.0342 -1.4169 38 1 3.9840 -8.4271 0.9499 39 1 3.9336 0.3074 1.2488 40 1 3.9346 -1.2338 2.1389 41 1 0.4401 -0.0001 2.4985 42 1 1.8931 -0.5141 3.3884 43 1 1.8934 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:58 Heat of formation + Delta-G solvation = -49.823630 kcal Electronic energy + Delta-G solvation = -22022.528549 eV Core-core repulsion = 19031.320177 eV Total energy + Delta-G solvation = -2991.208372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.67069 -37.76641 -35.73786 -33.50714 -32.09961 -31.60777 -29.53192 -28.51793 -26.96998 -25.29891 -25.04610 -21.90349 -21.39289 -20.65676 -20.10758 -18.94079 -17.39161 -16.29602 -15.41374 -15.11800 -14.69854 -14.30105 -14.13709 -14.02961 -13.66813 -13.40061 -12.92226 -12.58928 -12.50969 -12.12790 -12.01195 -11.73622 -11.58063 -11.46264 -11.31138 -11.21782 -11.13486 -10.96021 -10.76187 -10.56770 -10.45448 -10.23121 -10.01880 -9.68761 -9.62584 -9.43778 -9.25663 -9.14722 -7.37742 -6.90108 -6.58241 -4.18537 2.80368 3.05770 3.13858 3.20178 3.24053 4.03147 4.34938 4.74352 4.90513 4.94264 5.00923 5.27774 5.39381 5.55196 5.59790 5.65787 5.71330 5.73850 5.82050 5.88720 5.97590 5.98491 6.06969 6.09075 6.14117 6.21485 6.26278 6.26803 6.36514 6.47716 6.56470 6.59025 6.60306 6.66894 6.85749 7.02164 7.19781 7.37968 7.45613 7.80828 7.87050 8.12915 8.29319 8.50754 8.80604 8.95047 9.17280 10.33792 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.007024 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.384240 B = 3985.444470 C = 5297.028095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.142 4.142 6 C 0.088 3.912 7 H 0.060 0.940 8 O -0.294 6.294 9 C 0.022 3.978 10 C -0.184 4.184 11 C -0.210 4.210 12 C -0.132 4.132 13 C -0.140 4.140 14 C 0.094 3.906 15 C -0.444 4.444 16 H 0.080 0.920 17 C 0.070 3.930 18 N -0.808 5.808 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.104 4.104 24 C -0.085 4.085 25 H 0.085 0.915 26 C -0.147 4.147 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.277 0.723 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 11.585 0.570 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.180 4.180 6 C 0.030 3.970 7 H 0.077 0.923 8 O -0.209 6.209 9 C -0.023 4.023 10 C -0.203 4.203 11 C -0.229 4.229 12 C -0.151 4.151 13 C -0.160 4.160 14 C 0.092 3.908 15 C -0.474 4.474 16 H 0.098 0.902 17 C -0.145 4.145 18 N -0.436 5.436 19 Si 0.733 3.267 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.103 0.897 26 C -0.205 4.205 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.666 11.322 0.769 11.926 hybrid contribution -0.207 -0.265 0.231 0.409 sum -3.874 11.057 1.000 11.758 Atomic orbital electron populations 1.21881 0.95727 1.01980 1.00942 1.21123 0.95123 0.98730 0.95120 0.92054 1.21464 0.95003 1.01638 0.96477 1.22073 0.96865 0.99918 0.99160 1.22075 0.97586 0.82738 0.94583 0.92257 1.86011 1.51299 1.15754 1.67834 1.19241 0.94790 0.89944 0.98294 1.20662 0.99280 0.97877 1.02486 1.20159 1.03017 0.93460 1.06300 1.20388 0.98996 0.94598 1.01072 1.20930 0.97563 1.00087 0.97379 1.17082 0.93990 0.87115 0.92654 1.19401 1.04609 0.97082 1.26308 0.90211 1.25856 0.96842 0.96709 0.95081 1.69822 1.26933 1.09855 1.36950 0.86261 0.82263 0.79293 0.78891 1.18474 1.19973 1.20160 1.21619 0.96045 0.99186 0.97326 1.21101 0.94811 1.00772 0.93703 0.89701 1.21892 1.00890 0.99862 0.97811 0.92466 0.92764 0.93260 0.90725 0.92836 0.91243 0.92026 0.88600 0.89553 0.89494 0.85777 0.91247 0.91360 0.91349 0.92646 0.92880 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.84 37.16 0.33 -1.42 16 2 C -0.08 -1.07 2.25 -90.62 -0.20 -1.28 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.61 5.06 -26.73 -0.14 -1.74 16 5 C -0.14 -2.19 5.24 -26.73 -0.14 -2.33 16 6 C 0.09 1.52 2.43 -26.73 -0.06 1.46 16 7 H 0.06 1.05 6.41 -51.93 -0.33 0.71 16 8 O -0.29 -6.55 7.80 -18.63 -0.15 -6.69 16 9 C 0.02 0.54 6.62 -38.34 -0.25 0.28 16 10 C -0.18 -4.18 8.17 -39.48 -0.32 -4.50 16 11 C -0.21 -4.78 10.04 -39.34 -0.39 -5.18 16 12 C -0.13 -3.17 9.97 -40.00 -0.40 -3.57 16 13 C -0.14 -3.70 8.61 -39.27 -0.34 -4.04 16 14 C 0.09 2.56 5.56 -106.68 -0.59 1.96 16 15 C -0.44 -12.06 8.70 -37.84 -0.33 -12.39 16 16 H 0.08 2.16 7.69 -52.49 -0.40 1.75 16 17 C 0.07 1.81 5.25 -17.33 -0.09 1.72 16 18 N -0.81 -21.42 10.85 55.55 0.60 -20.81 16 19 Si 0.91 19.39 29.57 -169.99 -5.03 14.37 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.10 -1.54 4.95 -26.71 -0.13 -1.67 16 24 C -0.09 -1.21 2.10 -90.60 -0.19 -1.40 16 25 H 0.08 1.46 7.68 -51.93 -0.40 1.06 16 26 C -0.15 -1.74 8.84 37.16 0.33 -1.41 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 31 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.92 5.38 -52.49 -0.28 1.63 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.12 3.38 6.22 -52.48 -0.33 3.05 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 41 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -27.76 330.50 -9.47 -37.22 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.95 Total: 6.43 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: -2.93 Total: -35.50 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.60 Total: -20.81 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.15 Total: -6.69 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.76 -9.47 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.599 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds