Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47490 * 2 1 4 4 C 1.53004 * 109.47242 * 239.99931 * 2 1 3 5 5 C 1.53001 * 109.47242 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47144 * 59.99962 * 5 4 2 7 7 H 1.09007 * 109.46839 * 59.99708 * 6 5 4 8 8 O 1.42893 * 109.47145 * 179.97438 * 6 5 4 9 9 C 1.35639 * 117.00363 * 278.52370 * 8 6 5 10 10 C 1.38447 * 120.26389 * 5.50478 * 9 8 6 11 11 C 1.38304 * 120.05135 * 180.02562 * 10 9 8 12 12 C 1.38819 * 120.59386 * 0.02562 * 11 10 9 13 13 C 1.36490 * 120.53689 * 359.97010 * 12 11 10 14 14 C 1.40722 * 119.92878 * 0.02562 * 13 12 11 15 15 C 1.41155 * 120.28853 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99724 * 159.59772 * 15 14 13 17 17 C 1.39926 * 120.00409 * 339.60368 * 15 14 13 18 18 N 1.30869 * 119.99887 * 327.93133 * 17 15 14 19 19 Si 1.86799 * 120.00410 * 147.92625 * 17 15 14 20 20 H 1.48502 * 109.47007 * 94.99123 * 19 17 15 21 21 H 1.48493 * 109.47403 * 214.99103 * 19 17 15 22 22 H 1.48502 * 109.47060 * 334.99180 * 19 17 15 23 23 C 1.52997 * 109.47197 * 300.00410 * 6 5 4 24 24 C 1.52997 * 109.47144 * 119.99893 * 2 1 3 25 25 H 1.09006 * 109.47176 * 60.00135 * 24 2 1 26 26 C 1.52994 * 109.47470 * 300.00166 * 24 2 1 27 27 H 1.08993 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47153 * 300.00429 * 1 2 3 29 29 H 1.09008 * 109.46839 * 59.99960 * 1 2 3 30 30 H 1.09000 * 109.46880 * 60.00064 * 4 2 1 31 31 H 1.08994 * 109.47196 * 300.00554 * 4 2 1 32 32 H 1.08997 * 109.47034 * 299.99773 * 5 4 2 33 33 H 1.08999 * 109.46696 * 180.02562 * 5 4 2 34 34 H 1.07998 * 119.97660 * 0.03925 * 10 9 8 35 35 H 1.07998 * 119.70663 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.73105 * 179.70148 * 12 11 10 37 37 H 1.08004 * 120.03811 * 179.97438 * 13 12 11 38 38 H 0.97002 * 120.00228 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.47373 * 180.02562 * 23 6 5 40 40 H 1.09007 * 109.46653 * 299.99413 * 23 6 5 41 41 H 1.08997 * 109.47274 * 59.99353 * 26 24 2 42 42 H 1.08999 * 109.47646 * 180.02562 * 26 24 2 43 43 H 1.09006 * 109.46895 * 300.00141 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5701 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7157 -2.4710 0.0001 8 8 5.5084 -1.4445 0.0003 9 6 6.1236 -2.3904 -0.7524 10 6 5.3793 -3.2276 -1.5659 11 6 6.0111 -4.1910 -2.3312 12 6 7.3917 -4.3302 -2.2930 13 6 8.1490 -3.5178 -1.4996 14 6 7.5293 -2.5300 -0.7118 15 6 8.3051 -1.6860 0.1118 16 1 7.9016 -0.7435 0.4513 17 6 9.5967 -2.0704 0.4883 18 7 9.8800 -3.3371 0.6549 19 14 10.9168 -0.7755 0.7531 20 1 10.9836 -0.4243 2.1944 21 1 12.2302 -1.3102 0.3125 22 1 10.5860 0.4375 -0.0372 23 6 3.5695 -0.7222 1.2495 24 6 2.0400 -0.7212 1.2492 25 1 1.6767 -1.7489 1.2492 26 6 1.5300 -0.0001 2.4985 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3057 -1.2488 33 1 3.9333 -1.2353 -2.1392 34 1 4.3046 -3.1282 -1.6032 35 1 5.4250 -4.8414 -2.9635 36 1 7.8702 -5.0904 -2.8927 37 1 9.2225 -3.6334 -1.4758 38 1 10.7756 -3.6037 0.9155 39 1 3.9328 -1.2360 2.1395 40 1 3.9333 0.3053 1.2497 41 1 0.4401 0.0000 2.4985 42 1 1.8937 -0.5136 3.3885 43 1 1.8934 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -65.041282 kcal Electronic energy + Delta-G solvation = -21537.318841 eV Core-core repulsion = 18545.450582 eV Total energy + Delta-G solvation = -2991.868259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08105 -39.45397 -37.60403 -35.55084 -33.42066 -32.80602 -31.54754 -30.39996 -28.06101 -27.02142 -26.29901 -23.39142 -22.81302 -22.46824 -21.35344 -20.67725 -19.30348 -18.28305 -17.16360 -16.49660 -16.13114 -15.99646 -15.61154 -15.33623 -15.20169 -14.80006 -14.44070 -14.42404 -13.94045 -13.57366 -13.47425 -13.40141 -12.98188 -12.86746 -12.75902 -12.67900 -12.56211 -12.41904 -12.21050 -11.94469 -11.84553 -11.70797 -11.53765 -11.42289 -11.19478 -11.03170 -10.88167 -10.77688 -9.47742 -8.92365 -8.65805 -6.16608 0.93646 1.11546 1.35726 1.45364 1.55772 2.20359 2.62849 2.72469 3.64194 3.71714 3.74144 3.95162 4.10221 4.11950 4.20131 4.35637 4.45744 4.48680 4.52232 4.57368 4.66806 4.71254 4.75277 4.89912 4.91285 4.99235 5.04469 5.09204 5.12004 5.15556 5.19321 5.20341 5.28551 5.30170 5.41733 5.43008 5.48673 5.55938 5.61896 5.84313 5.92810 6.17217 6.31655 6.54774 6.78561 6.89390 7.29760 8.24705 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.005015 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.511869 B = 5581.413137 C = 6523.930347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.083 3.917 7 H 0.054 0.946 8 O -0.329 6.329 9 C -0.003 4.003 10 C -0.173 4.173 11 C -0.222 4.222 12 C -0.127 4.127 13 C -0.188 4.188 14 C 0.065 3.935 15 C -0.492 4.492 16 H 0.069 0.931 17 C 0.049 3.951 18 N -0.806 5.806 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.260 1.260 22 H -0.262 1.262 23 C -0.103 4.103 24 C -0.077 4.077 25 H 0.071 0.929 26 C -0.144 4.144 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.292 0.708 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.444 5.554 0.254 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.141 4.141 5 C -0.177 4.177 6 C 0.027 3.973 7 H 0.072 0.928 8 O -0.245 6.245 9 C -0.047 4.047 10 C -0.192 4.192 11 C -0.242 4.242 12 C -0.145 4.145 13 C -0.208 4.208 14 C 0.063 3.937 15 C -0.520 4.520 16 H 0.087 0.913 17 C -0.169 4.169 18 N -0.431 5.431 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.141 4.141 24 C -0.095 4.095 25 H 0.090 0.910 26 C -0.201 4.201 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.193 5.517 0.461 15.235 hybrid contribution 0.983 0.025 0.033 0.984 sum -13.211 5.542 0.494 14.334 Atomic orbital electron populations 1.21846 0.93403 1.02271 1.02496 1.21189 0.96762 0.99218 0.93286 0.91295 1.21534 0.92350 1.01373 0.98851 1.22062 0.97718 1.00696 0.97236 1.22419 0.78854 0.99094 0.96930 0.92761 1.85927 1.20754 1.51647 1.66124 1.19256 0.91907 0.94749 0.98825 1.20971 0.98706 0.99128 1.00371 1.20506 0.94196 1.03202 1.06267 1.20607 0.94485 0.99513 0.99883 1.20614 0.98529 1.00843 1.00771 1.17408 0.89014 0.93585 0.93718 1.19455 0.99330 1.04774 1.28477 0.91299 1.26699 1.01106 0.97657 0.91456 1.69960 1.22944 1.19352 1.30808 0.85403 0.76956 0.79106 0.79546 1.18495 1.18385 1.18640 1.21586 0.96677 1.00434 0.95398 1.21075 0.91839 1.00405 0.96185 0.91028 1.21848 1.01949 1.00235 0.96061 0.92440 0.91362 0.92061 0.90331 0.91595 0.92185 0.92697 0.85937 0.86149 0.87012 0.88524 0.89748 0.92552 0.91792 0.90439 0.92903 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.84 71.98 0.64 -1.47 16 2 C -0.09 -1.70 2.25 -10.79 -0.02 -1.72 16 3 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 4 C -0.10 -2.33 5.20 30.60 0.16 -2.17 16 5 C -0.14 -4.35 5.10 30.59 0.16 -4.19 16 6 C 0.08 3.03 2.13 30.59 0.07 3.10 16 7 H 0.05 1.99 6.55 -2.38 -0.02 1.98 16 8 O -0.33 -16.02 9.06 -89.53 -0.81 -16.83 16 9 C 0.00 -0.16 6.60 23.08 0.15 -0.01 16 10 C -0.17 -7.98 8.10 22.34 0.18 -7.80 16 11 C -0.22 -10.01 10.04 22.42 0.23 -9.79 16 12 C -0.13 -6.10 9.97 22.00 0.22 -5.88 16 13 C -0.19 -10.32 8.74 22.47 0.20 -10.12 16 14 C 0.07 3.76 5.60 -21.20 -0.12 3.64 16 15 C -0.49 -28.45 8.67 23.40 0.20 -28.25 16 16 H 0.07 4.04 7.69 -2.91 -0.02 4.02 16 17 C 0.05 2.57 4.81 85.25 0.41 2.98 16 18 N -0.81 -43.38 11.65 21.83 0.25 -43.13 16 19 Si 0.97 39.71 29.66 68.60 2.03 41.74 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 C -0.10 -3.13 4.85 30.58 0.15 -2.98 16 24 C -0.08 -1.69 2.24 -10.81 -0.02 -1.71 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 C -0.14 -2.58 8.84 71.98 0.64 -1.95 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.87 6.43 -2.39 -0.02 0.85 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.88 6.51 -2.39 -0.02 1.86 16 34 H 0.12 4.88 5.29 -2.91 -0.02 4.86 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.10 5.44 6.40 -2.91 -0.02 5.42 16 38 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.08 1.09 6.43 -2.39 -0.02 1.08 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -63.43 332.96 5.67 -57.76 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.97 Total: 28.79 kcal Atomic # 6 Polarization: -71.55 SS G_CDS: 3.22 Total: -68.33 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.25 Total: -43.13 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.81 Total: -16.83 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -63.43 5.67 -57.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.285 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds