Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46841 * 2 1 4 4 C 1.53006 * 109.47312 * 240.00198 * 2 1 3 5 5 C 1.52999 * 109.47320 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46817 * 59.99783 * 5 4 2 7 7 H 1.09002 * 109.47085 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46889 * 60.00415 * 6 5 4 9 9 C 1.35644 * 117.00209 * 83.32212 * 8 6 5 10 10 C 1.38440 * 120.26461 * 354.78789 * 9 8 6 11 11 C 1.38308 * 120.05158 * 180.02562 * 10 9 8 12 12 C 1.38819 * 120.59007 * 0.02562 * 11 10 9 13 13 C 1.36490 * 120.53728 * 359.97438 * 12 11 10 14 14 C 1.40726 * 119.92917 * 359.76762 * 13 12 11 15 15 C 1.41159 * 120.28828 * 180.27986 * 14 13 12 16 16 H 1.08000 * 119.99681 * 208.66986 * 15 14 13 17 17 C 1.39931 * 120.00286 * 28.66344 * 15 14 13 18 18 N 1.30869 * 119.99873 * 10.96405 * 17 15 14 19 19 Si 1.86803 * 120.00121 * 190.96736 * 17 15 14 20 20 H 1.48501 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47184 * 120.00094 * 19 17 15 22 22 H 1.48500 * 109.47090 * 240.00042 * 19 17 15 23 23 C 1.52996 * 109.47373 * 300.00140 * 6 5 4 24 24 C 1.52997 * 109.47368 * 120.00084 * 2 1 3 25 25 H 1.09001 * 109.47208 * 60.00141 * 24 2 1 26 26 C 1.52998 * 109.47173 * 299.99894 * 24 2 1 27 27 H 1.09003 * 109.46534 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46925 * 299.99866 * 1 2 3 29 29 H 1.08995 * 109.47036 * 59.99889 * 1 2 3 30 30 H 1.08993 * 109.47143 * 300.00023 * 4 2 1 31 31 H 1.09008 * 109.46978 * 59.99711 * 4 2 1 32 32 H 1.08995 * 109.47450 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47160 * 300.00002 * 5 4 2 34 34 H 1.08001 * 119.98026 * 0.02852 * 10 9 8 35 35 H 1.07997 * 119.70491 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.73250 * 179.97438 * 12 11 10 37 37 H 1.08007 * 120.03563 * 180.02562 * 13 12 11 38 38 H 0.97003 * 119.99740 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.47155 * 299.99276 * 23 6 5 40 40 H 1.09008 * 109.46998 * 180.02562 * 23 6 5 41 41 H 1.09001 * 109.47122 * 60.00301 * 26 24 2 42 42 H 1.08995 * 109.47316 * 179.97438 * 26 24 2 43 43 H 1.09001 * 109.47255 * 300.00218 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4416 -0.0008 8 8 3.6047 -2.7890 -0.0002 9 6 4.3135 -3.6925 -0.7221 10 6 5.3790 -3.2797 -1.5036 11 6 6.0984 -4.2047 -2.2383 12 6 5.7625 -5.5511 -2.2019 13 6 4.7166 -5.9846 -1.4396 14 6 3.9729 -5.0633 -0.6790 15 6 2.8935 -5.5042 0.1167 16 1 2.0654 -4.8409 0.3186 17 6 2.8962 -6.8005 0.6436 18 7 3.9820 -7.5286 0.5843 19 14 1.3500 -7.4917 1.4317 20 1 0.2679 -6.4764 1.3722 21 1 0.9244 -8.7116 0.6999 22 1 1.6286 -7.8365 2.8490 23 6 3.5705 -0.7204 1.2489 24 6 2.0401 -0.7212 1.2492 25 1 1.6768 -1.7489 1.2492 26 6 1.5301 0.0000 2.4984 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6768 -1.7488 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.9334 -1.2348 -2.1393 33 1 3.9330 0.3071 -1.2498 34 1 5.6488 -2.2346 -1.5397 35 1 6.9283 -3.8764 -2.8465 36 1 6.3335 -6.2614 -2.7815 37 1 4.4627 -7.0342 -1.4169 38 1 3.9840 -8.4271 0.9499 39 1 3.9336 0.3074 1.2488 40 1 3.9346 -1.2338 2.1389 41 1 0.4401 -0.0001 2.4985 42 1 1.8931 -0.5141 3.3884 43 1 1.8934 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -62.142507 kcal Electronic energy + Delta-G solvation = -22023.062736 eV Core-core repulsion = 19031.320177 eV Total energy + Delta-G solvation = -2991.742559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14075 -39.34021 -37.38268 -35.44487 -33.33427 -32.80314 -31.42898 -30.34787 -28.10240 -27.00448 -26.43787 -23.41032 -22.73731 -22.48120 -21.41604 -20.32266 -19.29728 -18.03037 -17.09223 -16.56797 -16.28377 -15.94398 -15.42700 -15.32134 -15.06060 -14.81559 -14.45109 -14.30693 -13.97560 -13.62774 -13.30337 -13.16694 -12.86414 -12.81608 -12.73493 -12.66644 -12.55872 -12.39132 -12.28929 -12.14247 -11.84413 -11.64396 -11.55897 -11.30462 -11.10978 -11.07219 -10.74293 -10.72589 -9.32595 -8.79531 -8.49999 -6.21347 0.94287 1.13748 1.35507 1.47580 1.50413 2.23052 2.76214 2.83817 3.69645 3.78862 3.80335 3.85176 4.13357 4.19612 4.33371 4.39448 4.48150 4.55104 4.58409 4.67004 4.67795 4.73842 4.80398 4.87164 4.96551 4.99998 5.02457 5.10851 5.12437 5.19808 5.21070 5.23763 5.36513 5.37180 5.47450 5.48619 5.54421 5.57387 5.72879 5.91321 5.95013 6.17960 6.34391 6.57177 6.86175 6.96496 7.31938 8.42771 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.007024 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.384240 B = 3985.444470 C = 5297.028095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.089 0.911 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.075 3.925 7 H 0.058 0.942 8 O -0.314 6.314 9 C 0.019 3.981 10 C -0.187 4.187 11 C -0.201 4.201 12 C -0.143 4.143 13 C -0.160 4.160 14 C 0.052 3.948 15 C -0.477 4.477 16 H 0.064 0.936 17 C 0.029 3.971 18 N -0.840 5.840 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.262 1.262 22 H -0.266 1.266 23 C -0.101 4.101 24 C -0.086 4.086 25 H 0.040 0.960 26 C -0.142 4.142 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.284 0.716 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 14.256 0.566 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 H 0.107 0.893 4 C -0.145 4.145 5 C -0.174 4.174 6 C 0.018 3.982 7 H 0.076 0.924 8 O -0.229 6.229 9 C -0.026 4.026 10 C -0.206 4.206 11 C -0.220 4.220 12 C -0.161 4.161 13 C -0.180 4.180 14 C 0.050 3.950 15 C -0.508 4.508 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.468 5.468 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.187 1.187 22 H -0.191 1.191 23 C -0.138 4.138 24 C -0.104 4.104 25 H 0.058 0.942 26 C -0.199 4.199 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.544 14.005 0.758 14.466 hybrid contribution -0.146 -0.974 0.169 0.999 sum -3.690 13.031 0.927 13.575 Atomic orbital electron populations 1.21868 0.94920 1.01059 1.02491 1.21110 0.95834 0.99400 0.93162 0.89300 1.21449 0.94829 0.99712 0.98523 1.22042 0.97047 1.01274 0.97048 1.22507 0.97720 0.80778 0.97164 0.92382 1.86005 1.51678 1.17787 1.67449 1.19403 0.95066 0.89828 0.98314 1.21003 0.98383 0.99566 1.01642 1.20623 1.03175 0.92804 1.05379 1.20669 0.98538 0.96003 1.00925 1.20895 0.99033 0.99346 0.98737 1.17472 0.94953 0.88901 0.93697 1.19456 1.04913 0.98213 1.28207 0.91808 1.26635 0.99899 0.96440 0.95256 1.69875 1.28613 1.10409 1.37941 0.85228 0.78041 0.78558 0.78294 1.18744 1.18684 1.19133 1.21673 0.96391 1.00480 0.95301 1.21056 0.94519 0.98944 0.95907 0.94155 1.21841 1.01353 1.00638 0.96039 0.94668 0.91062 0.91852 0.94950 0.90997 0.92980 0.88405 0.85585 0.85954 0.87128 0.87589 0.90556 0.87696 0.92719 0.91934 0.93449 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.84 71.98 0.64 -2.56 16 2 C -0.08 -1.83 2.25 -10.79 -0.02 -1.85 16 3 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.11 -3.09 5.06 30.60 0.15 -2.93 16 5 C -0.14 -3.95 5.24 30.59 0.16 -3.79 16 6 C 0.07 2.55 2.43 30.59 0.07 2.62 16 7 H 0.06 1.97 6.41 -2.39 -0.02 1.95 16 8 O -0.31 -14.52 7.80 -89.58 -0.70 -15.22 16 9 C 0.02 0.96 6.62 23.07 0.15 1.11 16 10 C -0.19 -8.37 8.17 22.33 0.18 -8.18 16 11 C -0.20 -8.83 10.04 22.43 0.23 -8.61 16 12 C -0.14 -6.86 9.97 22.00 0.22 -6.64 16 13 C -0.16 -8.82 8.61 22.47 0.19 -8.63 16 14 C 0.05 2.97 5.56 -21.20 -0.12 2.85 16 15 C -0.48 -27.61 8.70 23.40 0.20 -27.41 16 16 H 0.06 3.73 7.69 -2.91 -0.02 3.71 16 17 C 0.03 1.58 5.25 85.25 0.45 2.03 16 18 N -0.84 -46.39 10.85 21.83 0.24 -46.15 16 19 Si 0.98 41.29 29.57 68.60 2.03 43.32 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 C -0.10 -2.83 4.95 30.61 0.15 -2.68 16 24 C -0.09 -2.36 2.10 -10.78 -0.02 -2.38 16 25 H 0.04 1.46 7.68 -2.39 -0.02 1.44 16 26 C -0.14 -3.03 8.84 71.98 0.64 -2.40 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.31 6.43 -2.39 -0.02 1.30 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.03 1.19 7.68 -2.39 -0.02 1.17 16 31 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.05 1.68 6.74 -2.39 -0.02 1.66 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.13 4.78 5.38 -2.91 -0.02 4.76 16 35 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.11 6.10 6.22 -2.91 -0.02 6.08 16 38 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.06 1.25 6.43 -2.39 -0.02 1.23 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -63.99 330.50 5.81 -58.17 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.97 Total: 29.32 kcal Atomic # 6 Polarization: -72.71 SS G_CDS: 3.27 Total: -69.44 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.24 Total: -46.15 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.70 Total: -15.22 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -63.99 5.81 -58.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.971 kcal (2) G-P(sol) polarization free energy of solvation -63.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds