Wall clock time and date at job start Mon Mar 30 2020 02:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47336 * 2 1 4 4 C 1.52996 * 109.47320 * 239.99961 * 2 1 3 5 5 C 1.52999 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47651 * 59.99761 * 5 4 2 7 7 C 1.53006 * 109.46505 * 300.00266 * 6 5 4 8 8 H 1.08998 * 109.47237 * 299.99177 * 7 6 5 9 9 O 1.42907 * 109.46402 * 179.97438 * 7 6 5 10 10 C 1.35635 * 117.00258 * 83.06349 * 9 7 6 11 11 C 1.38446 * 120.26501 * 354.70640 * 10 9 7 12 12 C 1.38304 * 120.04974 * 179.97438 * 11 10 9 13 13 C 1.38825 * 120.59317 * 0.02562 * 12 11 10 14 14 C 1.36484 * 120.53577 * 0.02562 * 13 12 11 15 15 C 1.40728 * 119.93196 * 359.97438 * 14 13 12 16 16 C 1.41155 * 120.29045 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99816 * 212.63474 * 16 15 14 18 18 C 1.39931 * 120.00161 * 32.62517 * 16 15 14 19 19 N 1.30875 * 120.00006 * 10.05857 * 18 16 15 20 20 Si 1.86802 * 120.00180 * 190.05560 * 18 16 15 21 21 H 1.48493 * 109.47231 * 60.00314 * 20 18 16 22 22 H 1.48504 * 109.47117 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46838 * 300.00054 * 20 18 16 24 24 C 1.52996 * 109.47419 * 60.00118 * 7 6 5 25 25 H 1.08999 * 109.47350 * 179.97438 * 24 7 6 26 26 C 1.52998 * 109.47176 * 59.99391 * 24 7 6 27 27 H 1.09008 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47507 * 300.00236 * 1 2 3 29 29 H 1.09000 * 109.47288 * 60.00341 * 1 2 3 30 30 H 1.08991 * 109.47208 * 59.99867 * 4 2 1 31 31 H 1.08997 * 109.46803 * 299.99740 * 4 2 1 32 32 H 1.09007 * 109.46905 * 299.99441 * 5 4 2 33 33 H 1.08999 * 109.47314 * 179.97438 * 5 4 2 34 34 H 1.08993 * 109.47188 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46701 * 59.99771 * 6 5 4 36 36 H 1.07993 * 119.97368 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.70329 * 180.27853 * 12 11 10 38 38 H 1.07998 * 119.72947 * 180.02562 * 13 12 11 39 39 H 1.08007 * 120.03154 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99524 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47623 * 60.00264 * 26 24 7 42 42 H 1.09006 * 109.46943 * 180.02562 * 26 24 7 43 43 H 1.09002 * 109.47182 * 299.99837 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5694 -0.7219 1.2496 8 1 3.9331 0.3056 1.2498 9 8 4.0449 -1.3962 2.4164 10 6 5.2985 -1.0921 2.8356 11 6 6.1003 -0.2498 2.0843 12 6 7.3777 0.0577 2.5162 13 6 7.8694 -0.4718 3.7015 14 6 7.1001 -1.3055 4.4603 15 6 5.7970 -1.6334 4.0420 16 6 4.9950 -2.4953 4.8207 17 1 4.2861 -3.1536 4.3407 18 6 5.1186 -2.4969 6.2146 19 7 5.8267 -1.5711 6.8098 20 14 4.2730 -3.8206 7.2257 21 1 4.7819 -5.1550 6.8190 22 1 4.5572 -3.6001 8.6665 23 1 2.8073 -3.7585 6.9956 24 6 2.0395 -0.7215 1.2493 25 1 1.6761 -0.2080 2.1395 26 6 1.5291 -2.1638 1.2491 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -0.2075 -2.1391 31 1 1.6767 -1.7489 -1.2491 32 1 3.9336 0.3059 -1.2487 33 1 3.9334 -1.2360 -2.1385 34 1 5.1695 -1.4432 0.0009 35 1 3.7158 -2.4708 0.0002 36 1 5.7280 0.1674 1.1604 37 1 7.9967 0.7190 1.9280 38 1 8.8688 -0.2220 4.0257 39 1 7.4907 -1.7126 5.3814 40 1 5.9120 -1.5721 7.7761 41 1 1.8920 -2.6779 2.1390 42 1 0.4390 -2.1635 1.2484 43 1 1.8924 -2.6777 0.3591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:13 Heat of formation + Delta-G solvation = -59.484634 kcal Electronic energy + Delta-G solvation = -21931.888171 eV Core-core repulsion = 18940.260866 eV Total energy + Delta-G solvation = -2991.627305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28380 -39.52285 -37.45272 -35.42818 -33.57587 -32.29004 -31.41989 -30.26626 -28.22315 -27.04393 -26.60294 -23.76134 -22.72434 -22.64501 -21.56089 -19.56902 -19.11353 -18.25609 -17.19553 -16.61544 -16.29637 -15.88967 -15.88324 -15.65297 -14.91973 -14.73899 -14.36958 -14.29989 -13.85847 -13.64454 -13.45825 -13.25106 -13.16527 -12.87017 -12.79364 -12.65055 -12.47694 -12.42048 -12.19463 -11.98110 -11.69292 -11.59289 -11.57113 -11.34982 -11.06911 -11.05642 -10.99726 -10.73666 -9.32103 -8.79459 -8.49977 -6.23125 0.94563 1.10704 1.36309 1.47921 1.50082 2.24269 2.69921 2.81016 3.64903 3.71934 3.74827 3.97189 4.13707 4.19634 4.22852 4.35303 4.42117 4.45226 4.52850 4.57183 4.68387 4.73730 4.74573 4.82785 4.98724 5.01885 5.04381 5.09968 5.14455 5.15018 5.22740 5.24530 5.30697 5.39479 5.41588 5.46787 5.49408 5.51276 5.68384 5.89243 5.93519 6.14973 6.33469 6.53940 6.84849 6.95963 7.28761 8.45148 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.006008 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.825430 B = 4659.012580 C = 5839.207204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.110 4.110 6 C -0.140 4.140 7 C 0.086 3.914 8 H 0.053 0.947 9 O -0.320 6.320 10 C 0.018 3.982 11 C -0.187 4.187 12 C -0.197 4.197 13 C -0.142 4.142 14 C -0.153 4.153 15 C 0.055 3.945 16 C -0.485 4.485 17 H 0.064 0.936 18 C 0.031 3.969 19 N -0.844 5.844 20 Si 0.978 3.022 21 H -0.261 1.261 22 H -0.266 1.266 23 H -0.265 1.265 24 C -0.078 4.078 25 H 0.055 0.945 26 C -0.141 4.141 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.284 0.716 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 1.970 -13.179 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.178 4.178 7 C 0.030 3.970 8 H 0.071 0.929 9 O -0.235 6.235 10 C -0.027 4.027 11 C -0.206 4.206 12 C -0.216 4.216 13 C -0.161 4.161 14 C -0.173 4.173 15 C 0.053 3.947 16 C -0.516 4.516 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.472 5.472 20 Si 0.800 3.200 21 H -0.185 1.185 22 H -0.190 1.190 23 H -0.190 1.190 24 C -0.096 4.096 25 H 0.073 0.927 26 C -0.198 4.198 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.105 1.919 -12.866 15.326 hybrid contribution 0.177 -0.293 0.954 1.014 sum -7.928 1.626 -11.911 14.401 Atomic orbital electron populations 1.21842 0.93553 1.02524 1.02183 1.21092 0.96743 0.98866 0.93091 0.91252 1.21656 0.94490 1.01386 0.97412 1.21477 0.96506 1.00535 0.96214 1.22084 1.00313 1.00523 0.94892 1.22452 0.95174 0.95122 0.84279 0.92930 1.85979 1.28555 1.64310 1.44691 1.19465 0.85135 1.00580 0.97511 1.21010 0.95977 1.02818 1.00755 1.20641 0.96435 1.05964 0.98528 1.20678 0.99520 0.99795 0.96057 1.20806 0.93321 1.02682 1.00522 1.17445 0.92683 0.94075 0.90480 1.19391 1.19900 1.20433 0.91884 0.91743 1.26616 0.95069 0.97372 0.99009 1.69861 1.34957 1.30744 1.11672 0.85313 0.79056 0.78653 0.76996 1.18497 1.19026 1.19014 1.21152 0.91478 0.98007 0.98982 0.92651 1.21846 1.01167 0.95303 1.01476 0.91885 0.93118 0.90949 0.89730 0.91219 0.91729 0.90219 0.92992 0.91554 0.85763 0.85773 0.86862 0.88028 0.90580 0.94986 0.90906 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.84 71.98 0.64 -1.86 16 2 C -0.08 -1.69 2.50 -10.80 -0.03 -1.72 16 3 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.06 4.93 30.59 0.15 -1.91 16 5 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 6 C -0.14 -4.22 4.87 30.60 0.15 -4.07 16 7 C 0.09 3.05 1.81 30.59 0.06 3.10 16 8 H 0.05 1.90 6.44 -2.39 -0.02 1.88 16 9 O -0.32 -15.19 8.52 -89.49 -0.76 -15.95 16 10 C 0.02 0.92 6.61 23.08 0.15 1.08 16 11 C -0.19 -8.44 8.17 22.33 0.18 -8.25 16 12 C -0.20 -8.64 10.04 22.43 0.23 -8.42 16 13 C -0.14 -6.78 9.97 22.00 0.22 -6.56 16 14 C -0.15 -8.43 8.58 22.47 0.19 -8.24 16 15 C 0.06 3.17 5.51 -21.20 -0.12 3.06 16 16 C -0.49 -28.16 8.64 23.40 0.20 -27.96 16 17 H 0.06 3.75 7.76 -2.91 -0.02 3.73 16 18 C 0.03 1.67 5.24 85.25 0.45 2.12 16 19 N -0.84 -46.87 11.08 21.83 0.24 -46.62 16 20 Si 0.98 41.35 29.57 68.60 2.03 43.38 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 C -0.08 -2.29 2.46 -10.79 -0.03 -2.32 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 C -0.14 -4.02 8.00 71.98 0.58 -3.45 16 27 H 0.06 1.05 6.43 -2.38 -0.02 1.04 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.27 6.43 -2.39 -0.02 1.26 16 32 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.72 6.70 -2.39 -0.02 1.71 16 35 H 0.07 2.04 6.43 -2.39 -0.02 2.03 16 36 H 0.12 4.83 5.36 -2.91 -0.02 4.81 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 39 H 0.10 5.81 6.49 -2.91 -0.02 5.80 16 40 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 41 H 0.03 1.12 7.68 -2.39 -0.02 1.10 16 42 H 0.07 1.71 6.43 -2.38 -0.02 1.70 16 43 H 0.07 1.75 4.81 -2.39 -0.01 1.74 16 Total: -1.00 -63.94 324.93 5.70 -58.24 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.99 Total: 28.51 kcal Atomic # 6 Polarization: -70.76 SS G_CDS: 3.20 Total: -67.56 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.24 Total: -46.62 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.76 Total: -15.95 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -63.94 5.70 -58.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.244 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds