Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46883 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99552 * 2 1 3 5 5 C 1.52998 * 109.46962 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46802 * 180.02562 * 5 4 2 7 7 O 1.42896 * 109.47369 * 60.00335 * 5 4 2 8 8 C 1.35637 * 117.00258 * 82.65201 * 7 5 4 9 9 C 1.38450 * 120.26737 * 2.47258 * 8 7 5 10 10 C 1.38303 * 120.05285 * 179.79133 * 9 8 7 11 11 C 1.38817 * 120.59219 * 0.46359 * 10 9 8 12 12 C 1.36497 * 120.53875 * 359.78837 * 11 10 9 13 13 C 1.40730 * 119.92706 * 359.97438 * 12 11 10 14 14 C 1.41146 * 120.28722 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99631 * 149.32068 * 14 13 12 16 16 C 1.39933 * 120.00191 * 329.31604 * 14 13 12 17 17 N 1.30865 * 120.00296 * 166.51602 * 16 14 13 18 18 Si 1.86797 * 119.99946 * 346.51620 * 16 14 13 19 19 H 1.48502 * 109.47172 * 92.78866 * 18 16 14 20 20 H 1.48502 * 109.47155 * 212.78697 * 18 16 14 21 21 H 1.48498 * 109.47222 * 332.78829 * 18 16 14 22 22 C 1.53004 * 109.47054 * 299.99700 * 5 4 2 23 23 C 1.52999 * 109.46936 * 60.00705 * 22 5 4 24 24 H 1.08994 * 109.47530 * 59.99434 * 23 22 5 25 25 C 1.52995 * 109.47121 * 180.02562 * 23 22 5 26 26 C 1.52993 * 109.47701 * 239.99842 * 2 1 3 27 27 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47851 * 300.00113 * 1 2 3 29 29 H 1.09003 * 109.47234 * 60.00499 * 1 2 3 30 30 H 1.08997 * 109.47154 * 300.00252 * 4 2 1 31 31 H 1.09002 * 109.46943 * 60.00484 * 4 2 1 32 32 H 1.08003 * 119.97280 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.70348 * 180.23056 * 10 9 8 34 34 H 1.07996 * 119.73469 * 179.77039 * 11 10 9 35 35 H 1.07995 * 120.03856 * 179.97438 * 12 11 10 36 36 H 0.96996 * 119.99991 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.47473 * 300.00105 * 22 5 4 38 38 H 1.09003 * 109.46694 * 180.02562 * 22 5 4 39 39 H 1.09002 * 109.47377 * 59.99643 * 25 23 22 40 40 H 1.09001 * 109.47017 * 179.97438 * 25 23 22 41 41 H 1.08994 * 109.47097 * 299.99400 * 25 23 22 42 42 H 1.09003 * 109.47055 * 59.99550 * 26 2 1 43 43 H 1.09002 * 109.47081 * 300.00037 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7206 1.2496 6 1 3.9332 -1.2348 2.1394 7 8 4.0458 0.6268 1.2499 8 6 4.1049 1.2588 2.4486 9 6 3.7635 0.5863 3.6096 10 6 3.8295 1.2337 4.8300 11 6 4.2275 2.5615 4.9046 12 6 4.5644 3.2492 3.7747 13 6 4.5100 2.6107 2.5218 14 6 4.8573 3.3144 1.3486 15 1 5.2923 2.7878 0.5119 16 6 4.6380 4.6941 1.2694 17 7 5.1898 5.3904 0.3085 18 14 3.5576 5.5423 2.5354 19 1 4.4022 6.0511 3.6458 20 1 2.8438 6.6770 1.8964 21 1 2.5678 4.5731 3.0704 22 6 4.0804 -1.4417 0.0004 23 6 3.5705 -0.7204 -1.2488 24 1 3.9335 0.3073 -1.2487 25 6 4.0805 -1.4418 -2.4980 26 6 2.0401 -0.7212 -1.2491 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6766 -0.2073 2.1392 31 1 1.6766 -1.7489 1.2493 32 1 3.4491 -0.4459 3.5627 33 1 3.5656 0.7026 5.7325 34 1 4.2705 3.0547 5.8645 35 1 4.8725 4.2821 3.8421 36 1 5.0375 6.3467 0.2534 37 1 3.7175 -2.4694 0.0003 38 1 5.1705 -1.4416 0.0010 39 1 3.7171 -2.4695 -2.4979 40 1 3.7168 -0.9282 -3.3880 41 1 5.1704 -1.4418 -2.4980 42 1 1.6767 -0.2075 -2.1392 43 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -62.702350 kcal Electronic energy + Delta-G solvation = -22147.289974 eV Core-core repulsion = 19155.523138 eV Total energy + Delta-G solvation = -2991.766836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.22965 -39.41396 -37.34049 -35.46433 -34.35156 -32.58672 -31.70871 -30.40453 -27.47193 -27.24618 -26.85850 -24.18692 -22.49074 -22.25481 -21.44123 -20.47473 -19.38112 -18.35691 -17.09510 -16.57339 -16.39890 -16.04084 -15.75992 -15.50252 -15.38089 -14.96539 -14.42093 -14.23984 -14.00398 -13.72718 -13.51064 -13.26638 -13.01935 -12.98387 -12.84174 -12.73704 -12.62213 -12.57243 -12.25306 -12.10448 -11.75432 -11.64622 -11.52878 -11.47913 -11.29375 -10.97779 -10.85646 -10.71076 -9.52961 -8.88012 -8.82237 -6.35298 0.75019 0.87969 1.23049 1.38536 1.46302 2.12116 2.64777 2.72569 3.48726 3.73675 3.78181 3.83872 4.11565 4.16909 4.23887 4.32004 4.38201 4.44687 4.56269 4.58554 4.64739 4.77842 4.79515 4.82721 4.85159 4.89974 4.91975 4.97444 5.00346 5.09894 5.11882 5.22824 5.28381 5.32009 5.34187 5.45060 5.50022 5.50984 5.67491 5.76821 5.78572 5.98939 6.21498 6.37963 6.52729 6.83297 7.18090 8.26923 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.006855 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.936869 B = 4083.864673 C = 4643.272981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.031 0.969 4 C -0.128 4.128 5 C 0.071 3.929 6 H 0.072 0.928 7 O -0.317 6.317 8 C 0.034 3.966 9 C -0.178 4.178 10 C -0.188 4.188 11 C -0.120 4.120 12 C -0.227 4.227 13 C 0.041 3.959 14 C -0.461 4.461 15 H 0.047 0.953 16 C 0.040 3.960 17 N -0.863 5.863 18 Si 0.967 3.033 19 H -0.256 1.256 20 H -0.282 1.282 21 H -0.255 1.255 22 C -0.100 4.100 23 C -0.095 4.095 24 H 0.033 0.967 25 C -0.139 4.139 26 C -0.095 4.095 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.290 0.710 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.919 -13.640 0.826 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.050 0.950 4 C -0.165 4.165 5 C 0.015 3.985 6 H 0.089 0.911 7 O -0.232 6.232 8 C -0.011 4.011 9 C -0.197 4.197 10 C -0.207 4.207 11 C -0.138 4.138 12 C -0.246 4.246 13 C 0.039 3.961 14 C -0.492 4.492 15 H 0.065 0.935 16 C -0.172 4.172 17 N -0.491 5.491 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.209 1.209 21 H -0.179 1.179 22 C -0.137 4.137 23 C -0.113 4.113 24 H 0.052 0.948 25 C -0.196 4.196 26 C -0.133 4.133 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.795 -13.357 0.441 15.472 hybrid contribution 0.131 1.049 0.211 1.078 sum -7.665 -12.308 0.652 14.514 Atomic orbital electron populations 1.21765 0.93917 1.02608 1.01302 1.21006 0.96205 0.98584 0.95405 0.95047 1.22055 0.94368 1.02145 0.97966 1.22617 0.94667 0.81584 0.99631 0.91059 1.86082 1.81382 1.27601 1.28090 1.19326 1.03585 0.93313 0.84903 1.21127 1.06339 1.00047 0.92167 1.20745 1.07913 0.94954 0.97056 1.20661 1.00434 0.95377 0.97365 1.20717 1.11399 0.99929 0.92568 1.17407 0.94349 0.90945 0.93448 1.19119 1.36961 0.92742 1.00329 0.93490 1.26786 0.95380 0.97477 0.97563 1.69723 1.37448 1.09383 1.32539 0.85490 0.79720 0.77511 0.78143 1.18147 1.20894 1.17873 1.21662 1.00435 0.99380 0.92189 1.21046 0.96273 0.98699 0.95302 0.94829 1.21767 1.00626 1.00930 0.96263 1.21567 0.93975 1.01180 0.96549 0.90567 0.93695 0.92685 0.92993 0.88050 0.84731 0.84686 0.85511 0.88258 0.90006 0.87234 0.92528 0.90541 0.92775 0.93304 0.92396 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 2 C -0.09 -2.79 2.57 -10.80 -0.03 -2.81 16 3 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 4 C -0.13 -3.61 4.61 30.59 0.14 -3.46 16 5 C 0.07 2.30 2.44 30.59 0.07 2.38 16 6 H 0.07 2.14 6.08 -2.39 -0.01 2.12 16 7 O -0.32 -14.37 7.83 -89.51 -0.70 -15.07 16 8 C 0.03 1.63 6.58 23.08 0.15 1.78 16 9 C -0.18 -7.12 8.29 22.34 0.19 -6.93 16 10 C -0.19 -7.13 10.04 22.42 0.23 -6.90 16 11 C -0.12 -4.98 9.97 22.00 0.22 -4.76 16 12 C -0.23 -11.13 6.98 22.47 0.16 -10.97 16 13 C 0.04 2.22 5.14 -21.20 -0.11 2.11 16 14 C -0.46 -27.76 9.21 23.40 0.22 -27.55 16 15 H 0.05 3.13 7.92 -2.91 -0.02 3.11 16 16 C 0.04 2.27 5.46 85.25 0.47 2.73 16 17 N -0.86 -50.51 13.93 21.83 0.30 -50.21 16 18 Si 0.97 45.62 24.41 68.60 1.67 47.30 16 19 H -0.26 -11.26 6.65 99.48 0.66 -10.60 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.25 -12.25 6.72 99.48 0.67 -11.58 16 22 C -0.10 -2.70 4.94 30.60 0.15 -2.55 16 23 C -0.09 -2.73 2.58 -10.78 -0.03 -2.76 16 24 H 0.03 1.31 7.68 -2.39 -0.02 1.29 16 25 C -0.14 -3.15 9.19 71.98 0.66 -2.49 16 26 C -0.10 -2.41 4.49 30.61 0.14 -2.28 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.63 7.21 -2.39 -0.02 1.61 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.14 4.44 5.65 -2.91 -0.02 4.42 16 33 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 34 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.10 4.88 4.43 -2.91 -0.01 4.86 16 36 H 0.29 15.29 8.30 -92.71 -0.77 14.52 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.71 328.95 5.45 -61.27 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.89 Total: 23.85 kcal Atomic # 6 Polarization: -70.42 SS G_CDS: 3.28 Total: -67.13 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.30 Total: -50.21 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.70 Total: -15.07 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.30 kcal Total: -66.71 5.45 -61.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.435 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds