Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46897 * 2 1 4 4 C 1.52998 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.31003 * 119.99656 * 124.99835 * 5 4 3 7 7 C 1.50696 * 120.00137 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46818 * 0.02562 * 7 6 5 9 9 C 1.52991 * 109.47453 * 240.00588 * 7 6 5 10 10 O 1.42897 * 109.47019 * 120.00262 * 7 6 5 11 11 C 1.35647 * 117.00100 * 204.06655 * 10 7 6 12 12 C 1.38448 * 120.26135 * 2.62323 * 11 10 7 13 13 C 1.38314 * 120.04238 * 179.75048 * 12 11 10 14 14 C 1.38812 * 120.59342 * 0.55845 * 13 12 11 15 15 C 1.36486 * 120.54154 * 359.69409 * 14 13 12 16 16 C 1.40729 * 119.92903 * 0.03099 * 15 14 13 17 17 C 1.41152 * 120.28980 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99909 * 150.42540 * 17 16 15 19 19 C 1.39932 * 120.00308 * 330.43146 * 17 16 15 20 20 N 1.30872 * 119.99626 * 349.48730 * 19 17 16 21 21 Si 1.86791 * 120.00238 * 169.49248 * 19 17 16 22 22 H 1.48499 * 109.47262 * 89.99657 * 21 19 17 23 23 H 1.48500 * 109.47109 * 209.99608 * 21 19 17 24 24 H 1.48496 * 109.46985 * 329.99498 * 21 19 17 25 25 H 1.08996 * 109.47119 * 60.00445 * 1 2 3 26 26 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47212 * 299.99768 * 1 2 3 28 28 H 1.08995 * 109.47015 * 239.99540 * 2 1 3 29 29 H 1.09006 * 109.46626 * 119.99704 * 2 1 3 30 30 H 1.09003 * 109.47376 * 300.00091 * 3 2 1 31 31 H 1.09008 * 109.47507 * 59.99709 * 3 2 1 32 32 H 1.08996 * 109.47338 * 299.99802 * 4 3 2 33 33 H 1.09005 * 109.47201 * 60.00116 * 4 3 2 34 34 H 1.07993 * 120.00043 * 305.00788 * 5 4 3 35 35 H 1.07997 * 119.99816 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.47215 * 300.00046 * 9 7 6 37 37 H 1.09006 * 109.47440 * 59.99887 * 9 7 6 38 38 H 1.09003 * 109.47148 * 179.97438 * 9 7 6 39 39 H 1.07992 * 119.97879 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.69774 * 180.27980 * 13 12 11 41 41 H 1.08006 * 119.72885 * 179.72223 * 14 13 12 42 42 H 1.07998 * 120.03701 * 180.02562 * 15 14 13 43 43 H 0.96999 * 119.99949 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.9037 3.2646 0.9295 7 6 5.4065 4.6852 0.9286 8 1 4.9722 5.2238 0.0863 9 6 6.9313 4.6865 0.8037 10 8 5.0280 5.3251 2.1489 11 6 4.9378 6.6785 2.1324 12 6 5.1534 7.3778 0.9571 13 6 5.0552 8.7574 0.9442 14 6 4.7523 9.4550 2.1054 15 6 4.5403 8.7903 3.2785 16 6 4.6289 7.3863 3.3159 17 6 4.4105 6.6911 4.5248 18 1 4.0101 5.6883 4.5062 19 6 4.7127 7.3012 5.7473 20 7 5.3841 8.4244 5.7696 21 14 4.1581 6.5126 7.3471 22 1 5.2112 5.5851 7.8329 23 1 3.9215 7.5688 8.3637 24 1 2.9008 5.7568 7.1166 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9330 0.9289 0.8908 33 1 3.9337 0.9286 -0.8892 34 1 3.7468 3.5509 -0.7666 35 1 5.2295 2.5769 1.6959 36 1 7.3654 4.1480 1.6462 37 1 7.2201 4.1983 -0.1272 38 1 7.2950 5.7141 0.8026 39 1 5.3940 6.8454 0.0488 40 1 5.2200 9.2969 0.0232 41 1 4.6835 10.5325 2.0804 42 1 4.3047 9.3411 4.1770 43 1 5.5939 8.8472 6.6170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -30.539075 kcal Electronic energy + Delta-G solvation = -20480.452922 eV Core-core repulsion = 17490.080791 eV Total energy + Delta-G solvation = -2990.372131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.95951 -36.89774 -36.09499 -33.90467 -33.50732 -31.18348 -29.51625 -28.50232 -28.25370 -25.11498 -24.30235 -22.34056 -21.17342 -20.86925 -19.99446 -19.32903 -17.41376 -16.53007 -15.80682 -15.35807 -14.76264 -14.42765 -14.15108 -14.04676 -13.78082 -13.60672 -13.15237 -12.83610 -12.49263 -12.44913 -12.20290 -11.92885 -11.72141 -11.53625 -11.38742 -11.26208 -11.14737 -11.05120 -10.95277 -10.73663 -10.65794 -10.44604 -10.26177 -9.87918 -9.64284 -9.33875 -9.13921 -8.93031 -7.38896 -6.91718 -6.58623 -4.19481 2.29273 2.81053 3.03629 3.13741 3.19079 3.25041 4.03737 4.38168 4.71558 4.74925 4.82601 4.96342 5.13046 5.19255 5.32482 5.50871 5.53598 5.55645 5.65958 5.66327 5.72674 5.76258 5.87035 5.90470 5.97253 6.02267 6.13938 6.16827 6.25767 6.27280 6.37876 6.50025 6.52890 6.80834 6.94334 7.01353 7.18645 7.36465 7.43388 7.78355 7.85586 8.11030 8.28164 8.48436 8.79047 8.94076 9.14940 10.34177 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004464 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.893081 B = 6270.527219 C = 7427.218250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.087 4.087 5 C -0.155 4.155 6 C -0.136 4.136 7 C 0.110 3.890 8 H 0.065 0.935 9 C -0.170 4.170 10 O -0.298 6.298 11 C 0.020 3.980 12 C -0.184 4.184 13 C -0.209 4.209 14 C -0.131 4.131 15 C -0.138 4.138 16 C 0.096 3.904 17 C -0.447 4.447 18 H 0.079 0.921 19 C 0.071 3.929 20 N -0.809 5.809 21 Si 0.910 3.090 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.262 1.262 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 -11.293 -8.742 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.124 4.124 5 C -0.173 4.173 6 C -0.154 4.154 7 C 0.053 3.947 8 H 0.083 0.917 9 C -0.227 4.227 10 O -0.213 6.213 11 C -0.024 4.024 12 C -0.203 4.203 13 C -0.228 4.228 14 C -0.150 4.150 15 C -0.158 4.158 16 C 0.094 3.906 17 C -0.477 4.477 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.436 5.436 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.226 -11.258 -8.399 14.411 hybrid contribution 0.044 -0.108 0.483 0.496 sum -3.182 -11.366 -7.916 14.212 Atomic orbital electron populations 1.21784 0.95988 1.01360 1.01968 1.21544 0.95821 0.97040 1.01817 1.21580 0.94808 0.96535 1.02590 1.20673 0.95580 0.94092 1.02100 1.22810 0.97401 0.97356 0.99753 1.22710 0.98078 0.95973 0.98606 1.21120 0.94395 0.90548 0.88650 0.91672 1.22248 0.95956 1.02928 1.01613 1.86051 1.84820 1.18143 1.32253 1.19249 1.06894 0.81028 0.95229 1.20630 1.08871 0.95032 0.95797 1.20156 1.12420 0.93183 0.97058 1.20394 1.03298 0.97580 0.93730 1.20917 1.04199 0.93789 0.96891 1.17070 0.92056 0.91415 0.90109 1.19378 1.37209 1.01419 0.89694 0.90250 1.25850 0.93025 0.94517 1.01029 1.69809 1.29268 1.16252 1.28271 0.86282 0.80105 0.79451 0.80666 1.19640 1.20302 1.18620 0.92804 0.92984 0.92600 0.92233 0.92060 0.91950 0.91523 0.91544 0.91428 0.87456 0.86916 0.91832 0.92318 0.91634 0.88590 0.89429 0.89374 0.85769 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.21 5.20 -26.73 -0.14 -1.35 16 4 C -0.09 -0.93 5.66 -27.88 -0.16 -1.09 16 5 C -0.16 -2.03 9.12 -36.02 -0.33 -2.36 16 6 C -0.14 -2.08 8.75 -36.03 -0.32 -2.40 16 7 C 0.11 1.99 2.61 -27.89 -0.07 1.92 16 8 H 0.07 1.15 5.62 -51.93 -0.29 0.86 16 9 C -0.17 -2.77 9.25 37.15 0.34 -2.43 16 10 O -0.30 -6.98 9.14 -18.64 -0.17 -7.15 16 11 C 0.02 0.51 6.60 -38.33 -0.25 0.26 16 12 C -0.18 -4.24 8.38 -39.48 -0.33 -4.57 16 13 C -0.21 -4.77 10.04 -39.34 -0.39 -5.17 16 14 C -0.13 -3.16 9.97 -40.00 -0.40 -3.56 16 15 C -0.14 -3.68 8.60 -39.27 -0.34 -4.02 16 16 C 0.10 2.65 5.55 -106.68 -0.59 2.06 16 17 C -0.45 -12.38 8.68 -37.84 -0.33 -12.71 16 18 H 0.08 2.19 7.71 -52.49 -0.40 1.79 16 19 C 0.07 1.84 5.25 -17.33 -0.09 1.75 16 20 N -0.81 -21.53 10.88 55.55 0.60 -20.93 16 21 Si 0.91 19.54 29.57 -169.99 -5.03 14.51 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 32 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.37 7.83 -52.49 -0.41 0.96 16 35 H 0.11 1.68 7.84 -52.49 -0.41 1.27 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.16 7.39 -51.93 -0.38 0.77 16 39 H 0.10 1.94 5.70 -52.49 -0.30 1.64 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.38 6.27 -52.49 -0.33 3.05 16 43 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -28.62 352.41 -9.61 -38.23 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.14 Total: 5.83 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -3.19 Total: -35.80 kcal Atomic # 7 Polarization: -21.53 SS G_CDS: 0.60 Total: -20.93 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.17 Total: -7.15 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.62 -9.61 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.694 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds