Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.53003 * 109.46981 * 239.99607 * 2 1 3 5 5 C 1.53006 * 109.46716 * 180.02562 * 4 2 1 6 6 C 1.52990 * 109.47495 * 60.00351 * 5 4 2 7 7 H 1.08997 * 109.47433 * 59.99579 * 6 5 4 8 8 C 1.53000 * 109.47207 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47061 * 299.99878 * 6 5 4 10 10 H 1.08998 * 109.47008 * 299.99635 * 9 6 5 11 11 O 1.42901 * 109.47426 * 180.02562 * 9 6 5 12 12 C 1.35637 * 117.00363 * 155.29025 * 11 9 6 13 13 C 1.38450 * 120.26561 * 5.34043 * 12 11 9 14 14 C 1.38303 * 120.04933 * 179.75361 * 13 12 11 15 15 C 1.38822 * 120.59273 * 0.55283 * 14 13 12 16 16 C 1.36490 * 120.53626 * 359.70652 * 15 14 13 17 17 C 1.40715 * 119.93165 * 0.02562 * 16 15 14 18 18 C 1.41152 * 120.29079 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99882 * 151.79791 * 18 17 16 20 20 C 1.39931 * 120.00066 * 331.80079 * 18 17 16 21 21 N 1.30866 * 120.00097 * 164.30140 * 20 18 17 22 22 Si 1.86798 * 120.00158 * 344.30587 * 20 18 17 23 23 H 1.48495 * 109.47346 * 95.29904 * 22 20 18 24 24 H 1.48504 * 109.47312 * 215.30349 * 22 20 18 25 25 H 1.48506 * 109.46886 * 335.29811 * 22 20 18 26 26 C 1.53000 * 109.47132 * 59.99928 * 9 6 5 27 27 H 1.08998 * 109.46879 * 300.00112 * 1 2 3 28 28 H 1.08996 * 109.46697 * 60.00350 * 1 2 3 29 29 H 1.08997 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47113 * 299.99938 * 4 2 1 31 31 H 1.09000 * 109.46681 * 60.00625 * 4 2 1 32 32 H 1.08997 * 109.47123 * 299.99741 * 5 4 2 33 33 H 1.09006 * 109.46909 * 180.02562 * 5 4 2 34 34 H 1.09009 * 109.46574 * 179.97438 * 8 6 5 35 35 H 1.08995 * 109.47049 * 299.99159 * 8 6 5 36 36 H 1.08998 * 109.47414 * 60.00028 * 8 6 5 37 37 H 1.08002 * 119.97022 * 0.02945 * 13 12 11 38 38 H 1.08004 * 119.70172 * 180.28414 * 14 13 12 39 39 H 1.08001 * 119.73165 * 179.72027 * 15 14 13 40 40 H 1.08003 * 120.03339 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00288 * 180.02562 * 21 20 18 42 42 H 1.09009 * 109.46963 * 180.02562 * 26 9 6 43 43 H 1.08997 * 109.47146 * 60.00431 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0003 7 1 3.7159 -2.4709 0.0002 8 6 5.6095 -1.4445 0.0003 9 6 3.5695 -0.7222 1.2496 10 1 3.9333 0.3053 1.2498 11 8 4.0459 -1.3957 2.4164 12 6 4.1461 -0.6624 3.5530 13 6 3.6925 0.6454 3.5820 14 6 3.7922 1.3874 4.7448 15 6 4.3557 0.8371 5.8880 16 6 4.8154 -0.4481 5.8848 17 6 4.7199 -1.2251 4.7155 18 6 5.1924 -2.5551 4.7039 19 1 4.7487 -3.2800 4.0375 20 6 6.2356 -2.9345 5.5559 21 7 6.4716 -4.2025 5.7771 22 14 7.2913 -1.6309 6.3778 23 1 6.7642 -1.3520 7.7378 24 1 8.6903 -2.1186 6.4795 25 1 7.2588 -0.3856 5.5693 26 6 2.0395 -0.7216 1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9337 0.3056 -1.2487 33 1 3.9334 -1.2354 -2.1391 34 1 5.9725 -1.9582 0.8906 35 1 5.9725 -1.9587 -0.8896 36 1 5.9736 -0.4171 0.0003 37 1 3.2565 1.0849 2.6970 38 1 3.4324 2.4056 4.7624 39 1 4.4307 1.4306 6.7872 40 1 5.2519 -0.8682 6.7789 41 1 7.1945 -4.4655 6.3680 42 1 1.6762 -0.2074 2.1391 43 1 1.6759 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -50.049315 kcal Electronic energy + Delta-G solvation = -21924.243395 eV Core-core repulsion = 18933.025236 eV Total energy + Delta-G solvation = -2991.218159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.77151 -37.93359 -35.90054 -33.57697 -33.48326 -30.66344 -29.78737 -28.66262 -28.33943 -24.99290 -24.14432 -22.83550 -21.60747 -20.43439 -20.17076 -19.56898 -17.41396 -16.96810 -15.53076 -15.05447 -14.81520 -14.56576 -14.17807 -13.95989 -13.81806 -13.62133 -13.16009 -12.74281 -12.73615 -12.38031 -12.19560 -12.03133 -11.86384 -11.60190 -11.58792 -11.34773 -10.91303 -10.90013 -10.67455 -10.65284 -10.56886 -10.40410 -10.10779 -10.04183 -9.68809 -9.60950 -9.47118 -9.07955 -7.66946 -7.09877 -6.86748 -4.31154 2.60699 2.70507 3.14493 3.26072 3.36439 4.03158 4.11228 4.55853 4.72116 4.79641 4.97159 5.13237 5.19955 5.42813 5.45250 5.52274 5.58187 5.61320 5.66514 5.72321 5.82072 5.93949 5.94652 6.00582 6.02017 6.07211 6.12856 6.19124 6.20579 6.28580 6.31775 6.43549 6.50389 6.60756 6.62836 6.71041 6.88925 7.04244 7.20987 7.56037 7.63505 7.84779 8.08383 8.31350 8.47186 8.85118 8.92960 10.15735 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.005808 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.313439 B = 4819.633645 C = 5504.805555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.084 4.084 7 H 0.076 0.924 8 C -0.146 4.146 9 C 0.094 3.906 10 H 0.062 0.938 11 O -0.295 6.295 12 C 0.034 3.966 13 C -0.172 4.172 14 C -0.217 4.217 15 C -0.103 4.103 16 C -0.224 4.224 17 C 0.078 3.922 18 C -0.425 4.425 19 H 0.095 0.905 20 C 0.081 3.919 21 N -0.811 5.811 22 Si 0.911 3.089 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.243 1.243 26 C -0.139 4.139 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.284 0.716 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 6.733 -10.890 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.102 4.102 7 H 0.095 0.905 8 C -0.204 4.204 9 C 0.037 3.963 10 H 0.080 0.920 11 O -0.209 6.209 12 C -0.010 4.010 13 C -0.191 4.191 14 C -0.237 4.237 15 C -0.122 4.122 16 C -0.243 4.243 17 C 0.075 3.925 18 C -0.454 4.454 19 H 0.113 0.887 20 C -0.137 4.137 21 N -0.436 5.436 22 Si 0.739 3.261 23 H -0.199 1.199 24 H -0.222 1.222 25 H -0.166 1.166 26 C -0.177 4.177 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.310 6.264 -10.835 13.595 hybrid contribution 0.382 0.692 0.509 0.941 sum -4.928 6.956 -10.325 13.390 Atomic orbital electron populations 1.21811 0.95293 1.01791 1.01391 1.21089 0.95414 0.99488 0.94786 0.91408 1.21630 0.95570 1.00797 0.97267 1.21573 0.95344 1.00676 0.97247 1.21125 0.96365 1.00136 0.92622 0.90514 1.21779 0.94614 1.01650 1.02324 1.22155 0.92745 0.96240 0.85170 0.92020 1.86027 1.81614 1.37471 1.15824 1.19042 1.05457 0.90211 0.86299 1.20745 1.05630 0.94515 0.98255 1.20117 1.10624 0.98963 0.93947 1.20241 0.99803 0.95265 0.96871 1.20481 1.10681 0.96010 0.97147 1.17163 0.93188 0.93589 0.88600 1.19339 1.14317 0.93997 1.17751 0.88738 1.26155 0.97570 0.96116 0.93873 1.69694 1.27138 1.17429 1.29354 0.86327 0.77401 0.82369 0.80033 1.19875 1.22154 1.16631 1.22173 0.96119 1.01593 0.97804 0.92666 0.92954 0.92687 0.91839 0.92183 0.92005 0.91607 0.90928 0.93191 0.93226 0.88056 0.88968 0.88998 0.87970 0.90587 0.91153 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.09 -1.05 2.72 -90.62 -0.25 -1.30 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.23 5.20 -26.73 -0.14 -1.37 16 5 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 6 C -0.08 -1.23 2.46 -90.62 -0.22 -1.45 16 7 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 8 C -0.15 -2.20 9.05 37.16 0.34 -1.87 16 9 C 0.09 1.60 1.55 -26.73 -0.04 1.56 16 10 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 11 O -0.30 -6.55 8.46 -18.61 -0.16 -6.71 16 12 C 0.03 0.82 6.63 -38.33 -0.25 0.57 16 13 C -0.17 -3.71 8.24 -39.48 -0.33 -4.03 16 14 C -0.22 -4.62 10.04 -39.34 -0.39 -5.01 16 15 C -0.10 -2.31 9.97 -40.00 -0.40 -2.71 16 16 C -0.22 -5.54 6.97 -39.28 -0.27 -5.82 16 17 C 0.08 2.04 5.18 -106.68 -0.55 1.49 16 18 C -0.43 -11.87 9.23 -37.84 -0.35 -12.22 16 19 H 0.09 2.82 7.87 -52.48 -0.41 2.41 16 20 C 0.08 2.17 5.44 -17.33 -0.09 2.07 16 21 N -0.81 -22.12 13.93 55.55 0.77 -21.34 16 22 Si 0.91 21.34 24.40 -169.99 -4.15 17.19 16 23 H -0.27 -6.16 6.72 56.52 0.38 -5.78 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.84 6.64 56.52 0.38 -5.46 16 26 C -0.14 -2.10 4.46 -26.73 -0.12 -2.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.31 7.68 -51.92 -0.40 0.91 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.91 5.43 -52.49 -0.29 1.62 16 38 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.10 2.51 4.32 -52.48 -0.23 2.29 16 41 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 42 H 0.07 1.15 6.89 -51.92 -0.36 0.79 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -28.08 329.45 -8.55 -36.63 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.11 Total: 4.14 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: -2.87 Total: -34.88 kcal Atomic # 7 Polarization: -22.12 SS G_CDS: 0.77 Total: -21.34 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.16 Total: -6.71 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.08 -8.55 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.420 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds