Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50701 * 119.99920 * 2 1 4 4 C 1.30999 * 120.00197 * 180.02562 * 2 1 3 5 5 C 1.50701 * 120.00037 * 353.86411 * 4 2 1 6 6 C 1.53004 * 109.46656 * 121.48482 * 5 4 2 7 7 C 1.53007 * 109.46931 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46963 * 55.00170 * 7 6 5 9 9 C 1.52997 * 109.47041 * 175.00080 * 7 6 5 10 10 O 1.42903 * 109.46653 * 295.00249 * 7 6 5 11 11 C 1.35641 * 116.99759 * 155.49224 * 10 7 6 12 12 C 1.38453 * 120.26782 * 5.36898 * 11 10 7 13 13 C 1.38304 * 120.05066 * 179.75102 * 12 11 10 14 14 C 1.38820 * 120.59358 * 0.54980 * 13 12 11 15 15 C 1.36484 * 120.53788 * 359.70446 * 14 13 12 16 16 C 1.40734 * 119.92928 * 0.02562 * 15 14 13 17 17 C 1.41153 * 120.28591 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99148 * 146.57697 * 17 16 15 19 19 C 1.39931 * 120.00465 * 326.57364 * 17 16 15 20 20 N 1.30867 * 119.99967 * 345.28164 * 19 17 16 21 21 Si 1.86803 * 120.00011 * 165.28342 * 19 17 16 22 22 H 1.48492 * 109.47206 * 59.99732 * 21 19 17 23 23 H 1.48504 * 109.46783 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46953 * 299.99829 * 21 19 17 25 25 H 1.09005 * 109.46636 * 265.08455 * 1 2 3 26 26 H 1.08993 * 109.47476 * 25.08583 * 1 2 3 27 27 H 1.08995 * 109.47241 * 145.09007 * 1 2 3 28 28 H 1.09002 * 109.47134 * 270.00327 * 3 2 1 29 29 H 1.08996 * 109.47339 * 29.99850 * 3 2 1 30 30 H 1.09002 * 109.47482 * 150.00377 * 3 2 1 31 31 H 1.08001 * 120.00307 * 173.59908 * 4 2 1 32 32 H 1.08995 * 109.47654 * 241.48696 * 5 4 2 33 33 H 1.09000 * 109.46676 * 1.48875 * 5 4 2 34 34 H 1.08999 * 109.47078 * 299.99725 * 6 5 4 35 35 H 1.09000 * 109.47258 * 60.00749 * 6 5 4 36 36 H 1.08999 * 109.47463 * 299.99756 * 9 7 6 37 37 H 1.09001 * 109.47168 * 60.00216 * 9 7 6 38 38 H 1.08998 * 109.47187 * 179.97438 * 9 7 6 39 39 H 1.08002 * 119.97115 * 0.02562 * 12 11 10 40 40 H 1.08002 * 119.70450 * 180.27470 * 13 12 11 41 41 H 1.07998 * 119.72781 * 179.72333 * 14 13 12 42 42 H 1.07993 * 120.03682 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00127 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4150 -2.4359 0.1384 6 6 1.6990 -3.3192 -1.0782 7 6 0.9402 -4.6404 -0.9375 8 1 -0.1199 -4.4362 -0.7866 9 6 1.1235 -5.4716 -2.2088 10 8 1.4499 -5.3654 0.1835 11 6 0.6171 -6.2633 0.7664 12 6 -0.6227 -6.5288 0.2101 13 6 -1.4662 -7.4490 0.8053 14 6 -1.0873 -8.1061 1.9680 15 6 0.1271 -7.8591 2.5398 16 6 1.0053 -6.9312 1.9497 17 6 2.2633 -6.6704 2.5345 18 1 3.1115 -6.4359 1.9083 19 6 2.4114 -6.7155 3.9252 20 7 1.3541 -6.7110 4.6963 21 14 4.1184 -6.7822 4.6810 22 1 4.8859 -5.5768 4.2774 23 1 4.0031 -6.8239 6.1610 24 1 4.8231 -7.9999 4.2054 25 1 -0.3633 -0.0881 1.0240 26 1 -0.3634 0.9306 -0.4357 27 1 -0.3633 -0.8427 -0.5881 28 1 2.4421 1.6198 -1.0277 29 1 1.6714 2.0648 0.5138 30 1 3.2129 1.1748 0.5138 31 1 3.2370 -1.1374 -0.1048 32 1 1.7421 -2.9478 1.0434 33 1 0.3453 -2.2360 0.2005 34 1 1.3719 -2.8073 -1.9832 35 1 2.7687 -3.5192 -1.1403 36 1 0.7347 -4.9186 -3.0638 37 1 2.1835 -5.6758 -2.3597 38 1 0.5833 -6.4130 -2.1084 39 1 -0.9294 -6.0200 -0.6919 40 1 -2.4303 -7.6550 0.3641 41 1 -1.7589 -8.8188 2.4235 42 1 0.4138 -8.3752 3.4441 43 1 1.4568 -6.7427 5.6603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = -29.080229 kcal Electronic energy + Delta-G solvation = -21055.479134 eV Core-core repulsion = 18065.170263 eV Total energy + Delta-G solvation = -2990.308871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.01075 -37.16790 -36.19902 -33.47878 -33.17341 -30.37018 -29.40677 -28.52063 -27.79212 -26.31105 -25.03782 -22.71665 -21.74213 -20.61682 -19.66244 -17.72224 -17.46332 -16.64380 -15.32607 -15.04603 -14.70700 -14.39848 -14.16147 -14.01474 -13.83080 -13.51039 -12.92323 -12.79160 -12.50659 -12.40010 -12.14413 -12.03738 -11.82797 -11.64072 -11.53842 -11.36902 -11.21067 -11.02074 -10.79342 -10.72493 -10.46170 -10.43118 -10.15089 -9.82960 -9.67484 -9.30015 -9.08015 -8.49409 -7.39098 -6.89912 -6.59623 -4.18327 2.30204 2.82405 3.02391 3.14138 3.18157 3.25577 4.05113 4.32917 4.73875 4.83305 5.01450 5.22680 5.31233 5.42191 5.49515 5.51770 5.59325 5.66201 5.70139 5.77574 5.86697 5.89914 5.96347 5.99346 6.03814 6.07080 6.12553 6.29425 6.35605 6.42602 6.50562 6.56423 6.60060 6.84932 6.98415 7.09027 7.19410 7.35798 7.38011 7.77879 7.85038 8.08986 8.27632 8.46630 8.79022 8.94447 9.15849 10.36129 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.005644 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.504822 B = 4959.491520 C = 6240.101533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.152 4.152 3 C -0.113 4.113 4 C -0.149 4.149 5 C -0.099 4.099 6 C -0.103 4.103 7 C 0.082 3.918 8 H 0.062 0.938 9 C -0.176 4.176 10 O -0.298 6.298 11 C 0.024 3.976 12 C -0.183 4.183 13 C -0.207 4.207 14 C -0.131 4.131 15 C -0.137 4.137 16 C 0.101 3.899 17 C -0.454 4.454 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.808 5.808 21 Si 0.905 3.095 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 9.275 -8.163 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.152 4.152 3 C -0.170 4.170 4 C -0.167 4.167 5 C -0.136 4.136 6 C -0.141 4.141 7 C 0.025 3.975 8 H 0.079 0.921 9 C -0.234 4.234 10 O -0.213 6.213 11 C -0.020 4.020 12 C -0.202 4.202 13 C -0.227 4.227 14 C -0.149 4.149 15 C -0.157 4.157 16 C 0.099 3.901 17 C -0.484 4.484 18 H 0.097 0.903 19 C -0.140 4.140 20 N -0.434 5.434 21 Si 0.730 3.270 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.190 1.190 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.198 9.334 -7.854 12.201 hybrid contribution 0.459 -0.007 0.317 0.557 sum 0.656 9.328 -7.538 12.010 Atomic orbital electron populations 1.20848 0.92629 1.01851 1.02095 1.21539 0.95737 0.94893 1.03000 1.20775 0.99567 0.95142 1.01479 1.22737 0.99422 0.94018 1.00492 1.20815 0.99955 0.93144 0.99678 1.21548 1.01287 0.93399 0.97836 1.22154 0.97932 0.91252 0.86197 0.92058 1.22345 1.02709 1.01011 0.97307 1.86021 1.39937 1.51755 1.43544 1.19267 0.90045 0.95017 0.97712 1.20684 0.95577 1.02905 1.01066 1.20158 0.99380 1.03693 0.99474 1.20361 0.97140 1.00842 0.96585 1.20726 0.94559 0.99218 1.01160 1.17030 0.94138 0.90391 0.88580 1.19271 0.95720 1.42220 0.91233 0.90291 1.25799 0.98162 0.92643 0.97404 1.69812 1.30684 1.37219 1.05729 0.86418 0.82932 0.79873 0.77747 1.19132 1.20559 1.19009 0.91695 0.92518 0.91429 0.92087 0.92178 0.92146 0.87642 0.89298 0.91313 0.91262 0.91185 0.92388 0.92045 0.91826 0.88525 0.89423 0.89400 0.86848 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.00 36.00 0.32 -1.00 16 2 C -0.15 -1.84 6.05 -101.07 -0.61 -2.45 16 3 C -0.11 -1.12 10.00 36.01 0.36 -0.76 16 4 C -0.15 -2.00 9.10 -36.03 -0.33 -2.33 16 5 C -0.10 -1.52 5.26 -27.88 -0.15 -1.67 16 6 C -0.10 -1.52 4.90 -26.73 -0.13 -1.65 16 7 C 0.08 1.42 2.23 -26.73 -0.06 1.36 16 8 H 0.06 1.07 6.35 -51.93 -0.33 0.74 16 9 C -0.18 -2.69 9.16 37.16 0.34 -2.35 16 10 O -0.30 -6.72 8.73 -18.62 -0.16 -6.88 16 11 C 0.02 0.59 6.63 -38.33 -0.25 0.34 16 12 C -0.18 -4.14 8.23 -39.48 -0.32 -4.47 16 13 C -0.21 -4.69 10.04 -39.34 -0.39 -5.08 16 14 C -0.13 -3.11 9.97 -40.00 -0.40 -3.50 16 15 C -0.14 -3.60 8.59 -39.27 -0.34 -3.94 16 16 C 0.10 2.75 5.48 -106.68 -0.58 2.16 16 17 C -0.45 -12.41 8.61 -37.84 -0.33 -12.74 16 18 H 0.08 2.15 7.80 -52.48 -0.41 1.74 16 19 C 0.08 1.96 5.14 -17.33 -0.09 1.87 16 20 N -0.81 -21.53 11.40 55.55 0.63 -20.89 16 21 Si 0.91 19.48 29.58 -169.99 -5.03 14.45 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.07 0.77 6.53 -51.93 -0.34 0.43 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.11 1.35 8.05 -52.49 -0.42 0.93 16 32 H 0.09 1.66 7.82 -51.93 -0.41 1.25 16 33 H 0.07 1.03 5.56 -51.93 -0.29 0.74 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.05 6.87 -51.93 -0.36 0.69 16 39 H 0.10 1.92 5.42 -52.49 -0.28 1.63 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.11 3.05 6.73 -52.49 -0.35 2.69 16 43 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -28.27 348.11 -9.24 -37.51 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.97 Total: 6.78 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: -2.96 Total: -36.21 kcal Atomic # 7 Polarization: -21.53 SS G_CDS: 0.63 Total: -20.89 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.16 Total: -6.88 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.27 -9.24 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.431 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds