Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47130 * 184.73036 * 3 2 1 5 5 N 1.46501 * 109.47051 * 184.80989 * 4 3 2 6 6 C 1.36931 * 120.00053 * 94.44888 * 5 4 3 7 7 H 1.08000 * 119.99945 * 36.46278 * 6 5 4 8 8 C 1.38814 * 120.00242 * 216.17734 * 6 5 4 9 9 N 1.31614 * 119.99962 * 213.32026 * 8 6 5 10 10 Si 1.86798 * 119.99895 * 33.32077 * 8 6 5 11 11 H 1.48504 * 109.47304 * 86.14980 * 10 8 6 12 12 H 1.48495 * 109.47337 * 206.14880 * 10 8 6 13 13 H 1.48507 * 109.46974 * 326.15200 * 10 8 6 14 14 C 1.46499 * 119.99870 * 274.45423 * 5 4 3 15 15 C 1.50696 * 109.47313 * 275.41187 * 14 5 4 16 16 C 1.35969 * 126.69402 * 259.69386 * 15 14 5 17 17 N 1.33382 * 110.96648 * 179.81335 * 16 15 14 18 18 C 1.31977 * 110.80301 * 0.46120 * 17 16 15 19 19 N 1.36579 * 135.03256 * 179.72994 * 18 17 16 20 20 H 0.96999 * 120.59236 * 359.97438 * 19 18 17 21 21 C 1.34341 * 118.81247 * 179.97438 * 19 18 17 22 22 C 1.37686 * 121.24890 * 0.02562 * 21 19 18 23 23 N 1.32012 * 121.92083 * 359.97353 * 22 21 19 24 24 C 1.32180 * 120.28570 * 0.04724 * 23 22 21 25 25 H 1.09004 * 109.47088 * 59.99448 * 1 2 3 26 26 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47163 * 300.00144 * 1 2 3 28 28 H 1.09000 * 109.47163 * 239.99856 * 2 1 3 29 29 H 1.08996 * 109.47244 * 120.00277 * 2 1 3 30 30 H 1.09007 * 109.46692 * 64.73469 * 3 2 1 31 31 H 1.08991 * 109.47126 * 304.73638 * 3 2 1 32 32 H 1.08994 * 109.46823 * 64.81100 * 4 3 2 33 33 H 1.08998 * 109.47215 * 304.81256 * 4 3 2 34 34 H 0.97004 * 119.99854 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47483 * 35.41555 * 14 5 4 36 36 H 1.08998 * 109.47203 * 155.41265 * 14 5 4 37 37 H 1.07995 * 124.51936 * 359.97438 * 16 15 14 38 38 H 1.08000 * 119.37644 * 179.97438 * 21 19 18 39 39 H 1.07999 * 119.03684 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 -0.1190 5 7 4.0628 2.8172 -0.0037 6 6 4.4729 3.2971 1.2114 7 1 4.9860 2.6462 1.9038 8 6 4.2345 4.6218 1.5510 9 7 5.0957 5.2736 2.3032 10 14 2.6914 5.4793 0.9403 11 1 1.5719 5.2114 1.8785 12 1 2.9349 6.9422 0.8651 13 1 2.3407 4.9659 -0.4084 14 6 4.1212 3.6770 -1.1884 15 6 5.4052 3.4187 -1.9338 16 6 6.5349 4.1741 -1.8921 17 7 7.4851 3.6551 -2.6711 18 6 7.0548 2.5601 -3.2690 19 7 7.5933 1.6633 -4.1472 20 1 8.5027 1.7708 -4.4670 21 6 6.8410 0.6297 -4.5600 22 6 5.5485 0.4644 -4.1151 23 7 4.9892 1.3071 -3.2667 24 6 5.6675 2.3484 -2.8166 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7476 1.9312 0.9294 31 1 1.6091 1.9802 -0.8444 32 1 3.8548 1.0328 -1.0860 33 1 3.9926 0.8348 0.6775 34 1 4.9289 6.1992 2.5408 35 1 3.2736 3.4585 -1.8381 36 1 4.0835 4.7221 -0.8811 37 1 6.6487 5.0730 -1.3045 38 1 7.2576 -0.0846 -5.2547 39 1 4.9756 -0.3793 -4.4706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232547539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = 119.700819 kcal Electronic energy + Delta-G solvation = -21308.031604 eV Core-core repulsion = 18252.926771 eV Total energy + Delta-G solvation = -3055.104833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.49906 -38.24484 -36.31329 -35.24803 -33.94777 -31.56008 -29.89047 -29.57284 -27.84550 -25.19548 -24.73550 -23.88694 -22.63310 -21.00621 -20.56194 -19.74292 -17.97331 -17.28350 -16.44590 -16.06510 -15.33012 -14.96221 -14.70962 -14.58681 -14.02990 -13.56822 -13.50126 -12.91055 -12.85483 -12.50344 -12.11828 -12.08223 -11.93878 -11.84061 -11.65796 -11.07605 -10.74098 -10.53014 -10.39593 -10.32687 -10.09372 -9.93974 -9.63431 -9.35860 -8.67626 -8.33733 -7.93283 -7.33870 -6.69132 -5.97523 -3.19741 0.26596 1.53352 2.37802 3.46386 3.57678 3.63237 3.81131 3.89905 4.13379 4.50007 4.56857 4.65413 4.80115 5.22061 5.32552 5.46084 5.47259 5.64622 5.66139 5.72923 6.06487 6.10493 6.22036 6.23226 6.34184 6.38946 6.45491 6.50548 6.58317 6.69785 6.75142 6.86589 6.99247 7.06169 7.11901 7.26581 7.47357 8.05420 8.13484 8.33974 8.50531 9.12833 9.83813 10.30376 11.18244 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.007835 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.422871 B = 3572.753676 C = 5203.125525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.139 4.139 4 C 0.147 3.853 5 N -0.590 5.590 6 C -0.265 4.265 7 H 0.072 0.928 8 C 0.044 3.956 9 N -0.881 5.881 10 Si 0.845 3.155 11 H -0.290 1.290 12 H -0.296 1.296 13 H -0.258 1.258 14 C 0.215 3.785 15 C -0.171 4.171 16 C 0.092 3.908 17 N -0.521 5.521 18 C 0.196 3.804 19 N -0.472 5.472 20 H 0.421 0.579 21 C 0.067 3.933 22 C -0.015 4.015 23 N -0.374 5.374 24 C 0.095 3.905 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -10.855 -14.970 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.179 4.179 4 C 0.021 3.979 5 N -0.310 5.310 6 C -0.393 4.393 7 H 0.090 0.910 8 C -0.158 4.158 9 N -0.520 5.520 10 Si 0.672 3.328 11 H -0.217 1.217 12 H -0.223 1.223 13 H -0.183 1.183 14 C 0.089 3.911 15 C -0.178 4.178 16 C -0.056 4.056 17 N -0.242 5.242 18 C -0.064 4.064 19 N -0.068 5.068 20 H 0.259 0.741 21 C -0.075 4.075 22 C -0.172 4.172 23 N -0.085 5.085 24 C -0.058 4.058 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.187 0.813 38 H 0.196 0.804 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.840 -10.429 -14.668 18.017 hybrid contribution -0.293 0.317 -0.465 0.634 sum 0.548 -10.112 -15.133 18.209 Atomic orbital electron populations 1.21770 0.96879 1.00489 1.01530 1.21474 0.94900 0.98294 1.01177 1.22200 0.99462 0.94666 1.01560 1.20969 0.90831 0.86804 0.99301 1.44118 1.72707 1.10442 1.03691 1.18707 1.31356 0.95662 0.93602 0.91031 1.25413 0.97322 0.96538 0.96483 1.70076 1.32712 1.09973 1.39243 0.87484 0.87381 0.77983 0.79902 1.21735 1.22302 1.18297 1.19670 0.89481 0.95160 0.86762 1.21244 1.01882 0.94901 0.99768 1.22493 0.88196 0.99446 0.95449 1.69621 1.32675 1.08107 1.13771 1.21419 0.94059 0.94504 0.96383 1.40272 1.15676 1.18430 1.32422 0.74092 1.23119 0.94412 0.90343 0.99671 1.22297 0.92152 1.02024 1.00725 1.67076 1.36340 1.00326 1.04777 1.21349 0.89274 0.95343 0.99858 0.93167 0.93619 0.93023 0.92620 0.92573 0.92129 0.93263 0.93103 0.93771 0.92801 0.93957 0.91647 0.81334 0.80426 0.81132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.15 0.37 -1.66 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.14 -2.68 5.54 -26.73 -0.15 -2.83 16 4 C 0.15 3.16 5.69 -4.04 -0.02 3.13 16 5 N -0.59 -14.57 2.06 -174.62 -0.36 -14.93 16 6 C -0.26 -7.51 9.78 -15.06 -0.15 -7.66 16 7 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 8 C 0.04 1.27 5.02 -17.43 -0.09 1.18 16 9 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 10 Si 0.85 21.67 26.48 -169.99 -4.50 17.17 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.26 -6.30 5.54 56.52 0.31 -5.99 16 14 C 0.22 5.04 4.40 -5.20 -0.02 5.01 16 15 C -0.17 -3.75 5.79 -104.32 -0.60 -4.35 16 16 C 0.09 1.98 11.63 -17.69 -0.21 1.77 16 17 N -0.52 -10.41 11.17 -11.04 -0.12 -10.53 16 18 C 0.20 3.37 8.65 -154.28 -1.33 2.04 16 19 N -0.47 -5.10 5.35 -10.45 -0.06 -5.16 16 20 H 0.42 3.02 8.94 -40.82 -0.36 2.66 16 21 C 0.07 0.54 11.18 -16.66 -0.19 0.35 16 22 C -0.02 -0.17 11.08 -17.68 -0.20 -0.37 16 23 N -0.37 -6.29 9.36 -9.76 -0.09 -6.38 16 24 C 0.09 1.83 7.36 -82.85 -0.61 1.22 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.05 6.77 -51.93 -0.35 0.70 16 33 H 0.04 0.97 8.00 -51.93 -0.42 0.55 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.07 1.61 4.39 -51.93 -0.23 1.38 16 37 H 0.17 3.60 8.06 -52.49 -0.42 3.18 16 38 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -35.25 323.83 -8.49 -43.73 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.66 Total: 1.30 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.35 Total: -4.17 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.15 Total: -62.91 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.50 Total: 17.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.25 -8.49 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232547539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.432 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds