Wall clock time and date at job start Mon Mar 30 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47520 * 239.99267 * 2 1 3 5 5 C 1.53001 * 109.47147 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46977 * 60.00295 * 5 4 2 7 7 H 1.08996 * 109.46843 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47133 * 59.99765 * 6 5 4 9 9 C 1.52999 * 109.46941 * 299.99831 * 6 5 4 10 10 H 1.09000 * 109.47001 * 299.99794 * 9 6 5 11 11 O 1.42900 * 109.47038 * 180.02562 * 9 6 5 12 12 C 1.35639 * 117.00251 * 158.48885 * 11 9 6 13 13 C 1.38451 * 120.26625 * 5.49508 * 12 11 9 14 14 C 1.38302 * 120.05331 * 179.97438 * 13 12 11 15 15 C 1.38822 * 120.59116 * 0.04413 * 14 13 12 16 16 C 1.36500 * 120.53643 * 359.69218 * 15 14 13 17 17 C 1.40721 * 119.92919 * 0.54121 * 16 15 14 18 18 C 1.41153 * 120.28807 * 179.76277 * 17 16 15 19 19 H 1.08001 * 119.99547 * 159.02287 * 18 17 16 20 20 C 1.39926 * 120.00394 * 338.74961 * 18 17 16 21 21 N 1.30872 * 119.99526 * 328.71055 * 20 18 17 22 22 Si 1.86796 * 120.00374 * 148.70899 * 20 18 17 23 23 H 1.48502 * 109.47141 * 94.98915 * 22 20 18 24 24 H 1.48504 * 109.47292 * 214.98831 * 22 20 18 25 25 H 1.48503 * 109.47007 * 334.98863 * 22 20 18 26 26 C 1.53002 * 109.47520 * 60.00274 * 9 6 5 27 27 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47081 * 300.00814 * 1 2 3 29 29 H 1.09001 * 109.46845 * 60.00884 * 1 2 3 30 30 H 1.09005 * 109.46526 * 60.00328 * 4 2 1 31 31 H 1.09000 * 109.47001 * 300.00480 * 4 2 1 32 32 H 1.08994 * 109.47132 * 300.00178 * 5 4 2 33 33 H 1.08998 * 109.46707 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.46858 * 299.99725 * 8 6 5 35 35 H 1.09001 * 109.47072 * 60.00206 * 8 6 5 36 36 H 1.09001 * 109.46834 * 180.02562 * 8 6 5 37 37 H 1.08002 * 119.97384 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.70579 * 180.02562 * 14 13 12 39 39 H 1.08002 * 119.73188 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.03491 * 180.27608 * 16 15 14 41 41 H 0.97000 * 119.99600 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.46823 * 59.99225 * 26 9 6 43 43 H 1.08998 * 109.47081 * 180.02562 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 1 5.1695 -1.4434 0.0011 8 6 3.5690 -2.8857 0.0004 9 6 3.5694 -0.7220 1.2498 10 1 3.9332 0.3055 1.2499 11 8 4.0457 -1.3956 2.4166 12 6 4.0827 -0.6803 3.5685 13 6 3.5663 0.6036 3.6096 14 6 3.6058 1.3287 4.7867 15 6 4.1616 0.7817 5.9351 16 6 4.6728 -0.4839 5.9232 17 6 4.6486 -1.2398 4.7364 18 6 5.1797 -2.5474 4.7143 19 1 4.8738 -3.2414 3.9454 20 6 6.1067 -2.9427 5.6850 21 7 6.9297 -2.0649 6.1996 22 14 6.1694 -4.7231 6.2465 23 1 7.2051 -5.4509 5.4700 24 1 6.5069 -4.7749 7.6918 25 1 4.8460 -5.3592 6.0242 26 6 2.0394 -0.7215 1.2494 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6768 -0.2075 -2.1392 31 1 1.6767 -1.7490 -1.2490 32 1 3.9338 0.3056 -1.2485 33 1 3.9334 -1.2362 -2.1384 34 1 2.4790 -2.8853 0.0002 35 1 3.9324 -3.3997 -0.8895 36 1 3.9315 -3.3996 0.8907 37 1 3.1322 1.0393 2.7218 38 1 3.2010 2.3296 4.8125 39 1 4.1856 1.3604 6.8466 40 1 5.0992 -0.9032 6.8225 41 1 7.5726 -2.3390 6.8723 42 1 1.6758 -1.7490 1.2492 43 1 1.6761 -0.2071 2.1391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:13 Heat of formation + Delta-G solvation = -49.179430 kcal Electronic energy + Delta-G solvation = -21911.470793 eV Core-core repulsion = 18920.290355 eV Total energy + Delta-G solvation = -2991.180438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.80557 -37.80573 -35.69354 -33.62160 -33.18236 -30.27934 -29.36027 -28.39612 -27.78012 -25.21044 -24.99996 -22.62011 -21.37989 -20.61465 -20.07257 -18.42633 -17.37106 -16.48335 -15.67384 -15.10746 -14.83322 -14.50777 -14.19049 -14.10665 -13.56980 -13.22439 -12.94368 -12.66373 -12.63731 -12.34318 -12.08830 -11.81632 -11.71650 -11.60695 -11.38263 -11.13986 -11.04692 -10.83548 -10.74697 -10.61747 -10.40893 -10.27689 -10.16474 -9.91166 -9.66051 -9.47636 -9.28675 -8.94939 -7.49320 -6.99697 -6.73929 -4.13724 2.79807 3.06709 3.10707 3.14110 3.28438 3.97488 4.26582 4.59754 4.76764 4.83390 5.03668 5.22398 5.33170 5.45638 5.52794 5.58443 5.69094 5.70157 5.74606 5.76508 5.86029 5.98311 6.03620 6.12017 6.15444 6.17789 6.21651 6.25110 6.27164 6.38228 6.50673 6.54640 6.59086 6.64876 6.79873 7.03917 7.13618 7.35807 7.39496 7.80268 7.84971 8.13972 8.28322 8.49501 8.74940 8.89060 9.18772 10.14235 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.005748 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.038694 B = 4869.873937 C = 5796.414860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.084 4.084 7 H 0.075 0.925 8 C -0.144 4.144 9 C 0.097 3.903 10 H 0.058 0.942 11 O -0.300 6.300 12 C 0.009 3.991 13 C -0.172 4.172 14 C -0.227 4.227 15 C -0.119 4.119 16 C -0.165 4.165 17 C 0.103 3.897 18 C -0.452 4.452 19 H 0.085 0.915 20 C 0.085 3.915 21 N -0.776 5.776 22 Si 0.895 3.105 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.141 4.141 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.281 0.719 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 0.996 -10.654 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.103 4.103 7 H 0.093 0.907 8 C -0.202 4.202 9 C 0.039 3.961 10 H 0.076 0.924 11 O -0.214 6.214 12 C -0.035 4.035 13 C -0.191 4.191 14 C -0.247 4.247 15 C -0.138 4.138 16 C -0.185 4.185 17 C 0.100 3.900 18 C -0.480 4.480 19 H 0.103 0.897 20 C -0.135 4.135 21 N -0.400 5.400 22 Si 0.719 3.281 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.182 1.182 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.537 0.827 -10.526 12.419 hybrid contribution 0.094 -0.364 0.357 0.518 sum -6.443 0.464 -10.169 12.047 Atomic orbital electron populations 1.21809 0.95400 1.01682 1.01352 1.21084 0.95306 0.99503 0.94887 0.91490 1.21654 0.95564 1.00916 0.97192 1.21537 0.95677 1.00430 0.97241 1.21086 1.00588 0.95841 0.92764 0.90707 1.21841 1.01029 0.95517 1.01766 1.22024 0.92810 0.95902 0.85317 0.92420 1.85969 1.81672 1.38935 1.14863 1.19068 1.07202 0.91270 0.85950 1.20658 1.05603 0.95088 0.97791 1.20051 1.11301 0.99302 0.94025 1.20301 1.00793 0.96154 0.96503 1.20602 1.05617 0.94833 0.97416 1.16997 0.91506 0.93228 0.88250 1.19362 1.20525 0.97390 1.10749 0.89702 1.25907 0.93281 0.99489 0.94834 1.69956 1.11869 1.37040 1.21131 0.86517 0.79877 0.83232 0.78468 1.19577 1.20031 1.18197 1.22225 0.96359 1.01587 0.97718 0.92779 0.92674 0.93023 0.92388 0.91528 0.92080 0.91708 0.92490 0.93536 0.91413 0.88622 0.89657 0.89628 0.87187 0.90820 0.91037 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.10 2.72 -90.62 -0.25 -1.35 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.28 4.93 -26.73 -0.13 -1.41 16 5 C -0.11 -1.32 5.45 -26.73 -0.15 -1.46 16 6 C -0.08 -1.26 2.94 -90.62 -0.27 -1.53 16 7 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 8 C -0.14 -2.08 8.35 37.16 0.31 -1.77 16 9 C 0.10 1.72 1.81 -26.73 -0.05 1.67 16 10 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 11 O -0.30 -6.85 8.39 -18.62 -0.16 -7.00 16 12 C 0.01 0.23 6.60 -38.33 -0.25 -0.02 16 13 C -0.17 -3.98 8.10 -39.48 -0.32 -4.30 16 14 C -0.23 -5.26 10.04 -39.34 -0.39 -5.66 16 15 C -0.12 -2.88 9.97 -39.99 -0.40 -3.28 16 16 C -0.17 -4.38 8.73 -39.27 -0.34 -4.72 16 17 C 0.10 2.82 5.59 -106.68 -0.60 2.22 16 18 C -0.45 -12.32 8.67 -37.84 -0.33 -12.65 16 19 H 0.08 2.31 7.69 -52.49 -0.40 1.90 16 20 C 0.09 2.17 4.82 -17.33 -0.08 2.09 16 21 N -0.78 -20.27 11.65 55.55 0.65 -19.62 16 22 Si 0.90 18.86 29.66 -169.99 -5.04 13.82 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 26 C -0.14 -2.21 4.11 -26.73 -0.11 -2.32 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 37 H 0.10 1.96 5.29 -52.49 -0.28 1.68 16 38 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.11 2.96 6.43 -52.49 -0.34 2.62 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 43 H 0.07 1.22 6.51 -51.93 -0.34 0.88 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -27.94 328.56 -9.41 -37.35 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.80 Total: 6.22 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: -3.01 Total: -35.72 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.65 Total: -19.62 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.16 Total: -7.00 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.04 Total: 13.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.94 -9.41 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.826 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds