Wall clock time and date at job start Mon Mar 30 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47336 * 2 1 4 4 C 1.52996 * 109.47320 * 239.99961 * 2 1 3 5 5 C 1.52999 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47651 * 59.99761 * 5 4 2 7 7 C 1.53006 * 109.46505 * 300.00266 * 6 5 4 8 8 H 1.08998 * 109.47237 * 299.99177 * 7 6 5 9 9 O 1.42907 * 109.46402 * 179.97438 * 7 6 5 10 10 C 1.35635 * 117.00258 * 83.06349 * 9 7 6 11 11 C 1.38446 * 120.26501 * 354.70640 * 10 9 7 12 12 C 1.38304 * 120.04974 * 179.97438 * 11 10 9 13 13 C 1.38825 * 120.59317 * 0.02562 * 12 11 10 14 14 C 1.36484 * 120.53577 * 0.02562 * 13 12 11 15 15 C 1.40728 * 119.93196 * 359.97438 * 14 13 12 16 16 C 1.41155 * 120.29045 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99816 * 212.63474 * 16 15 14 18 18 C 1.39931 * 120.00161 * 32.62517 * 16 15 14 19 19 N 1.30875 * 120.00006 * 10.05857 * 18 16 15 20 20 Si 1.86802 * 120.00180 * 190.05560 * 18 16 15 21 21 H 1.48493 * 109.47231 * 60.00314 * 20 18 16 22 22 H 1.48504 * 109.47117 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46838 * 300.00054 * 20 18 16 24 24 C 1.52996 * 109.47419 * 60.00118 * 7 6 5 25 25 H 1.08999 * 109.47350 * 179.97438 * 24 7 6 26 26 C 1.52998 * 109.47176 * 59.99391 * 24 7 6 27 27 H 1.09008 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47507 * 300.00236 * 1 2 3 29 29 H 1.09000 * 109.47288 * 60.00341 * 1 2 3 30 30 H 1.08991 * 109.47208 * 59.99867 * 4 2 1 31 31 H 1.08997 * 109.46803 * 299.99740 * 4 2 1 32 32 H 1.09007 * 109.46905 * 299.99441 * 5 4 2 33 33 H 1.08999 * 109.47314 * 179.97438 * 5 4 2 34 34 H 1.08993 * 109.47188 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46701 * 59.99771 * 6 5 4 36 36 H 1.07993 * 119.97368 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.70329 * 180.27853 * 12 11 10 38 38 H 1.07998 * 119.72947 * 180.02562 * 13 12 11 39 39 H 1.08007 * 120.03154 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99524 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47623 * 60.00264 * 26 24 7 42 42 H 1.09006 * 109.46943 * 180.02562 * 26 24 7 43 43 H 1.09002 * 109.47182 * 299.99837 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5694 -0.7219 1.2496 8 1 3.9331 0.3056 1.2498 9 8 4.0449 -1.3962 2.4164 10 6 5.2985 -1.0921 2.8356 11 6 6.1003 -0.2498 2.0843 12 6 7.3777 0.0577 2.5162 13 6 7.8694 -0.4718 3.7015 14 6 7.1001 -1.3055 4.4603 15 6 5.7970 -1.6334 4.0420 16 6 4.9950 -2.4953 4.8207 17 1 4.2861 -3.1536 4.3407 18 6 5.1186 -2.4969 6.2146 19 7 5.8267 -1.5711 6.8098 20 14 4.2730 -3.8206 7.2257 21 1 4.7819 -5.1550 6.8190 22 1 4.5572 -3.6001 8.6665 23 1 2.8073 -3.7585 6.9956 24 6 2.0395 -0.7215 1.2493 25 1 1.6761 -0.2080 2.1395 26 6 1.5291 -2.1638 1.2491 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -0.2075 -2.1391 31 1 1.6767 -1.7489 -1.2491 32 1 3.9336 0.3059 -1.2487 33 1 3.9334 -1.2360 -2.1385 34 1 5.1695 -1.4432 0.0009 35 1 3.7158 -2.4708 0.0002 36 1 5.7280 0.1674 1.1604 37 1 7.9967 0.7190 1.9280 38 1 8.8688 -0.2220 4.0257 39 1 7.4907 -1.7126 5.3814 40 1 5.9120 -1.5721 7.7761 41 1 1.8920 -2.6779 2.1390 42 1 0.4390 -2.1635 1.2484 43 1 1.8924 -2.6777 0.3591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:14 Heat of formation + Delta-G solvation = -46.637429 kcal Electronic energy + Delta-G solvation = -21931.331074 eV Core-core repulsion = 18940.260866 eV Total energy + Delta-G solvation = -2991.070208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.88007 -37.93040 -35.75971 -33.47983 -32.49214 -31.01543 -29.56564 -28.42858 -27.08243 -25.57162 -25.02010 -22.36798 -21.52266 -20.81745 -19.99330 -18.25466 -17.36506 -16.49143 -15.61516 -15.18570 -14.91763 -14.45660 -14.21259 -14.09163 -13.71759 -13.31432 -12.84425 -12.56318 -12.51559 -12.37728 -12.18816 -11.91415 -11.71001 -11.46635 -11.35745 -11.08765 -11.03594 -10.79165 -10.76540 -10.56522 -10.42513 -10.27163 -10.15145 -9.91507 -9.63542 -9.47757 -9.26916 -9.11153 -7.36611 -6.88376 -6.56722 -4.18714 2.82969 3.04027 3.14060 3.18080 3.25950 4.05245 4.21607 4.73680 4.76234 4.85272 5.04171 5.21767 5.33124 5.44930 5.46760 5.54150 5.66106 5.67626 5.76456 5.77562 5.82448 5.93125 6.05387 6.08168 6.12864 6.16862 6.19931 6.22479 6.30865 6.36128 6.48048 6.52933 6.55755 6.63949 6.80469 7.00191 7.20452 7.37433 7.42229 7.79212 7.86978 8.10805 8.28899 8.48713 8.80459 8.95682 9.16774 10.37798 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.006008 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.825430 B = 4659.012580 C = 5839.207204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.147 4.147 7 C 0.096 3.904 8 H 0.059 0.941 9 O -0.298 6.298 10 C 0.024 3.976 11 C -0.185 4.185 12 C -0.206 4.206 13 C -0.133 4.133 14 C -0.134 4.134 15 C 0.097 3.903 16 C -0.450 4.450 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.812 5.812 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.078 4.078 25 H 0.075 0.925 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.278 0.722 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 1.355 -11.017 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.184 4.184 7 C 0.038 3.962 8 H 0.077 0.923 9 O -0.212 6.212 10 C -0.020 4.020 11 C -0.204 4.204 12 C -0.226 4.226 13 C -0.151 4.151 14 C -0.154 4.154 15 C 0.094 3.906 16 C -0.481 4.481 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.439 5.439 20 Si 0.734 3.266 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.097 4.097 25 H 0.093 0.907 26 C -0.203 4.203 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.142 1.291 -10.682 12.914 hybrid contribution -0.152 -0.196 0.407 0.477 sum -7.294 1.095 -10.275 12.648 Atomic orbital electron populations 1.21859 0.95188 1.02004 1.01331 1.21104 0.95458 0.99267 0.94513 0.91380 1.21651 0.95613 1.00978 0.97087 1.21477 0.95512 1.00626 0.97676 1.22152 1.01461 1.00545 0.94273 1.22057 0.93392 0.95708 0.85039 0.92294 1.86002 1.29407 1.63397 1.42406 1.19291 0.83998 1.00848 0.97902 1.20687 0.96027 1.03580 1.00067 1.20172 0.96337 1.06942 0.99130 1.20385 0.98564 1.00373 0.95818 1.20833 0.92924 1.01258 1.00395 1.17056 0.91910 0.92760 0.88826 1.19292 1.18919 1.19213 0.90642 0.90368 1.25821 0.94531 0.95442 0.98503 1.69800 1.33674 1.29330 1.11120 0.86357 0.80394 0.81638 0.78192 1.19049 1.20552 1.19167 1.21101 0.93449 0.97400 0.97729 0.90704 1.21895 0.99788 0.95936 1.02723 0.92243 0.92693 0.93008 0.92370 0.91519 0.92215 0.92069 0.91246 0.91022 0.88508 0.89460 0.89409 0.86257 0.91169 0.91440 0.93168 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.84 37.15 0.33 -1.16 16 2 C -0.08 -1.01 2.50 -90.62 -0.23 -1.23 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.12 -1.27 4.93 -26.73 -0.13 -1.40 16 5 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 6 C -0.15 -2.27 4.87 -26.73 -0.13 -2.40 16 7 C 0.10 1.68 1.81 -26.73 -0.05 1.64 16 8 H 0.06 1.07 6.44 -51.93 -0.33 0.74 16 9 O -0.30 -6.78 8.52 -18.60 -0.16 -6.94 16 10 C 0.02 0.60 6.61 -38.34 -0.25 0.35 16 11 C -0.18 -4.22 8.17 -39.48 -0.32 -4.54 16 12 C -0.21 -4.70 10.04 -39.34 -0.39 -5.10 16 13 C -0.13 -3.18 9.97 -40.00 -0.40 -3.58 16 14 C -0.13 -3.56 8.58 -39.27 -0.34 -3.90 16 15 C 0.10 2.65 5.51 -106.68 -0.59 2.07 16 16 C -0.45 -12.36 8.64 -37.84 -0.33 -12.69 16 17 H 0.08 2.13 7.76 -52.49 -0.41 1.72 16 18 C 0.07 1.87 5.24 -17.33 -0.09 1.78 16 19 N -0.81 -21.71 11.08 55.55 0.62 -21.10 16 20 Si 0.91 19.56 29.57 -169.99 -5.03 14.54 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C -0.08 -1.17 2.46 -90.62 -0.22 -1.39 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 C -0.15 -2.11 8.00 37.16 0.30 -1.81 16 27 H 0.06 0.59 6.43 -51.92 -0.33 0.26 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.17 6.70 -51.93 -0.35 0.83 16 35 H 0.07 1.12 6.43 -51.93 -0.33 0.79 16 36 H 0.10 1.95 5.36 -52.49 -0.28 1.67 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.24 6.49 -52.48 -0.34 2.90 16 40 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 42 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 43 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -28.12 324.93 -9.31 -37.43 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.64 Total: 6.10 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: -3.00 Total: -34.93 kcal Atomic # 7 Polarization: -21.71 SS G_CDS: 0.62 Total: -21.10 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.16 Total: -6.94 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.12 -9.31 -37.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.203 kcal (2) G-P(sol) polarization free energy of solvation -28.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds