Wall clock time and date at job start Mon Mar 30 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46897 * 2 1 4 4 C 1.52998 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.31003 * 119.99656 * 124.99835 * 5 4 3 7 7 C 1.50696 * 120.00137 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46818 * 0.02562 * 7 6 5 9 9 C 1.52991 * 109.47453 * 240.00588 * 7 6 5 10 10 O 1.42897 * 109.47019 * 120.00262 * 7 6 5 11 11 C 1.35647 * 117.00100 * 204.06655 * 10 7 6 12 12 C 1.38448 * 120.26135 * 2.62323 * 11 10 7 13 13 C 1.38314 * 120.04238 * 179.75048 * 12 11 10 14 14 C 1.38812 * 120.59342 * 0.55845 * 13 12 11 15 15 C 1.36486 * 120.54154 * 359.69409 * 14 13 12 16 16 C 1.40729 * 119.92903 * 0.03099 * 15 14 13 17 17 C 1.41152 * 120.28980 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99909 * 150.42540 * 17 16 15 19 19 C 1.39932 * 120.00308 * 330.43146 * 17 16 15 20 20 N 1.30872 * 119.99626 * 349.48730 * 19 17 16 21 21 Si 1.86791 * 120.00238 * 169.49248 * 19 17 16 22 22 H 1.48499 * 109.47262 * 89.99657 * 21 19 17 23 23 H 1.48500 * 109.47109 * 209.99608 * 21 19 17 24 24 H 1.48496 * 109.46985 * 329.99498 * 21 19 17 25 25 H 1.08996 * 109.47119 * 60.00445 * 1 2 3 26 26 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47212 * 299.99768 * 1 2 3 28 28 H 1.08995 * 109.47015 * 239.99540 * 2 1 3 29 29 H 1.09006 * 109.46626 * 119.99704 * 2 1 3 30 30 H 1.09003 * 109.47376 * 300.00091 * 3 2 1 31 31 H 1.09008 * 109.47507 * 59.99709 * 3 2 1 32 32 H 1.08996 * 109.47338 * 299.99802 * 4 3 2 33 33 H 1.09005 * 109.47201 * 60.00116 * 4 3 2 34 34 H 1.07993 * 120.00043 * 305.00788 * 5 4 3 35 35 H 1.07997 * 119.99816 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.47215 * 300.00046 * 9 7 6 37 37 H 1.09006 * 109.47440 * 59.99887 * 9 7 6 38 38 H 1.09003 * 109.47148 * 179.97438 * 9 7 6 39 39 H 1.07992 * 119.97879 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.69774 * 180.27980 * 13 12 11 41 41 H 1.08006 * 119.72885 * 179.72223 * 14 13 12 42 42 H 1.07998 * 120.03701 * 180.02562 * 15 14 13 43 43 H 0.96999 * 119.99949 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.9037 3.2646 0.9295 7 6 5.4065 4.6852 0.9286 8 1 4.9722 5.2238 0.0863 9 6 6.9313 4.6865 0.8037 10 8 5.0280 5.3251 2.1489 11 6 4.9378 6.6785 2.1324 12 6 5.1534 7.3778 0.9571 13 6 5.0552 8.7574 0.9442 14 6 4.7523 9.4550 2.1054 15 6 4.5403 8.7903 3.2785 16 6 4.6289 7.3863 3.3159 17 6 4.4105 6.6911 4.5248 18 1 4.0101 5.6883 4.5062 19 6 4.7127 7.3012 5.7473 20 7 5.3841 8.4244 5.7696 21 14 4.1581 6.5126 7.3471 22 1 5.2112 5.5851 7.8329 23 1 3.9215 7.5688 8.3637 24 1 2.9008 5.7568 7.1166 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9330 0.9289 0.8908 33 1 3.9337 0.9286 -0.8892 34 1 3.7468 3.5509 -0.7666 35 1 5.2295 2.5769 1.6959 36 1 7.3654 4.1480 1.6462 37 1 7.2201 4.1983 -0.1272 38 1 7.2950 5.7141 0.8026 39 1 5.3940 6.8454 0.0488 40 1 5.2200 9.2969 0.0232 41 1 4.6835 10.5325 2.0804 42 1 4.3047 9.3411 4.1770 43 1 5.5939 8.8472 6.6170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:41 Heat of formation + Delta-G solvation = -42.755712 kcal Electronic energy + Delta-G solvation = -20480.982675 eV Core-core repulsion = 17490.080791 eV Total energy + Delta-G solvation = -2990.901884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68861 -38.38704 -37.30502 -35.44930 -35.02357 -32.42604 -31.35270 -30.36548 -29.28416 -27.06507 -25.35032 -23.77305 -22.70905 -22.00111 -21.51609 -20.58894 -19.28675 -18.29925 -17.26581 -16.63084 -16.21834 -15.95360 -15.89583 -15.36513 -14.88082 -14.68609 -14.61105 -14.35746 -14.05012 -13.76335 -13.44325 -13.30735 -13.05035 -12.97955 -12.87821 -12.73602 -12.60453 -12.26889 -12.16072 -12.04061 -11.91513 -11.70635 -11.59014 -11.42691 -11.28961 -11.11754 -11.06168 -10.06859 -9.33757 -8.82254 -8.50779 -6.23039 0.94355 1.09871 1.14290 1.36950 1.48334 1.51948 2.24269 2.78329 2.90634 3.68022 3.72661 3.94747 4.07128 4.12376 4.22566 4.25067 4.33067 4.40710 4.51867 4.54886 4.60031 4.63832 4.78851 4.82963 4.84733 4.95868 4.99462 5.04321 5.12378 5.16214 5.20340 5.23128 5.30722 5.39937 5.46034 5.48629 5.49998 5.70084 5.81633 5.88761 5.94132 6.16222 6.33111 6.54639 6.83959 6.95232 7.27205 8.43082 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004464 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.893081 B = 6270.527219 C = 7427.218250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.086 4.086 5 C -0.129 4.129 6 C -0.165 4.165 7 C 0.103 3.897 8 H 0.070 0.930 9 C -0.164 4.164 10 O -0.324 6.324 11 C 0.014 3.986 12 C -0.187 4.187 13 C -0.199 4.199 14 C -0.141 4.141 15 C -0.159 4.159 16 C 0.055 3.945 17 C -0.484 4.484 18 H 0.064 0.936 19 C 0.031 3.969 20 N -0.840 5.840 21 Si 0.980 3.020 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.263 1.263 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -12.425 -10.451 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.183 4.183 7 C 0.047 3.953 8 H 0.088 0.912 9 C -0.221 4.221 10 O -0.240 6.240 11 C -0.031 4.031 12 C -0.205 4.205 13 C -0.218 4.218 14 C -0.159 4.159 15 C -0.178 4.178 16 C 0.052 3.948 17 C -0.515 4.515 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.468 5.468 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.187 1.187 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.362 -12.390 -10.131 16.354 hybrid contribution 0.087 0.214 0.797 0.830 sum -3.275 -12.176 -9.334 15.688 Atomic orbital electron populations 1.21797 0.95726 1.02013 1.01704 1.21526 0.96061 0.95916 1.02453 1.21561 0.94405 0.97591 1.01863 1.20731 0.95779 0.92577 1.03233 1.23093 0.94728 0.98644 0.98263 1.22566 1.00744 0.94644 1.00364 1.21464 0.95604 0.91556 0.86708 0.91202 1.22205 0.94646 1.02103 1.03150 1.86016 1.84970 1.17375 1.35598 1.19418 1.06181 0.82156 0.95347 1.20978 1.07951 0.95427 0.96166 1.20635 1.09850 0.93345 0.97954 1.20693 1.02894 0.99033 0.93295 1.20898 1.05706 0.93765 0.97477 1.17461 0.93594 0.92349 0.91356 1.19472 1.39501 1.01320 0.91206 0.91755 1.26641 0.92523 0.95002 1.03949 1.69862 1.30014 1.17432 1.29482 0.85236 0.79471 0.78766 0.76390 1.19030 1.18720 1.18662 0.92483 0.91901 0.93491 0.90860 0.92140 0.91442 0.93525 0.91569 0.89089 0.86780 0.87032 0.92527 0.88860 0.93332 0.85556 0.85679 0.86840 0.87485 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.89 5.93 30.59 0.18 -1.71 16 3 C -0.12 -2.20 5.20 30.59 0.16 -2.04 16 4 C -0.09 -1.65 5.66 29.85 0.17 -1.48 16 5 C -0.13 -3.15 9.12 25.65 0.23 -2.92 16 6 C -0.17 -4.94 8.75 25.64 0.22 -4.72 16 7 C 0.10 3.66 2.61 29.84 0.08 3.73 16 8 H 0.07 2.37 5.62 -2.38 -0.01 2.36 16 9 C -0.16 -5.18 9.25 71.98 0.67 -4.52 16 10 O -0.32 -15.58 9.14 -89.62 -0.82 -16.40 16 11 C 0.01 0.70 6.60 23.08 0.15 0.85 16 12 C -0.19 -8.36 8.38 22.34 0.19 -8.17 16 13 C -0.20 -8.68 10.04 22.43 0.23 -8.45 16 14 C -0.14 -6.69 9.97 22.00 0.22 -6.47 16 15 C -0.16 -8.70 8.60 22.47 0.19 -8.51 16 16 C 0.05 3.14 5.55 -21.20 -0.12 3.02 16 17 C -0.48 -28.19 8.68 23.40 0.20 -27.99 16 18 H 0.06 3.77 7.71 -2.91 -0.02 3.75 16 19 C 0.03 1.65 5.25 85.25 0.45 2.10 16 20 N -0.84 -46.22 10.88 21.83 0.24 -45.99 16 21 Si 0.98 41.12 29.57 68.60 2.03 43.15 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.11 2.63 7.83 -2.91 -0.02 2.61 16 35 H 0.11 3.32 7.84 -2.91 -0.02 3.30 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.05 1.67 7.39 -2.39 -0.02 1.66 16 39 H 0.13 4.79 5.70 -2.91 -0.02 4.78 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 42 H 0.11 6.11 6.27 -2.91 -0.02 6.09 16 43 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 Total: -1.00 -64.07 352.41 6.34 -57.73 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.96 Total: 30.37 kcal Atomic # 6 Polarization: -72.80 SS G_CDS: 3.94 Total: -68.87 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.24 Total: -45.99 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.82 Total: -16.40 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -64.07 6.34 -57.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.976 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds