Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.53003 * 109.46981 * 239.99607 * 2 1 3 5 5 C 1.53006 * 109.46716 * 180.02562 * 4 2 1 6 6 C 1.52990 * 109.47495 * 60.00351 * 5 4 2 7 7 H 1.08997 * 109.47433 * 59.99579 * 6 5 4 8 8 C 1.53000 * 109.47207 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47061 * 299.99878 * 6 5 4 10 10 H 1.08998 * 109.47008 * 299.99635 * 9 6 5 11 11 O 1.42901 * 109.47426 * 180.02562 * 9 6 5 12 12 C 1.35637 * 117.00363 * 155.29025 * 11 9 6 13 13 C 1.38450 * 120.26561 * 5.34043 * 12 11 9 14 14 C 1.38303 * 120.04933 * 179.75361 * 13 12 11 15 15 C 1.38822 * 120.59273 * 0.55283 * 14 13 12 16 16 C 1.36490 * 120.53626 * 359.70652 * 15 14 13 17 17 C 1.40715 * 119.93165 * 0.02562 * 16 15 14 18 18 C 1.41152 * 120.29079 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99882 * 151.79791 * 18 17 16 20 20 C 1.39931 * 120.00066 * 331.80079 * 18 17 16 21 21 N 1.30866 * 120.00097 * 164.30140 * 20 18 17 22 22 Si 1.86798 * 120.00158 * 344.30587 * 20 18 17 23 23 H 1.48495 * 109.47346 * 95.29904 * 22 20 18 24 24 H 1.48504 * 109.47312 * 215.30349 * 22 20 18 25 25 H 1.48506 * 109.46886 * 335.29811 * 22 20 18 26 26 C 1.53000 * 109.47132 * 59.99928 * 9 6 5 27 27 H 1.08998 * 109.46879 * 300.00112 * 1 2 3 28 28 H 1.08996 * 109.46697 * 60.00350 * 1 2 3 29 29 H 1.08997 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47113 * 299.99938 * 4 2 1 31 31 H 1.09000 * 109.46681 * 60.00625 * 4 2 1 32 32 H 1.08997 * 109.47123 * 299.99741 * 5 4 2 33 33 H 1.09006 * 109.46909 * 180.02562 * 5 4 2 34 34 H 1.09009 * 109.46574 * 179.97438 * 8 6 5 35 35 H 1.08995 * 109.47049 * 299.99159 * 8 6 5 36 36 H 1.08998 * 109.47414 * 60.00028 * 8 6 5 37 37 H 1.08002 * 119.97022 * 0.02945 * 13 12 11 38 38 H 1.08004 * 119.70172 * 180.28414 * 14 13 12 39 39 H 1.08001 * 119.73165 * 179.72027 * 15 14 13 40 40 H 1.08003 * 120.03339 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00288 * 180.02562 * 21 20 18 42 42 H 1.09009 * 109.46963 * 180.02562 * 26 9 6 43 43 H 1.08997 * 109.47146 * 60.00431 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0003 7 1 3.7159 -2.4709 0.0002 8 6 5.6095 -1.4445 0.0003 9 6 3.5695 -0.7222 1.2496 10 1 3.9333 0.3053 1.2498 11 8 4.0459 -1.3957 2.4164 12 6 4.1461 -0.6624 3.5530 13 6 3.6925 0.6454 3.5820 14 6 3.7922 1.3874 4.7448 15 6 4.3557 0.8371 5.8880 16 6 4.8154 -0.4481 5.8848 17 6 4.7199 -1.2251 4.7155 18 6 5.1924 -2.5551 4.7039 19 1 4.7487 -3.2800 4.0375 20 6 6.2356 -2.9345 5.5559 21 7 6.4716 -4.2025 5.7771 22 14 7.2913 -1.6309 6.3778 23 1 6.7642 -1.3520 7.7378 24 1 8.6903 -2.1186 6.4795 25 1 7.2588 -0.3856 5.5693 26 6 2.0395 -0.7216 1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9337 0.3056 -1.2487 33 1 3.9334 -1.2354 -2.1391 34 1 5.9725 -1.9582 0.8906 35 1 5.9725 -1.9587 -0.8896 36 1 5.9736 -0.4171 0.0003 37 1 3.2565 1.0849 2.6970 38 1 3.4324 2.4056 4.7624 39 1 4.4307 1.4306 6.7872 40 1 5.2519 -0.8682 6.7789 41 1 7.1945 -4.4655 6.3680 42 1 1.6762 -0.2074 2.1391 43 1 1.6759 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = -64.195887 kcal Electronic energy + Delta-G solvation = -21924.856836 eV Core-core repulsion = 18933.025236 eV Total energy + Delta-G solvation = -2991.831600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.23239 -39.44300 -37.47584 -35.49299 -34.62275 -32.46824 -31.13235 -30.33922 -29.42904 -26.92247 -25.24388 -24.18716 -23.16885 -22.12534 -21.36483 -20.77089 -19.33823 -18.66946 -17.21538 -16.50679 -16.24177 -16.00504 -15.58680 -15.52725 -15.18647 -15.09518 -14.50961 -14.31612 -14.08143 -13.70903 -13.63455 -13.55906 -13.22157 -12.99985 -12.73471 -12.68056 -12.60359 -12.51952 -12.18295 -11.91406 -11.76781 -11.66172 -11.55175 -11.48413 -11.30030 -11.17398 -10.93248 -10.80490 -9.54962 -8.90495 -8.85263 -6.35972 0.74770 0.87275 1.24220 1.40031 1.47893 2.12557 2.61994 2.65036 3.48939 3.64850 3.73273 3.94657 4.06214 4.09448 4.16463 4.29813 4.37298 4.44041 4.47118 4.51079 4.57998 4.68617 4.74918 4.78503 4.85731 4.89511 5.00070 5.04553 5.07084 5.07225 5.10388 5.24295 5.24634 5.30575 5.31893 5.37984 5.41234 5.45594 5.57548 5.75163 5.77080 5.98707 6.20369 6.37197 6.50878 6.81462 7.15573 8.24047 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.005808 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.313439 B = 4819.633645 C = 5504.805555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.103 4.103 6 C -0.083 4.083 7 H 0.062 0.938 8 C -0.143 4.143 9 C 0.086 3.914 10 H 0.066 0.934 11 O -0.324 6.324 12 C 0.028 3.972 13 C -0.174 4.174 14 C -0.192 4.192 15 C -0.116 4.116 16 C -0.229 4.229 17 C 0.043 3.957 18 C -0.462 4.462 19 H 0.048 0.952 20 C 0.041 3.959 21 N -0.858 5.858 22 Si 0.968 3.032 23 H -0.256 1.256 24 H -0.281 1.281 25 H -0.253 1.253 26 C -0.133 4.133 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.291 0.709 42 H 0.055 0.945 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 10.478 -12.210 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.140 4.140 6 C -0.102 4.102 7 H 0.080 0.920 8 C -0.201 4.201 9 C 0.029 3.971 10 H 0.083 0.917 11 O -0.239 6.239 12 C -0.017 4.017 13 C -0.193 4.193 14 C -0.212 4.212 15 C -0.134 4.134 16 C -0.248 4.248 17 C 0.041 3.959 18 C -0.492 4.492 19 H 0.066 0.934 20 C -0.171 4.171 21 N -0.486 5.486 22 Si 0.792 3.208 23 H -0.182 1.182 24 H -0.208 1.208 25 H -0.176 1.176 26 C -0.171 4.171 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.252 10.013 -12.162 16.949 hybrid contribution 0.500 -0.313 0.796 0.991 sum -5.752 9.700 -11.366 16.012 Atomic orbital electron populations 1.21794 0.94061 1.01915 1.02302 1.21086 0.96398 0.99427 0.93314 0.90497 1.21638 0.94824 1.00870 0.97663 1.21553 0.95948 1.00869 0.95661 1.21189 0.95943 0.99729 0.93341 0.91984 1.21742 0.95168 1.01803 1.01360 1.22552 0.94099 0.96285 0.84127 0.91655 1.86022 1.81984 1.39040 1.16840 1.19287 1.04722 0.91231 0.86444 1.21110 1.04927 0.93400 0.99862 1.20721 1.07164 1.00439 0.92827 1.20658 0.99346 0.94543 0.98870 1.20657 1.10582 0.97114 0.96452 1.17411 0.94702 0.93392 0.90425 1.19164 1.16541 0.94558 1.18980 0.93408 1.26830 0.98061 0.97926 0.94324 1.69733 1.28641 1.18813 1.31363 0.85461 0.76445 0.79386 0.79469 1.18154 1.20767 1.17640 1.22121 0.94544 1.01120 0.99326 0.93042 0.90761 0.93028 0.92220 0.89414 0.90968 0.89673 0.95228 0.90797 0.92445 0.85119 0.84748 0.85406 0.88228 0.89825 0.92610 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.08 -1.75 2.72 -10.79 -0.03 -1.78 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -2.04 5.20 30.60 0.16 -1.88 16 5 C -0.10 -2.06 5.20 30.59 0.16 -1.90 16 6 C -0.08 -2.42 2.46 -10.80 -0.03 -2.44 16 7 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 8 C -0.14 -4.36 9.05 71.98 0.65 -3.71 16 9 C 0.09 2.91 1.55 30.59 0.05 2.96 16 10 H 0.07 2.15 6.33 -2.39 -0.02 2.13 16 11 O -0.32 -15.11 8.46 -89.51 -0.76 -15.87 16 12 C 0.03 1.37 6.63 23.08 0.15 1.52 16 13 C -0.17 -7.11 8.24 22.34 0.18 -6.93 16 14 C -0.19 -7.40 10.04 22.43 0.23 -7.18 16 15 C -0.12 -4.82 9.97 22.00 0.22 -4.60 16 16 C -0.23 -11.22 6.97 22.47 0.16 -11.07 16 17 C 0.04 2.35 5.18 -21.20 -0.11 2.24 16 18 C -0.46 -27.81 9.23 23.40 0.22 -27.59 16 19 H 0.05 3.18 7.87 -2.91 -0.02 3.16 16 20 C 0.04 2.33 5.44 85.25 0.46 2.80 16 21 N -0.86 -49.74 13.93 21.83 0.30 -49.44 16 22 Si 0.97 45.03 24.40 68.60 1.67 46.70 16 23 H -0.26 -11.10 6.72 99.48 0.67 -10.43 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.25 -11.96 6.64 99.48 0.66 -11.30 16 26 C -0.13 -3.95 4.46 30.60 0.14 -3.81 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.03 1.13 7.68 -2.38 -0.02 1.11 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.13 4.51 5.43 -2.91 -0.02 4.50 16 38 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.10 4.86 4.32 -2.91 -0.01 4.85 16 41 H 0.29 15.16 8.30 -92.71 -0.77 14.39 16 42 H 0.06 1.78 6.89 -2.38 -0.02 1.77 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.71 329.45 5.37 -60.33 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.89 Total: 23.57 kcal Atomic # 6 Polarization: -68.56 SS G_CDS: 3.27 Total: -65.30 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.30 Total: -49.44 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.76 Total: -15.87 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.67 Total: 46.70 kcal Total: -65.71 5.37 -60.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.863 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds