Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47268 * 2 1 4 4 N 1.46905 * 109.46919 * 179.42313 * 3 2 1 5 5 C 1.46894 * 111.00368 * 297.21269 * 4 3 2 6 6 C 1.50707 * 109.46987 * 288.63598 * 5 4 3 7 7 H 1.07994 * 119.99970 * 1.20235 * 6 5 4 8 8 C 1.37875 * 119.99526 * 181.20546 * 6 5 4 9 9 N 1.31515 * 119.99786 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00397 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47222 * 90.00433 * 10 8 6 12 12 H 1.48503 * 109.47095 * 210.00110 * 10 8 6 13 13 H 1.48498 * 109.47018 * 330.00190 * 10 8 6 14 14 C 1.46902 * 111.00194 * 61.17246 * 4 3 2 15 15 C 1.50701 * 109.47276 * 66.04132 * 14 4 3 16 16 N 1.32509 * 125.17970 * 269.96086 * 15 14 4 17 17 C 1.32842 * 109.67682 * 180.02562 * 16 15 14 18 18 C 1.40659 * 132.89086 * 180.02562 * 17 16 15 19 19 C 1.36181 * 119.26917 * 179.97438 * 18 17 16 20 20 C 1.40278 * 119.62422 * 0.02562 * 19 18 17 21 21 C 1.35189 * 120.20895 * 0.02562 * 20 19 18 22 22 N 1.35928 * 120.56930 * 359.97438 * 21 20 19 23 23 N 1.31249 * 125.17941 * 90.00503 * 15 14 4 24 24 H 1.09001 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47031 * 300.00258 * 1 2 3 26 26 H 1.09003 * 109.47083 * 59.99979 * 1 2 3 27 27 H 1.09011 * 109.47071 * 240.00203 * 2 1 3 28 28 H 1.09004 * 109.47233 * 120.00555 * 2 1 3 29 29 H 1.08997 * 109.47017 * 59.42383 * 3 2 1 30 30 H 1.09002 * 109.47372 * 299.41987 * 3 2 1 31 31 H 1.09004 * 109.47115 * 48.63185 * 5 4 3 32 32 H 1.08997 * 109.47354 * 168.63669 * 5 4 3 33 33 H 0.97001 * 120.00613 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46710 * 306.04094 * 14 4 3 35 35 H 1.08995 * 109.46898 * 186.04339 * 14 4 3 36 36 H 1.08002 * 120.36414 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.19144 * 180.29474 * 19 18 17 38 38 H 1.07997 * 119.89504 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.71532 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0139 5 6 4.0238 0.8193 1.2405 6 6 3.7689 1.7318 2.4126 7 1 3.2566 2.6709 2.2644 8 6 4.1898 1.3676 3.6740 9 7 3.9669 2.1635 4.6969 10 14 5.0753 -0.2571 3.9304 11 1 6.5378 -0.0542 3.7717 12 1 4.7915 -0.7653 5.2966 13 1 4.6005 -1.2433 2.9269 14 6 4.0468 0.7771 -1.1803 15 6 3.6998 1.5846 -2.4044 16 7 2.6014 1.4366 -3.1306 17 6 2.6094 2.3048 -4.1360 18 6 1.7055 2.5677 -5.1811 19 6 1.9964 3.5460 -6.0827 20 6 3.1891 4.2735 -5.9559 21 6 4.0455 4.0049 -4.9448 22 7 3.7633 3.0303 -4.0404 23 7 4.4401 2.5411 -2.9141 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6682 1.9592 0.8848 30 1 1.6852 1.9533 -0.8951 31 1 3.5184 -0.1324 1.4044 32 1 5.0956 0.6489 1.1392 33 1 4.2632 1.9076 5.5844 34 1 3.6132 -0.2192 -1.2673 35 1 5.1302 0.6956 -1.0938 36 1 0.7905 2.0005 -5.2671 37 1 1.3108 3.7636 -6.8883 38 1 3.4244 5.0500 -6.6686 39 1 4.9612 4.5702 -4.8545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233068591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = 128.807047 kcal Electronic energy + Delta-G solvation = -20892.955817 eV Core-core repulsion = 17838.245860 eV Total energy + Delta-G solvation = -3054.709957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61071 -38.36641 -37.16631 -33.59234 -32.72110 -32.29372 -31.00320 -29.84197 -28.30150 -26.61752 -24.30547 -23.69955 -22.91647 -21.95585 -20.89001 -19.10292 -17.94717 -17.06058 -16.72352 -16.21581 -15.99061 -15.12613 -14.92088 -14.69054 -14.25149 -13.82635 -13.44829 -12.94763 -12.82786 -12.77807 -12.47693 -12.09682 -11.82294 -11.42302 -11.36925 -11.26088 -11.19842 -11.05675 -10.78637 -10.54552 -10.41801 -9.95936 -9.90319 -9.76477 -9.40215 -9.26416 -8.51938 -8.31962 -7.31463 -6.00533 -3.97128 0.54150 0.91222 2.13410 2.72924 3.31354 3.32412 3.39095 3.40282 3.89390 4.09474 4.45543 4.50386 4.61481 4.81844 4.96532 5.11863 5.20030 5.32029 5.55842 5.57836 5.61936 5.78152 5.83338 5.86407 5.88563 6.13942 6.16589 6.35643 6.37769 6.42202 6.48285 6.55759 6.60893 6.74433 6.88882 6.99438 7.09397 7.61881 7.89421 8.00224 8.12941 8.69379 9.09259 9.60749 11.12810 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.004441 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.458488 B = 6303.594683 C = 6828.591365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.160 4.160 3 C 0.066 3.934 4 N -0.518 5.518 5 C 0.160 3.840 6 C -0.503 4.503 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.133 3.867 15 C 0.287 3.713 16 N -0.536 5.536 17 C 0.274 3.726 18 C -0.106 4.106 19 C -0.067 4.067 20 C -0.170 4.170 21 C 0.121 3.879 22 N -0.293 5.293 23 N -0.322 5.322 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.001 0.999 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 0.679 -22.810 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C -0.063 4.063 4 N -0.242 5.242 5 C 0.034 3.966 6 C -0.541 4.541 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.002 3.998 15 C 0.007 3.993 16 N -0.265 5.265 17 C 0.020 3.980 18 C -0.127 4.127 19 C -0.093 4.093 20 C -0.193 4.193 21 C -0.008 4.008 22 N -0.068 5.068 23 N -0.153 5.153 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.019 0.981 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.277 1.053 -22.052 22.320 hybrid contribution 0.198 -1.398 0.069 1.414 sum -3.079 -0.345 -21.984 22.201 Atomic orbital electron populations 1.21600 0.96161 1.00617 1.01378 1.22117 0.96112 0.99966 1.01688 1.22107 0.87139 0.94996 1.02016 1.62163 1.07515 1.53745 1.00767 1.20277 0.94678 0.94318 0.87332 1.20972 1.37645 1.05871 0.89644 0.90226 1.24867 0.95789 0.96690 0.95916 1.69891 1.47481 1.36951 0.99714 0.86900 0.80600 0.84882 0.77634 1.20159 1.21242 1.19170 1.20500 1.01029 0.93258 0.84998 1.24469 0.87324 0.91910 0.95639 1.70832 1.23560 1.25531 1.06620 1.21875 0.88628 0.91060 0.96444 1.20290 0.99482 1.00440 0.92496 1.21182 0.96466 0.93519 0.98102 1.20882 0.95293 1.03622 0.99493 1.21547 1.01225 0.89897 0.88085 1.47872 1.15734 1.24078 1.19104 1.78658 1.20003 1.18059 0.98548 0.93654 0.92805 0.93214 0.92389 0.91369 0.89815 0.92245 0.98110 0.95822 0.92717 0.91881 0.88821 0.82897 0.83570 0.82563 0.81435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.16 -2.92 5.29 -26.74 -0.14 -3.06 16 3 C 0.07 1.35 5.02 -3.82 -0.02 1.34 16 4 N -0.52 -11.46 4.65 -237.52 -1.10 -12.56 16 5 C 0.16 3.90 3.66 -4.98 -0.02 3.88 16 6 C -0.50 -14.48 9.12 -34.44 -0.31 -14.80 16 7 H 0.08 2.53 7.68 -52.49 -0.40 2.13 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 10 Si 0.87 21.59 27.44 -169.99 -4.67 16.92 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.31 6.58 56.52 0.37 -5.94 16 14 C 0.13 2.53 5.36 -4.97 -0.03 2.50 16 15 C 0.29 5.37 6.72 -157.04 -1.06 4.32 16 16 N -0.54 -9.42 10.46 -10.15 -0.11 -9.53 16 17 C 0.27 4.07 7.88 -156.33 -1.23 2.84 16 18 C -0.11 -1.06 10.11 -39.41 -0.40 -1.46 16 19 C -0.07 -0.46 10.07 -39.56 -0.40 -0.85 16 20 C -0.17 -1.14 9.99 -39.90 -0.40 -1.54 16 21 C 0.12 1.20 11.20 -16.82 -0.19 1.01 16 22 N -0.29 -4.37 3.90 -12.34 -0.05 -4.42 16 23 N -0.32 -5.96 12.78 32.38 0.41 -5.55 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.02 6.33 -51.92 -0.33 0.69 16 28 H 0.07 1.35 6.22 -51.93 -0.32 1.03 16 29 H 0.08 1.91 7.15 -51.93 -0.37 1.54 16 30 H 0.06 1.21 6.65 -51.93 -0.35 0.87 16 31 H 0.00 0.03 5.02 -51.93 -0.26 -0.23 16 32 H 0.02 0.58 7.19 -51.93 -0.37 0.20 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 1.12 6.05 -51.93 -0.31 0.81 16 35 H 0.09 1.70 7.87 -51.93 -0.41 1.29 16 36 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -34.67 318.90 -9.10 -43.78 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.25 Total: -0.58 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -3.92 Total: -5.73 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.07 Total: -59.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.67 -9.10 -43.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233068591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.583 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds