Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47130 * 184.73036 * 3 2 1 5 5 N 1.46501 * 109.47051 * 184.80989 * 4 3 2 6 6 C 1.36931 * 120.00053 * 94.44888 * 5 4 3 7 7 H 1.08000 * 119.99945 * 36.46278 * 6 5 4 8 8 C 1.38814 * 120.00242 * 216.17734 * 6 5 4 9 9 N 1.31614 * 119.99962 * 213.32026 * 8 6 5 10 10 Si 1.86798 * 119.99895 * 33.32077 * 8 6 5 11 11 H 1.48504 * 109.47304 * 86.14980 * 10 8 6 12 12 H 1.48495 * 109.47337 * 206.14880 * 10 8 6 13 13 H 1.48507 * 109.46974 * 326.15200 * 10 8 6 14 14 C 1.46499 * 119.99870 * 274.45423 * 5 4 3 15 15 C 1.50696 * 109.47313 * 275.41187 * 14 5 4 16 16 C 1.35969 * 126.69402 * 259.69386 * 15 14 5 17 17 N 1.33382 * 110.96648 * 179.81335 * 16 15 14 18 18 C 1.31977 * 110.80301 * 0.46120 * 17 16 15 19 19 N 1.36579 * 135.03256 * 179.72994 * 18 17 16 20 20 H 0.96999 * 120.59236 * 359.97438 * 19 18 17 21 21 C 1.34341 * 118.81247 * 179.97438 * 19 18 17 22 22 C 1.37686 * 121.24890 * 0.02562 * 21 19 18 23 23 N 1.32012 * 121.92083 * 359.97353 * 22 21 19 24 24 C 1.32180 * 120.28570 * 0.04724 * 23 22 21 25 25 H 1.09004 * 109.47088 * 59.99448 * 1 2 3 26 26 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47163 * 300.00144 * 1 2 3 28 28 H 1.09000 * 109.47163 * 239.99856 * 2 1 3 29 29 H 1.08996 * 109.47244 * 120.00277 * 2 1 3 30 30 H 1.09007 * 109.46692 * 64.73469 * 3 2 1 31 31 H 1.08991 * 109.47126 * 304.73638 * 3 2 1 32 32 H 1.08994 * 109.46823 * 64.81100 * 4 3 2 33 33 H 1.08998 * 109.47215 * 304.81256 * 4 3 2 34 34 H 0.97004 * 119.99854 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47483 * 35.41555 * 14 5 4 36 36 H 1.08998 * 109.47203 * 155.41265 * 14 5 4 37 37 H 1.07995 * 124.51936 * 359.97438 * 16 15 14 38 38 H 1.08000 * 119.37644 * 179.97438 * 21 19 18 39 39 H 1.07999 * 119.03684 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 -0.1190 5 7 4.0628 2.8172 -0.0037 6 6 4.4729 3.2971 1.2114 7 1 4.9860 2.6462 1.9038 8 6 4.2345 4.6218 1.5510 9 7 5.0957 5.2736 2.3032 10 14 2.6914 5.4793 0.9403 11 1 1.5719 5.2114 1.8785 12 1 2.9349 6.9422 0.8651 13 1 2.3407 4.9659 -0.4084 14 6 4.1212 3.6770 -1.1884 15 6 5.4052 3.4187 -1.9338 16 6 6.5349 4.1741 -1.8921 17 7 7.4851 3.6551 -2.6711 18 6 7.0548 2.5601 -3.2690 19 7 7.5933 1.6633 -4.1472 20 1 8.5027 1.7708 -4.4670 21 6 6.8410 0.6297 -4.5600 22 6 5.5485 0.4644 -4.1151 23 7 4.9892 1.3071 -3.2667 24 6 5.6675 2.3484 -2.8166 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7476 1.9312 0.9294 31 1 1.6091 1.9802 -0.8444 32 1 3.8548 1.0328 -1.0860 33 1 3.9926 0.8348 0.6775 34 1 4.9289 6.1992 2.5408 35 1 3.2736 3.4585 -1.8381 36 1 4.0835 4.7221 -0.8811 37 1 6.6487 5.0730 -1.3045 38 1 7.2576 -0.0846 -5.2547 39 1 4.9756 -0.3793 -4.4706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232547539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = 94.334785 kcal Electronic energy + Delta-G solvation = -21309.131557 eV Core-core repulsion = 18252.926771 eV Total energy + Delta-G solvation = -3056.204787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.67950 -39.50427 -38.03153 -36.41260 -35.49175 -33.64065 -31.38796 -30.64982 -29.44456 -26.91019 -25.97361 -25.55664 -23.81920 -22.56330 -21.88855 -21.33011 -19.13529 -19.05729 -17.74234 -17.68243 -16.78826 -16.51682 -16.16819 -15.79242 -15.62163 -15.05706 -14.74518 -14.63168 -14.31607 -14.22258 -13.68022 -13.52302 -13.36028 -13.17985 -13.04571 -12.75461 -12.67290 -12.17062 -12.02280 -11.83702 -11.72197 -11.44901 -11.32346 -11.21706 -10.53372 -9.96302 -9.04831 -8.82720 -8.66818 -8.21076 -5.42162 -0.81965 0.47084 1.36878 1.37446 1.43315 1.53437 2.32378 2.49172 2.71223 3.05973 3.20226 3.33549 3.57440 3.62614 4.08745 4.18243 4.29267 4.29586 4.42328 4.45823 4.61555 4.65572 4.85423 4.89798 4.94296 5.04813 5.09308 5.12646 5.14735 5.21561 5.38025 5.44027 5.52333 5.63004 5.64917 5.83688 5.97370 6.06931 6.21311 6.93443 7.00454 7.06118 7.72780 8.19918 8.99316 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.007835 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.422871 B = 3572.753676 C = 5203.125525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.130 4.130 4 C 0.150 3.850 5 N -0.601 5.601 6 C -0.260 4.260 7 H 0.029 0.971 8 C -0.002 4.002 9 N -0.930 5.930 10 Si 0.909 3.091 11 H -0.292 1.292 12 H -0.297 1.297 13 H -0.242 1.242 14 C 0.224 3.776 15 C -0.194 4.194 16 C 0.048 3.952 17 N -0.546 5.546 18 C 0.173 3.827 19 N -0.441 5.441 20 H 0.445 0.555 21 C 0.148 3.852 22 C -0.022 4.022 23 N -0.384 5.384 24 C 0.027 3.973 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.142 0.858 38 H 0.268 0.732 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 -15.375 -19.858 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.170 4.170 4 C 0.025 3.975 5 N -0.322 5.322 6 C -0.389 4.389 7 H 0.047 0.953 8 C -0.200 4.200 9 N -0.572 5.572 10 Si 0.736 3.264 11 H -0.219 1.219 12 H -0.224 1.224 13 H -0.166 1.166 14 C 0.098 3.902 15 C -0.201 4.201 16 C -0.101 4.101 17 N -0.267 5.267 18 C -0.082 4.082 19 N -0.038 5.038 20 H 0.288 0.712 21 C 0.000 4.000 22 C -0.184 4.184 23 N -0.097 5.097 24 C -0.118 4.118 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.159 0.841 38 H 0.283 0.717 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.622 -14.869 -19.544 24.565 hybrid contribution -0.026 1.151 0.558 1.280 sum 0.595 -13.718 -18.985 23.430 Atomic orbital electron populations 1.21741 0.95081 1.02122 1.01406 1.21415 0.96418 0.95292 1.02008 1.22065 0.97561 0.97364 1.00014 1.21010 0.92301 0.84928 0.99249 1.44158 1.73626 1.11525 1.02870 1.18493 1.30439 0.95257 0.94725 0.95317 1.25868 0.99442 0.97299 0.97424 1.70168 1.34439 1.10406 1.42220 0.86457 0.83234 0.76724 0.80033 1.21913 1.22401 1.16599 1.19426 0.90993 0.93462 0.86302 1.20898 1.00452 0.97109 1.01674 1.22111 0.89708 1.00170 0.98068 1.69425 1.32370 1.09958 1.14925 1.21227 0.93845 0.95073 0.98078 1.40674 1.16970 1.16859 1.29266 0.71239 1.24724 0.92557 0.87604 0.95128 1.23484 0.94044 1.01895 0.98941 1.66973 1.37641 0.99938 1.05111 1.20759 0.90958 0.97105 1.03011 0.92771 0.91077 0.93757 0.91012 0.92484 0.94738 0.93442 0.91870 0.95229 0.92887 0.93533 0.94134 0.84064 0.71671 0.76164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.11 -3.31 5.93 30.59 0.18 -3.13 16 3 C -0.13 -5.05 5.54 30.60 0.17 -4.88 16 4 C 0.15 6.65 5.69 86.38 0.49 7.14 16 5 N -0.60 -31.49 2.06 -706.36 -1.45 -32.95 16 6 C -0.26 -15.91 9.78 84.03 0.82 -15.09 16 7 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 8 C 0.00 -0.14 5.02 84.86 0.43 0.29 16 9 N -0.93 -60.68 13.97 21.65 0.30 -60.38 16 10 Si 0.91 47.96 26.48 68.60 1.82 49.77 16 11 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 12 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 13 H -0.24 -12.00 5.54 99.48 0.55 -11.45 16 14 C 0.22 11.14 4.40 85.63 0.38 11.51 16 15 C -0.19 -9.11 5.79 -19.67 -0.11 -9.22 16 16 C 0.05 2.29 11.63 83.93 0.98 3.27 16 17 N -0.55 -22.96 11.17 -188.84 -2.11 -25.07 16 18 C 0.17 5.74 8.65 136.21 1.18 6.92 16 19 N -0.44 -6.94 5.35 -186.98 -1.00 -7.94 16 20 H 0.45 3.47 8.94 -92.71 -0.83 2.64 16 21 C 0.15 1.01 11.18 84.18 0.94 1.95 16 22 C -0.02 -0.33 11.08 84.54 0.94 0.60 16 23 N -0.38 -11.69 9.36 -184.80 -1.73 -13.42 16 24 C 0.03 1.04 7.36 42.24 0.31 1.35 16 25 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.62 6.77 -2.39 -0.02 2.60 16 33 H 0.03 1.36 8.00 -2.39 -0.02 1.34 16 34 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 35 H 0.05 2.19 8.10 -2.38 -0.02 2.17 16 36 H 0.04 2.15 4.39 -2.39 -0.01 2.14 16 37 H 0.14 7.07 8.06 -2.91 -0.02 7.05 16 38 H 0.27 -2.49 8.06 -2.91 -0.02 -2.51 16 39 H 0.22 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -91.88 323.83 3.30 -88.58 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.07 Total: 3.61 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 7.41 Total: -2.21 kcal Atomic # 7 Polarization: -133.76 SS G_CDS: -5.99 Total: -139.75 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.82 Total: 49.77 kcal Total: -91.88 3.30 -88.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232547539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.910 kcal (2) G-P(sol) polarization free energy of solvation -91.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds