Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47520 * 239.99267 * 2 1 3 5 5 C 1.53001 * 109.47147 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46977 * 60.00295 * 5 4 2 7 7 H 1.08996 * 109.46843 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47133 * 59.99765 * 6 5 4 9 9 C 1.52999 * 109.46941 * 299.99831 * 6 5 4 10 10 H 1.09000 * 109.47001 * 299.99794 * 9 6 5 11 11 O 1.42900 * 109.47038 * 180.02562 * 9 6 5 12 12 C 1.35639 * 117.00251 * 158.48885 * 11 9 6 13 13 C 1.38451 * 120.26625 * 5.49508 * 12 11 9 14 14 C 1.38302 * 120.05331 * 179.97438 * 13 12 11 15 15 C 1.38822 * 120.59116 * 0.04413 * 14 13 12 16 16 C 1.36500 * 120.53643 * 359.69218 * 15 14 13 17 17 C 1.40721 * 119.92919 * 0.54121 * 16 15 14 18 18 C 1.41153 * 120.28807 * 179.76277 * 17 16 15 19 19 H 1.08001 * 119.99547 * 159.02287 * 18 17 16 20 20 C 1.39926 * 120.00394 * 338.74961 * 18 17 16 21 21 N 1.30872 * 119.99526 * 328.71055 * 20 18 17 22 22 Si 1.86796 * 120.00374 * 148.70899 * 20 18 17 23 23 H 1.48502 * 109.47141 * 94.98915 * 22 20 18 24 24 H 1.48504 * 109.47292 * 214.98831 * 22 20 18 25 25 H 1.48503 * 109.47007 * 334.98863 * 22 20 18 26 26 C 1.53002 * 109.47520 * 60.00274 * 9 6 5 27 27 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47081 * 300.00814 * 1 2 3 29 29 H 1.09001 * 109.46845 * 60.00884 * 1 2 3 30 30 H 1.09005 * 109.46526 * 60.00328 * 4 2 1 31 31 H 1.09000 * 109.47001 * 300.00480 * 4 2 1 32 32 H 1.08994 * 109.47132 * 300.00178 * 5 4 2 33 33 H 1.08998 * 109.46707 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.46858 * 299.99725 * 8 6 5 35 35 H 1.09001 * 109.47072 * 60.00206 * 8 6 5 36 36 H 1.09001 * 109.46834 * 180.02562 * 8 6 5 37 37 H 1.08002 * 119.97384 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.70579 * 180.02562 * 14 13 12 39 39 H 1.08002 * 119.73188 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.03491 * 180.27608 * 16 15 14 41 41 H 0.97000 * 119.99600 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.46823 * 59.99225 * 26 9 6 43 43 H 1.08998 * 109.47081 * 180.02562 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 1 5.1695 -1.4434 0.0011 8 6 3.5690 -2.8857 0.0004 9 6 3.5694 -0.7220 1.2498 10 1 3.9332 0.3055 1.2499 11 8 4.0457 -1.3956 2.4166 12 6 4.0827 -0.6803 3.5685 13 6 3.5663 0.6036 3.6096 14 6 3.6058 1.3287 4.7867 15 6 4.1616 0.7817 5.9351 16 6 4.6728 -0.4839 5.9232 17 6 4.6486 -1.2398 4.7364 18 6 5.1797 -2.5474 4.7143 19 1 4.8738 -3.2414 3.9454 20 6 6.1067 -2.9427 5.6850 21 7 6.9297 -2.0649 6.1996 22 14 6.1694 -4.7231 6.2465 23 1 7.2051 -5.4509 5.4700 24 1 6.5069 -4.7749 7.6918 25 1 4.8460 -5.3592 6.0242 26 6 2.0394 -0.7215 1.2494 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6768 -0.2075 -2.1392 31 1 1.6767 -1.7490 -1.2490 32 1 3.9338 0.3056 -1.2485 33 1 3.9334 -1.2362 -2.1384 34 1 2.4790 -2.8853 0.0002 35 1 3.9324 -3.3997 -0.8895 36 1 3.9315 -3.3996 0.8907 37 1 3.1322 1.0393 2.7218 38 1 3.2010 2.3296 4.8125 39 1 4.1856 1.3604 6.8466 40 1 5.0992 -0.9032 6.8225 41 1 7.5726 -2.3390 6.8723 42 1 1.6758 -1.7490 1.2492 43 1 1.6761 -0.2071 2.1391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = -61.733547 kcal Electronic energy + Delta-G solvation = -21912.015180 eV Core-core repulsion = 18920.290355 eV Total energy + Delta-G solvation = -2991.724825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.23615 -39.41161 -37.37609 -35.54364 -34.28772 -31.94609 -30.88854 -30.20674 -28.90028 -27.05034 -26.21024 -23.97526 -22.99501 -22.20140 -21.52066 -19.72326 -19.20846 -18.25665 -17.18910 -16.69124 -16.14012 -16.07961 -15.85431 -15.44031 -14.89857 -14.72761 -14.44724 -14.17221 -13.95042 -13.68149 -13.57968 -13.44860 -12.98729 -12.89206 -12.77864 -12.62746 -12.54453 -12.40669 -12.17976 -11.89021 -11.79875 -11.69765 -11.59895 -11.34138 -11.04293 -11.01283 -10.87549 -10.77548 -9.46500 -8.90740 -8.64214 -6.15704 0.93913 1.12515 1.35668 1.45302 1.55436 2.20448 2.64466 2.76081 3.65267 3.71624 3.75229 3.98591 4.12595 4.17951 4.25370 4.36842 4.41785 4.48204 4.52979 4.55348 4.69017 4.74232 4.75931 4.90640 4.93434 5.00116 5.05010 5.07440 5.12180 5.17906 5.20264 5.22218 5.31601 5.37335 5.43804 5.45849 5.48863 5.51080 5.65206 5.85366 5.93814 6.17677 6.32436 6.55623 6.79858 6.90460 7.31454 8.26025 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.005748 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.038694 B = 4869.873937 C = 5796.414860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.085 4.085 7 H 0.058 0.942 8 C -0.140 4.140 9 C 0.088 3.912 10 H 0.050 0.950 11 O -0.322 6.322 12 C 0.001 3.999 13 C -0.175 4.175 14 C -0.222 4.222 15 C -0.128 4.128 16 C -0.186 4.186 17 C 0.065 3.935 18 C -0.489 4.489 19 H 0.069 0.931 20 C 0.048 3.952 21 N -0.808 5.808 22 Si 0.969 3.031 23 H -0.261 1.261 24 H -0.261 1.261 25 H -0.262 1.262 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.291 0.709 42 H 0.065 0.935 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 1.425 -12.407 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.103 4.103 7 H 0.077 0.923 8 C -0.197 4.197 9 C 0.031 3.969 10 H 0.068 0.932 11 O -0.237 6.237 12 C -0.044 4.044 13 C -0.193 4.193 14 C -0.241 4.241 15 C -0.146 4.146 16 C -0.206 4.206 17 C 0.062 3.938 18 C -0.518 4.518 19 H 0.088 0.912 20 C -0.170 4.170 21 N -0.433 5.433 22 Si 0.789 3.211 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.186 1.186 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.685 1.274 -12.291 14.552 hybrid contribution 0.421 -0.384 0.828 1.005 sum -7.264 0.891 -11.464 13.601 Atomic orbital electron populations 1.21787 0.93986 1.02075 1.02124 1.21082 0.96438 0.99174 0.93662 0.91313 1.21657 0.94660 1.01273 0.97332 1.21530 0.96403 1.00395 0.95874 1.21152 0.99729 0.96393 0.93045 0.92335 1.21794 1.01581 0.95073 1.01207 1.22417 0.94397 0.95561 0.84513 0.93180 1.85945 1.82101 1.40096 1.15572 1.19260 1.06721 0.92018 0.86375 1.20962 1.05004 0.94380 0.98991 1.20497 1.09724 1.00544 0.93345 1.20598 1.00357 0.95547 0.98118 1.20602 1.07037 0.96118 0.96850 1.17411 0.92827 0.93974 0.89584 1.19439 1.22365 0.97748 1.12208 0.91249 1.26692 0.92147 1.03968 0.94184 1.69962 1.12383 1.39222 1.21738 0.85411 0.79680 0.77363 0.78603 1.18536 1.18475 1.18613 1.22138 0.94511 1.01491 0.98921 0.92613 0.93335 0.90854 0.89717 0.91233 0.91672 0.89506 0.91511 0.91091 0.94920 0.86084 0.86282 0.87112 0.88630 0.89832 0.91680 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 2 C -0.08 -1.89 2.72 -10.79 -0.03 -1.92 16 3 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 4 C -0.11 -2.08 4.93 30.59 0.15 -1.93 16 5 C -0.10 -2.19 5.45 30.60 0.17 -2.02 16 6 C -0.08 -2.49 2.94 -10.79 -0.03 -2.52 16 7 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 8 C -0.14 -3.97 8.35 71.98 0.60 -3.37 16 9 C 0.09 3.14 1.81 30.59 0.06 3.19 16 10 H 0.05 1.84 6.55 -2.39 -0.02 1.83 16 11 O -0.32 -15.38 8.39 -89.53 -0.75 -16.13 16 12 C 0.00 0.04 6.60 23.08 0.15 0.19 16 13 C -0.17 -8.06 8.10 22.34 0.18 -7.88 16 14 C -0.22 -10.03 10.04 22.42 0.23 -9.80 16 15 C -0.13 -6.19 9.97 22.00 0.22 -5.97 16 16 C -0.19 -10.24 8.73 22.47 0.20 -10.05 16 17 C 0.06 3.70 5.59 -21.20 -0.12 3.59 16 18 C -0.49 -28.15 8.67 23.40 0.20 -27.95 16 19 H 0.07 4.04 7.69 -2.91 -0.02 4.02 16 20 C 0.05 2.51 4.82 85.24 0.41 2.92 16 21 N -0.81 -43.61 11.65 21.83 0.25 -43.36 16 22 Si 0.97 39.77 29.66 68.60 2.03 41.81 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 C -0.13 -4.09 4.11 30.60 0.13 -3.97 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.29 6.43 -2.39 -0.02 1.27 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.74 4.81 -2.39 -0.01 1.73 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.03 1.14 7.68 -2.39 -0.02 1.12 16 37 H 0.12 4.86 5.29 -2.91 -0.02 4.84 16 38 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.10 5.39 6.43 -2.91 -0.02 5.37 16 41 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 42 H 0.06 2.06 6.43 -2.39 -0.02 2.05 16 43 H 0.05 1.72 6.51 -2.39 -0.02 1.71 16 Total: -1.00 -63.40 328.56 5.69 -57.71 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.98 Total: 29.50 kcal Atomic # 6 Polarization: -72.70 SS G_CDS: 3.17 Total: -69.53 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.25 Total: -43.36 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.75 Total: -16.13 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.81 kcal Total: -63.40 5.69 -57.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.022 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds