Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 C 1.53001 * 109.47500 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47408 * 179.97438 * 4 3 2 6 6 C 1.31006 * 119.99979 * 124.99953 * 5 4 3 7 7 C 1.50693 * 119.99979 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47124 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47105 * 120.00359 * 7 6 5 10 10 O 1.42901 * 109.47300 * 239.99767 * 7 6 5 11 11 C 1.35639 * 116.99955 * 155.27425 * 10 7 6 12 12 C 1.38443 * 120.26671 * 5.35564 * 11 10 7 13 13 C 1.38310 * 120.05164 * 179.74985 * 12 11 10 14 14 C 1.38824 * 120.58797 * 0.55073 * 13 12 11 15 15 C 1.36483 * 120.53888 * 359.70862 * 14 13 12 16 16 C 1.40723 * 119.93365 * 0.02562 * 15 14 13 17 17 C 1.41153 * 120.29330 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99686 * 151.78811 * 17 16 15 19 19 C 1.39928 * 119.99865 * 331.78910 * 17 16 15 20 20 N 1.30866 * 120.00018 * 164.31912 * 19 17 16 21 21 Si 1.86806 * 120.00189 * 344.31520 * 19 17 16 22 22 H 1.48503 * 109.46870 * 95.30338 * 21 19 17 23 23 H 1.48496 * 109.47258 * 215.30448 * 21 19 17 24 24 H 1.48497 * 109.46867 * 335.30956 * 21 19 17 25 25 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46888 * 300.00291 * 1 2 3 27 27 H 1.09001 * 109.46512 * 60.00291 * 1 2 3 28 28 H 1.09001 * 109.47587 * 239.99517 * 2 1 3 29 29 H 1.09009 * 109.47126 * 119.99745 * 2 1 3 30 30 H 1.09003 * 109.47070 * 59.99821 * 3 2 1 31 31 H 1.08999 * 109.46920 * 299.99796 * 3 2 1 32 32 H 1.09001 * 109.47262 * 59.99518 * 4 3 2 33 33 H 1.08999 * 109.47009 * 300.00485 * 4 3 2 34 34 H 1.07993 * 120.00265 * 304.99813 * 5 4 3 35 35 H 1.08002 * 119.99889 * 359.97438 * 6 5 4 36 36 H 1.08999 * 109.47248 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.46687 * 299.99918 * 9 7 6 38 38 H 1.08999 * 109.47461 * 59.99489 * 9 7 6 39 39 H 1.07996 * 119.97625 * 0.02562 * 12 11 10 40 40 H 1.07995 * 119.70702 * 180.27930 * 13 12 11 41 41 H 1.08004 * 119.72766 * 179.72391 * 14 13 12 42 42 H 1.08008 * 120.03264 * 179.97438 * 15 14 13 43 43 H 0.97002 * 119.99720 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.9038 3.2645 0.9295 7 6 5.4066 4.6851 0.9285 8 1 4.9722 5.2237 0.0863 9 6 5.0013 5.3704 2.2351 10 8 6.8308 4.6863 0.8120 11 6 7.4049 5.7984 0.2890 12 6 6.6336 6.9105 -0.0026 13 6 7.2245 8.0440 -0.5309 14 6 8.5890 8.0764 -0.7846 15 6 9.3712 6.9919 -0.5113 16 6 8.7942 5.8289 0.0317 17 6 9.5962 4.7031 0.3178 18 1 9.3098 4.0225 1.1059 19 6 10.7621 4.4691 -0.4196 20 7 11.6589 3.6257 0.0244 21 14 11.0385 5.3603 -2.0379 22 1 11.8632 6.5723 -1.8009 23 1 11.7431 4.4595 -2.9851 24 1 9.7288 5.7578 -2.6140 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 3.7469 3.5508 -0.7666 35 1 5.2289 2.5771 1.6965 36 1 5.3654 6.3978 2.2346 37 1 3.9150 5.3695 2.3240 38 1 5.4353 4.8320 3.0776 39 1 5.5705 6.8946 0.1868 40 1 6.6183 8.9100 -0.7520 41 1 9.0351 8.9673 -1.2015 42 1 10.4318 7.0260 -0.7124 43 1 12.4669 3.4632 -0.4871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = -42.540183 kcal Electronic energy + Delta-G solvation = -20454.046466 eV Core-core repulsion = 17463.153928 eV Total energy + Delta-G solvation = -2990.892538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83206 -38.54186 -37.34784 -35.49156 -35.04165 -32.66406 -31.94046 -30.53250 -29.30789 -26.94344 -25.32278 -24.01861 -22.71240 -22.05940 -21.65759 -20.60755 -19.34935 -18.70218 -17.29066 -16.73532 -16.27693 -16.05961 -15.84587 -15.48032 -15.22755 -14.93732 -14.62181 -14.33520 -14.16773 -13.86916 -13.71556 -13.44334 -13.29756 -13.11198 -12.77419 -12.69311 -12.52279 -12.27146 -12.20456 -12.05822 -11.93033 -11.73155 -11.51942 -11.46609 -11.43550 -11.30142 -10.94900 -10.07183 -9.55095 -8.92603 -8.85363 -6.36598 0.74862 0.85731 1.12548 1.24769 1.40846 1.48675 2.13054 2.62921 2.81656 3.49350 3.69686 3.93502 4.06707 4.12329 4.19899 4.21156 4.26403 4.33598 4.38943 4.50918 4.54680 4.62167 4.74028 4.79273 4.82694 4.84994 4.95476 4.98495 5.04828 5.06883 5.17190 5.20510 5.23855 5.30495 5.31332 5.40493 5.50086 5.68204 5.73941 5.75825 5.82184 5.98613 6.20179 6.36773 6.50011 6.81018 7.13459 8.24087 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003926 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.465582 B = 7130.826323 C = 7919.781151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.091 4.091 5 C -0.128 4.128 6 C -0.168 4.168 7 C 0.104 3.896 8 H 0.074 0.926 9 C -0.165 4.165 10 O -0.326 6.326 11 C 0.023 3.977 12 C -0.174 4.174 13 C -0.192 4.192 14 C -0.115 4.115 15 C -0.228 4.228 16 C 0.044 3.956 17 C -0.465 4.465 18 H 0.048 0.952 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.970 3.030 22 H -0.255 1.255 23 H -0.280 1.280 24 H -0.252 1.252 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -0.855 -2.094 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.128 4.128 5 C -0.146 4.146 6 C -0.186 4.186 7 C 0.048 3.952 8 H 0.091 0.909 9 C -0.222 4.222 10 O -0.242 6.242 11 C -0.021 4.021 12 C -0.192 4.192 13 C -0.211 4.211 14 C -0.133 4.133 15 C -0.248 4.248 16 C 0.041 3.959 17 C -0.495 4.495 18 H 0.066 0.934 19 C -0.173 4.173 20 N -0.485 5.485 21 Si 0.793 3.207 22 H -0.180 1.180 23 H -0.207 1.207 24 H -0.176 1.176 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.119 0.881 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.951 -1.215 -1.988 18.101 hybrid contribution 0.677 -0.004 -0.172 0.699 sum -17.274 -1.219 -2.161 17.451 Atomic orbital electron populations 1.21772 0.95229 1.01961 1.01983 1.21557 0.96422 0.96342 1.02120 1.21535 0.93361 0.97373 1.02476 1.20766 0.96678 0.92651 1.02744 1.23079 0.97164 0.98045 0.96288 1.22596 0.99577 0.95465 1.00997 1.21507 0.79422 0.95462 0.98835 0.90853 1.22247 1.02834 1.00502 0.96643 1.86065 1.21897 1.37534 1.78702 1.19310 0.91993 0.87432 1.03401 1.21141 0.99436 0.93524 1.05145 1.20743 0.94623 0.98583 1.07170 1.20680 0.94495 0.97614 1.00536 1.20670 0.98694 0.94256 1.11160 1.17419 0.89992 0.93800 0.94676 1.19189 1.04946 1.08444 1.16906 0.93412 1.26863 0.93307 0.94783 1.02325 1.69735 1.07941 1.31887 1.38973 0.85444 0.79824 0.77923 0.77470 1.18040 1.20743 1.17563 0.92288 0.92663 0.92513 0.91892 0.92136 0.91865 0.91410 0.90500 0.91609 0.86497 0.87388 0.92386 0.88797 0.92633 0.84768 0.84547 0.85285 0.88141 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.13 -1.84 5.93 30.59 0.18 -1.66 16 3 C -0.11 -1.79 5.20 30.59 0.16 -1.63 16 4 C -0.09 -1.87 5.66 29.85 0.17 -1.70 16 5 C -0.13 -3.19 9.12 25.64 0.23 -2.96 16 6 C -0.17 -5.10 8.75 25.64 0.22 -4.88 16 7 C 0.10 3.55 2.60 29.85 0.08 3.63 16 8 H 0.07 2.34 5.97 -2.39 -0.01 2.33 16 9 C -0.17 -4.79 9.15 71.98 0.66 -4.13 16 10 O -0.33 -15.42 9.12 -89.52 -0.82 -16.23 16 11 C 0.02 1.14 6.63 23.08 0.15 1.30 16 12 C -0.17 -7.00 8.24 22.34 0.18 -6.82 16 13 C -0.19 -7.28 10.04 22.43 0.23 -7.05 16 14 C -0.12 -4.73 9.97 22.00 0.22 -4.51 16 15 C -0.23 -11.15 6.98 22.47 0.16 -10.99 16 16 C 0.04 2.38 5.18 -21.20 -0.11 2.27 16 17 C -0.46 -28.04 9.23 23.40 0.22 -27.82 16 18 H 0.05 3.19 7.87 -2.91 -0.02 3.16 16 19 C 0.04 2.26 5.44 85.25 0.46 2.72 16 20 N -0.86 -49.75 13.93 21.83 0.30 -49.45 16 21 Si 0.97 44.87 24.40 68.60 1.67 46.54 16 22 H -0.25 -10.96 6.72 99.48 0.67 -10.29 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.25 -11.84 6.64 99.48 0.66 -11.18 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.37 7.79 -2.39 -0.02 1.35 16 34 H 0.12 2.70 7.83 -2.91 -0.02 2.67 16 35 H 0.11 3.34 7.84 -2.91 -0.02 3.32 16 36 H 0.06 1.75 6.90 -2.39 -0.02 1.73 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.13 4.48 5.43 -2.91 -0.02 4.46 16 40 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.10 4.87 4.31 -2.91 -0.01 4.86 16 43 H 0.29 15.16 8.30 -92.71 -0.77 14.39 16 Total: -1.00 -65.86 345.75 5.97 -59.89 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.88 Total: 24.67 kcal Atomic # 6 Polarization: -69.35 SS G_CDS: 3.93 Total: -65.43 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.30 Total: -49.45 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.82 Total: -16.23 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.54 kcal Total: -65.86 5.97 -59.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.351 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds