Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 C 1.53001 * 109.47500 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47408 * 179.97438 * 4 3 2 6 6 C 1.31006 * 119.99979 * 124.99953 * 5 4 3 7 7 C 1.50693 * 119.99979 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47124 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47105 * 120.00359 * 7 6 5 10 10 O 1.42901 * 109.47300 * 239.99767 * 7 6 5 11 11 C 1.35639 * 116.99955 * 155.27425 * 10 7 6 12 12 C 1.38443 * 120.26671 * 5.35564 * 11 10 7 13 13 C 1.38310 * 120.05164 * 179.74985 * 12 11 10 14 14 C 1.38824 * 120.58797 * 0.55073 * 13 12 11 15 15 C 1.36483 * 120.53888 * 359.70862 * 14 13 12 16 16 C 1.40723 * 119.93365 * 0.02562 * 15 14 13 17 17 C 1.41153 * 120.29330 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99686 * 151.78811 * 17 16 15 19 19 C 1.39928 * 119.99865 * 331.78910 * 17 16 15 20 20 N 1.30866 * 120.00018 * 164.31912 * 19 17 16 21 21 Si 1.86806 * 120.00189 * 344.31520 * 19 17 16 22 22 H 1.48503 * 109.46870 * 95.30338 * 21 19 17 23 23 H 1.48496 * 109.47258 * 215.30448 * 21 19 17 24 24 H 1.48497 * 109.46867 * 335.30956 * 21 19 17 25 25 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46888 * 300.00291 * 1 2 3 27 27 H 1.09001 * 109.46512 * 60.00291 * 1 2 3 28 28 H 1.09001 * 109.47587 * 239.99517 * 2 1 3 29 29 H 1.09009 * 109.47126 * 119.99745 * 2 1 3 30 30 H 1.09003 * 109.47070 * 59.99821 * 3 2 1 31 31 H 1.08999 * 109.46920 * 299.99796 * 3 2 1 32 32 H 1.09001 * 109.47262 * 59.99518 * 4 3 2 33 33 H 1.08999 * 109.47009 * 300.00485 * 4 3 2 34 34 H 1.07993 * 120.00265 * 304.99813 * 5 4 3 35 35 H 1.08002 * 119.99889 * 359.97438 * 6 5 4 36 36 H 1.08999 * 109.47248 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.46687 * 299.99918 * 9 7 6 38 38 H 1.08999 * 109.47461 * 59.99489 * 9 7 6 39 39 H 1.07996 * 119.97625 * 0.02562 * 12 11 10 40 40 H 1.07995 * 119.70702 * 180.27930 * 13 12 11 41 41 H 1.08004 * 119.72766 * 179.72391 * 14 13 12 42 42 H 1.08008 * 120.03264 * 179.97438 * 15 14 13 43 43 H 0.97002 * 119.99720 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.9038 3.2645 0.9295 7 6 5.4066 4.6851 0.9285 8 1 4.9722 5.2237 0.0863 9 6 5.0013 5.3704 2.2351 10 8 6.8308 4.6863 0.8120 11 6 7.4049 5.7984 0.2890 12 6 6.6336 6.9105 -0.0026 13 6 7.2245 8.0440 -0.5309 14 6 8.5890 8.0764 -0.7846 15 6 9.3712 6.9919 -0.5113 16 6 8.7942 5.8289 0.0317 17 6 9.5962 4.7031 0.3178 18 1 9.3098 4.0225 1.1059 19 6 10.7621 4.4691 -0.4196 20 7 11.6589 3.6257 0.0244 21 14 11.0385 5.3603 -2.0379 22 1 11.8632 6.5723 -1.8009 23 1 11.7431 4.4595 -2.9851 24 1 9.7288 5.7578 -2.6140 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 3.7469 3.5508 -0.7666 35 1 5.2289 2.5771 1.6965 36 1 5.3654 6.3978 2.2346 37 1 3.9150 5.3695 2.3240 38 1 5.4353 4.8320 3.0776 39 1 5.5705 6.8946 0.1868 40 1 6.6183 8.9100 -0.7520 41 1 9.0351 8.9673 -1.2015 42 1 10.4318 7.0260 -0.7124 43 1 12.4669 3.4632 -0.4871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = -28.501528 kcal Electronic energy + Delta-G solvation = -20453.437704 eV Core-core repulsion = 17463.153928 eV Total energy + Delta-G solvation = -2990.283777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.14771 -37.04151 -36.24304 -33.96832 -33.54678 -31.31120 -30.30035 -28.76074 -28.34482 -25.03657 -24.31989 -22.55381 -21.32937 -20.93648 -20.21067 -19.38496 -17.44447 -17.00525 -15.83976 -15.46735 -14.88898 -14.61990 -14.09944 -14.04369 -13.90483 -13.70591 -13.49191 -13.15816 -12.61543 -12.50403 -12.35348 -12.00378 -11.90548 -11.73081 -11.64811 -11.41139 -11.20967 -11.07645 -10.83677 -10.74339 -10.68786 -10.54739 -10.36556 -9.92166 -9.64073 -9.58525 -9.12920 -8.92281 -7.68168 -7.12275 -6.87336 -4.31955 2.27553 2.59617 2.69956 3.14145 3.25968 3.36336 4.03067 4.25031 4.55214 4.69580 4.76698 4.91411 5.05783 5.14758 5.29758 5.39058 5.46461 5.47929 5.54609 5.59503 5.61578 5.73654 5.82952 5.85705 5.86961 5.94829 5.97707 6.06745 6.11201 6.19178 6.20730 6.30835 6.41544 6.60862 6.79634 6.84125 6.94355 7.03652 7.20031 7.54281 7.62185 7.83534 8.07152 8.29526 8.46375 8.84263 8.90747 10.15152 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003926 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.465582 B = 7130.826323 C = 7919.781151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.090 4.090 5 C -0.152 4.152 6 C -0.138 4.138 7 C 0.111 3.889 8 H 0.066 0.934 9 C -0.172 4.172 10 O -0.294 6.294 11 C 0.032 3.968 12 C -0.173 4.173 13 C -0.218 4.218 14 C -0.102 4.102 15 C -0.224 4.224 16 C 0.079 3.921 17 C -0.425 4.425 18 H 0.095 0.905 19 C 0.080 3.920 20 N -0.811 5.811 21 Si 0.912 3.088 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.243 1.243 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 -2.987 -0.501 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.127 4.127 5 C -0.170 4.170 6 C -0.156 4.156 7 C 0.054 3.946 8 H 0.084 0.916 9 C -0.229 4.229 10 O -0.209 6.209 11 C -0.013 4.013 12 C -0.192 4.192 13 C -0.237 4.237 14 C -0.121 4.121 15 C -0.243 4.243 16 C 0.075 3.925 17 C -0.454 4.454 18 H 0.113 0.887 19 C -0.138 4.138 20 N -0.435 5.435 21 Si 0.739 3.261 22 H -0.198 1.198 23 H -0.221 1.221 24 H -0.166 1.166 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.313 -3.352 -0.409 15.681 hybrid contribution 0.154 0.556 -0.709 0.914 sum -15.159 -2.796 -1.117 15.455 Atomic orbital electron populations 1.21779 0.96061 1.01414 1.01763 1.21561 0.95693 0.97105 1.02063 1.21584 0.95049 0.96529 1.02177 1.20703 0.95221 0.94171 1.02601 1.22805 0.99282 0.96998 0.97882 1.22688 0.97470 0.96101 0.99313 1.21150 0.82209 0.93685 0.97523 0.91639 1.22295 1.00834 1.01624 0.98196 1.86081 1.18513 1.37472 1.78845 1.19051 0.92169 0.86106 1.03939 1.20742 0.97873 0.94395 1.06152 1.20117 0.94605 0.97885 1.11106 1.20249 0.93938 0.97258 1.00644 1.20488 0.98243 0.93961 1.11621 1.17165 0.88667 0.93669 0.92976 1.19352 1.02726 1.07329 1.15971 0.88721 1.26167 0.93892 0.93985 0.99725 1.69695 1.06947 1.29575 1.37310 0.86316 0.80275 0.78218 0.81261 1.19827 1.22108 1.16611 0.92935 0.92806 0.92808 0.92022 0.92029 0.91948 0.91964 0.90922 0.91456 0.87441 0.86812 0.91616 0.92102 0.91749 0.88029 0.88875 0.88920 0.87900 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.03 5.93 -26.73 -0.16 -1.19 16 3 C -0.12 -1.06 5.20 -26.73 -0.14 -1.20 16 4 C -0.09 -0.98 5.66 -27.89 -0.16 -1.13 16 5 C -0.15 -1.99 9.12 -36.03 -0.33 -2.32 16 6 C -0.14 -2.10 8.75 -36.03 -0.32 -2.41 16 7 C 0.11 1.94 2.60 -27.89 -0.07 1.87 16 8 H 0.07 1.11 5.97 -51.93 -0.31 0.80 16 9 C -0.17 -2.61 9.15 37.16 0.34 -2.27 16 10 O -0.29 -6.74 9.12 -18.62 -0.17 -6.91 16 11 C 0.03 0.77 6.63 -38.33 -0.25 0.52 16 12 C -0.17 -3.73 8.24 -39.48 -0.33 -4.06 16 13 C -0.22 -4.64 10.04 -39.34 -0.39 -5.03 16 14 C -0.10 -2.29 9.97 -40.00 -0.40 -2.69 16 15 C -0.22 -5.57 6.98 -39.28 -0.27 -5.84 16 16 C 0.08 2.08 5.18 -106.68 -0.55 1.53 16 17 C -0.43 -12.01 9.23 -37.84 -0.35 -12.36 16 18 H 0.09 2.86 7.87 -52.49 -0.41 2.45 16 19 C 0.08 2.17 5.44 -17.33 -0.09 2.08 16 20 N -0.81 -22.22 13.93 55.55 0.77 -21.45 16 21 Si 0.91 21.43 24.40 -169.99 -4.15 17.28 16 22 H -0.27 -6.15 6.72 56.52 0.38 -5.77 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.24 -5.86 6.64 56.52 0.38 -5.48 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 34 H 0.11 1.36 7.83 -52.49 -0.41 0.95 16 35 H 0.11 1.69 7.84 -52.49 -0.41 1.28 16 36 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.90 5.43 -52.49 -0.29 1.62 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.10 2.53 4.31 -52.48 -0.23 2.31 16 43 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -28.78 345.75 -8.52 -37.30 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.08 Total: 3.80 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: -3.11 Total: -35.24 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 0.77 Total: -21.45 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.17 Total: -6.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.15 Total: 17.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.78 -8.52 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.799 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds