Wall clock time and date at job start Mon Mar 30 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47490 * 2 1 4 4 C 1.53004 * 109.47242 * 239.99931 * 2 1 3 5 5 C 1.53001 * 109.47242 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47144 * 59.99962 * 5 4 2 7 7 H 1.09007 * 109.46839 * 59.99708 * 6 5 4 8 8 O 1.42893 * 109.47145 * 179.97438 * 6 5 4 9 9 C 1.35639 * 117.00363 * 278.52370 * 8 6 5 10 10 C 1.38447 * 120.26389 * 5.50478 * 9 8 6 11 11 C 1.38304 * 120.05135 * 180.02562 * 10 9 8 12 12 C 1.38819 * 120.59386 * 0.02562 * 11 10 9 13 13 C 1.36490 * 120.53689 * 359.97010 * 12 11 10 14 14 C 1.40722 * 119.92878 * 0.02562 * 13 12 11 15 15 C 1.41155 * 120.28853 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99724 * 159.59772 * 15 14 13 17 17 C 1.39926 * 120.00409 * 339.60368 * 15 14 13 18 18 N 1.30869 * 119.99887 * 327.93133 * 17 15 14 19 19 Si 1.86799 * 120.00410 * 147.92625 * 17 15 14 20 20 H 1.48502 * 109.47007 * 94.99123 * 19 17 15 21 21 H 1.48493 * 109.47403 * 214.99103 * 19 17 15 22 22 H 1.48502 * 109.47060 * 334.99180 * 19 17 15 23 23 C 1.52997 * 109.47197 * 300.00410 * 6 5 4 24 24 C 1.52997 * 109.47144 * 119.99893 * 2 1 3 25 25 H 1.09006 * 109.47176 * 60.00135 * 24 2 1 26 26 C 1.52994 * 109.47470 * 300.00166 * 24 2 1 27 27 H 1.08993 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47153 * 300.00429 * 1 2 3 29 29 H 1.09008 * 109.46839 * 59.99960 * 1 2 3 30 30 H 1.09000 * 109.46880 * 60.00064 * 4 2 1 31 31 H 1.08994 * 109.47196 * 300.00554 * 4 2 1 32 32 H 1.08997 * 109.47034 * 299.99773 * 5 4 2 33 33 H 1.08999 * 109.46696 * 180.02562 * 5 4 2 34 34 H 1.07998 * 119.97660 * 0.03925 * 10 9 8 35 35 H 1.07998 * 119.70663 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.73105 * 179.70148 * 12 11 10 37 37 H 1.08004 * 120.03811 * 179.97438 * 13 12 11 38 38 H 0.97002 * 120.00228 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.47373 * 180.02562 * 23 6 5 40 40 H 1.09007 * 109.46653 * 299.99413 * 23 6 5 41 41 H 1.08997 * 109.47274 * 59.99353 * 26 24 2 42 42 H 1.08999 * 109.47646 * 180.02562 * 26 24 2 43 43 H 1.09006 * 109.46895 * 300.00141 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5701 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7157 -2.4710 0.0001 8 8 5.5084 -1.4445 0.0003 9 6 6.1236 -2.3904 -0.7524 10 6 5.3793 -3.2276 -1.5659 11 6 6.0111 -4.1910 -2.3312 12 6 7.3917 -4.3302 -2.2930 13 6 8.1490 -3.5178 -1.4996 14 6 7.5293 -2.5300 -0.7118 15 6 8.3051 -1.6860 0.1118 16 1 7.9016 -0.7435 0.4513 17 6 9.5967 -2.0704 0.4883 18 7 9.8800 -3.3371 0.6549 19 14 10.9168 -0.7755 0.7531 20 1 10.9836 -0.4243 2.1944 21 1 12.2302 -1.3102 0.3125 22 1 10.5860 0.4375 -0.0372 23 6 3.5695 -0.7222 1.2495 24 6 2.0400 -0.7212 1.2492 25 1 1.6767 -1.7489 1.2492 26 6 1.5300 -0.0001 2.4985 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3057 -1.2488 33 1 3.9333 -1.2353 -2.1392 34 1 4.3046 -3.1282 -1.6032 35 1 5.4250 -4.8414 -2.9635 36 1 7.8702 -5.0904 -2.8927 37 1 9.2225 -3.6334 -1.4758 38 1 10.7756 -3.6037 0.9155 39 1 3.9328 -1.2360 2.1395 40 1 3.9333 0.3053 1.2497 41 1 0.4401 0.0000 2.4985 42 1 1.8937 -0.5136 3.3885 43 1 1.8934 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:01 Heat of formation + Delta-G solvation = -52.344346 kcal Electronic energy + Delta-G solvation = -21536.768261 eV Core-core repulsion = 18545.450582 eV Total energy + Delta-G solvation = -2991.317679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.62681 -37.95056 -35.90008 -33.61351 -32.27833 -31.66801 -29.65039 -28.57764 -26.97734 -25.33573 -24.97822 -21.97684 -21.49087 -20.71735 -19.81088 -19.58453 -17.39159 -16.50770 -15.45242 -14.97510 -14.63668 -14.57390 -14.36997 -14.01991 -13.83250 -13.42919 -13.03571 -12.66811 -12.46098 -12.28535 -12.17285 -11.91264 -11.78819 -11.61635 -11.57385 -11.19885 -11.00998 -10.83254 -10.78725 -10.68463 -10.49491 -10.35475 -10.22642 -10.01506 -9.68420 -9.49249 -9.30922 -8.94375 -7.50212 -7.00715 -6.74896 -4.13892 2.79623 3.06369 3.10645 3.14015 3.28691 3.97321 4.22613 4.58824 4.68380 4.78102 4.96869 5.16338 5.28450 5.44277 5.47978 5.52179 5.60726 5.63972 5.69744 5.71228 5.82325 5.90630 5.91963 5.94367 6.07342 6.09819 6.16334 6.26836 6.28637 6.36774 6.40364 6.45699 6.52242 6.60670 6.68521 7.03861 7.12841 7.35359 7.39371 7.79860 7.84653 8.13807 8.28075 8.49275 8.74366 8.88585 9.18339 10.13079 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.005015 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.511869 B = 5581.413137 C = 6523.930347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.110 4.110 5 C -0.146 4.146 6 C 0.092 3.908 7 H 0.059 0.941 8 O -0.303 6.303 9 C 0.008 3.992 10 C -0.172 4.172 11 C -0.228 4.228 12 C -0.118 4.118 13 C -0.166 4.166 14 C 0.103 3.897 15 C -0.453 4.453 16 H 0.085 0.915 17 C 0.086 3.914 18 N -0.775 5.775 19 Si 0.895 3.105 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.107 4.107 24 C -0.082 4.082 25 H 0.069 0.931 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.281 0.719 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 5.140 0.549 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.184 4.184 6 C 0.035 3.965 7 H 0.077 0.923 8 O -0.218 6.218 9 C -0.036 4.036 10 C -0.191 4.191 11 C -0.248 4.248 12 C -0.137 4.137 13 C -0.186 4.186 14 C 0.100 3.900 15 C -0.481 4.481 16 H 0.103 0.897 17 C -0.135 4.135 18 N -0.398 5.398 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.145 4.145 24 C -0.101 4.101 25 H 0.088 0.912 26 C -0.204 4.204 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.335 5.113 0.756 13.374 hybrid contribution 0.522 0.211 -0.033 0.565 sum -11.812 5.324 0.723 12.977 Atomic orbital electron populations 1.21890 0.95560 1.01662 1.01412 1.21205 0.95081 0.99770 0.94657 0.91145 1.21541 0.95420 1.00503 0.97285 1.22142 0.94995 1.01886 0.99361 1.22032 0.81530 0.98573 0.94376 0.92318 1.85964 1.17615 1.52007 1.66242 1.19056 0.92014 0.94172 0.98379 1.20657 0.97351 0.99841 1.01222 1.20049 0.94291 1.03529 1.06903 1.20300 0.93796 0.99443 1.00148 1.20605 0.98845 0.99685 0.99462 1.16995 0.87499 0.92644 0.92830 1.19374 0.97380 1.04851 1.26489 0.89677 1.25913 0.99708 0.95511 0.92333 1.69959 1.21863 1.17651 1.30353 0.86517 0.79767 0.82459 0.79362 1.19554 1.20007 1.18175 1.21552 0.94028 1.01494 0.97405 1.21085 0.94758 0.99704 0.94551 0.91237 1.21866 1.00713 1.00540 0.97292 0.92828 0.92507 0.92981 0.92012 0.92118 0.91439 0.91011 0.88597 0.89625 0.89598 0.87134 0.90787 0.91218 0.91258 0.92505 0.92677 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 2 C -0.09 -0.98 2.25 -90.62 -0.20 -1.19 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.36 5.20 -26.73 -0.14 -1.49 16 5 C -0.15 -2.30 5.10 -26.73 -0.14 -2.44 16 6 C 0.09 1.66 2.13 -26.73 -0.06 1.60 16 7 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 8 O -0.30 -7.09 9.06 -18.62 -0.17 -7.26 16 9 C 0.01 0.20 6.60 -38.33 -0.25 -0.05 16 10 C -0.17 -3.99 8.10 -39.48 -0.32 -4.31 16 11 C -0.23 -5.30 10.04 -39.34 -0.39 -5.69 16 12 C -0.12 -2.87 9.97 -40.00 -0.40 -3.27 16 13 C -0.17 -4.43 8.74 -39.27 -0.34 -4.77 16 14 C 0.10 2.84 5.60 -106.68 -0.60 2.24 16 15 C -0.45 -12.44 8.67 -37.84 -0.33 -12.77 16 16 H 0.09 2.34 7.69 -52.49 -0.40 1.93 16 17 C 0.09 2.19 4.81 -17.33 -0.08 2.11 16 18 N -0.77 -20.25 11.65 55.55 0.65 -19.60 16 19 Si 0.90 18.89 29.66 -169.99 -5.04 13.85 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.11 -1.61 4.85 -26.76 -0.13 -1.74 16 24 C -0.08 -0.98 2.24 -90.65 -0.20 -1.18 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 C -0.15 -1.48 8.84 37.15 0.33 -1.15 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.24 6.51 -51.93 -0.34 0.90 16 34 H 0.10 1.97 5.29 -52.49 -0.28 1.69 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.11 2.98 6.40 -52.48 -0.34 2.64 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -28.23 332.96 -9.47 -37.70 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.99 Total: 5.42 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: -2.93 Total: -35.14 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.65 Total: -19.60 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.17 Total: -7.26 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.04 Total: 13.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.23 -9.47 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.641 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds