Wall clock time and date at job start Mon Mar 30 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47268 * 2 1 4 4 N 1.46905 * 109.46919 * 179.42313 * 3 2 1 5 5 C 1.46894 * 111.00368 * 297.21269 * 4 3 2 6 6 C 1.50707 * 109.46987 * 288.63598 * 5 4 3 7 7 H 1.07994 * 119.99970 * 1.20235 * 6 5 4 8 8 C 1.37875 * 119.99526 * 181.20546 * 6 5 4 9 9 N 1.31515 * 119.99786 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00397 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47222 * 90.00433 * 10 8 6 12 12 H 1.48503 * 109.47095 * 210.00110 * 10 8 6 13 13 H 1.48498 * 109.47018 * 330.00190 * 10 8 6 14 14 C 1.46902 * 111.00194 * 61.17246 * 4 3 2 15 15 C 1.50701 * 109.47276 * 66.04132 * 14 4 3 16 16 N 1.32509 * 125.17970 * 269.96086 * 15 14 4 17 17 C 1.32842 * 109.67682 * 180.02562 * 16 15 14 18 18 C 1.40659 * 132.89086 * 180.02562 * 17 16 15 19 19 C 1.36181 * 119.26917 * 179.97438 * 18 17 16 20 20 C 1.40278 * 119.62422 * 0.02562 * 19 18 17 21 21 C 1.35189 * 120.20895 * 0.02562 * 20 19 18 22 22 N 1.35928 * 120.56930 * 359.97438 * 21 20 19 23 23 N 1.31249 * 125.17941 * 90.00503 * 15 14 4 24 24 H 1.09001 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47031 * 300.00258 * 1 2 3 26 26 H 1.09003 * 109.47083 * 59.99979 * 1 2 3 27 27 H 1.09011 * 109.47071 * 240.00203 * 2 1 3 28 28 H 1.09004 * 109.47233 * 120.00555 * 2 1 3 29 29 H 1.08997 * 109.47017 * 59.42383 * 3 2 1 30 30 H 1.09002 * 109.47372 * 299.41987 * 3 2 1 31 31 H 1.09004 * 109.47115 * 48.63185 * 5 4 3 32 32 H 1.08997 * 109.47354 * 168.63669 * 5 4 3 33 33 H 0.97001 * 120.00613 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46710 * 306.04094 * 14 4 3 35 35 H 1.08995 * 109.46898 * 186.04339 * 14 4 3 36 36 H 1.08002 * 120.36414 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.19144 * 180.29474 * 19 18 17 38 38 H 1.07997 * 119.89504 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.71532 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0139 5 6 4.0238 0.8193 1.2405 6 6 3.7689 1.7318 2.4126 7 1 3.2566 2.6709 2.2644 8 6 4.1898 1.3676 3.6740 9 7 3.9669 2.1635 4.6969 10 14 5.0753 -0.2571 3.9304 11 1 6.5378 -0.0542 3.7717 12 1 4.7915 -0.7653 5.2966 13 1 4.6005 -1.2433 2.9269 14 6 4.0468 0.7771 -1.1803 15 6 3.6998 1.5846 -2.4044 16 7 2.6014 1.4366 -3.1306 17 6 2.6094 2.3048 -4.1360 18 6 1.7055 2.5677 -5.1811 19 6 1.9964 3.5460 -6.0827 20 6 3.1891 4.2735 -5.9559 21 6 4.0455 4.0049 -4.9448 22 7 3.7633 3.0303 -4.0404 23 7 4.4401 2.5411 -2.9141 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6682 1.9592 0.8848 30 1 1.6852 1.9533 -0.8951 31 1 3.5184 -0.1324 1.4044 32 1 5.0956 0.6489 1.1392 33 1 4.2632 1.9076 5.5844 34 1 3.6132 -0.2192 -1.2673 35 1 5.1302 0.6956 -1.0938 36 1 0.7905 2.0005 -5.2671 37 1 1.3108 3.7636 -6.8883 38 1 3.4244 5.0500 -6.6686 39 1 4.9612 4.5702 -4.8545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233068591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:26 Heat of formation + Delta-G solvation = 104.765500 kcal Electronic energy + Delta-G solvation = -20893.998337 eV Core-core repulsion = 17838.245860 eV Total energy + Delta-G solvation = -3055.752477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.65250 -39.63822 -38.43999 -34.84313 -34.49939 -33.78176 -32.27413 -30.79924 -30.04664 -28.14589 -25.93485 -24.57315 -23.91791 -23.64069 -22.28629 -20.70388 -18.93214 -18.86821 -17.91163 -17.43920 -16.84798 -16.60813 -16.43647 -16.04919 -15.64142 -15.41997 -14.99879 -14.53173 -14.23843 -13.79923 -13.57620 -13.41072 -13.23578 -12.92241 -12.76196 -12.67503 -12.40611 -12.35976 -12.25055 -12.18885 -12.10484 -11.86954 -11.49799 -11.36802 -11.12208 -10.75654 -10.44564 -9.24492 -9.01548 -8.26747 -6.29856 -0.20680 0.00751 1.20056 1.36285 1.37800 1.48562 1.58976 2.35858 2.46616 2.87634 3.06341 3.09801 3.34884 3.81542 3.86501 4.04154 4.08616 4.13624 4.26105 4.34373 4.46019 4.48106 4.57587 4.65752 4.76996 4.92926 4.97282 4.99082 5.07316 5.15093 5.20314 5.27262 5.31814 5.33962 5.43656 5.49695 5.54263 5.86402 5.94444 6.26269 6.58959 6.74358 6.96425 7.32507 8.90417 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.004441 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.458488 B = 6303.594683 C = 6828.591365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 C 0.077 3.923 4 N -0.540 5.540 5 C 0.172 3.828 6 C -0.512 4.512 7 H 0.029 0.971 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.947 3.053 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.246 1.246 14 C 0.140 3.860 15 C 0.269 3.731 16 N -0.568 5.568 17 C 0.253 3.747 18 C -0.126 4.126 19 C -0.038 4.038 20 C -0.135 4.135 21 C 0.081 3.919 22 N -0.299 5.299 23 N -0.367 5.367 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.009 0.991 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.170 0.830 37 H 0.198 0.802 38 H 0.208 0.792 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 0.109 -26.464 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.189 4.189 3 C -0.051 4.051 4 N -0.263 5.263 5 C 0.045 3.955 6 C -0.550 4.550 7 H 0.048 0.952 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.770 3.230 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.169 1.169 14 C 0.009 3.991 15 C -0.012 4.012 16 N -0.299 5.299 17 C 0.001 3.999 18 C -0.148 4.148 19 C -0.063 4.063 20 C -0.157 4.157 21 C -0.045 4.045 22 N -0.073 5.073 23 N -0.199 5.199 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.188 0.812 37 H 0.215 0.785 38 H 0.224 0.776 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.765 0.503 -25.762 26.041 hybrid contribution 0.252 -0.934 0.914 1.331 sum -3.513 -0.431 -24.849 25.099 Atomic orbital electron populations 1.21558 0.94040 1.02132 1.01444 1.22001 0.97967 0.97739 1.01208 1.21918 0.86603 0.96449 1.00169 1.61966 1.08375 1.54793 1.01201 1.20018 0.95069 0.93462 0.86930 1.21155 1.37117 1.04875 0.91857 0.95228 1.25825 0.96614 1.01089 0.95271 1.70055 1.49064 1.39518 1.00432 0.85719 0.79409 0.79758 0.78130 1.19030 1.20675 1.16922 1.20396 1.00985 0.93678 0.84008 1.24190 0.88364 0.92652 0.95975 1.70689 1.23673 1.27512 1.08031 1.22530 0.89481 0.90830 0.97035 1.20738 0.99600 1.02264 0.92160 1.21863 0.96518 0.90596 0.97332 1.21623 0.93566 1.02732 0.97795 1.22341 1.03494 0.90032 0.88677 1.47914 1.15569 1.24972 1.18879 1.78438 1.21702 1.19010 1.00743 0.91365 0.93603 0.92301 0.91374 0.93010 0.93337 0.92176 0.97320 0.95180 0.92434 0.90800 0.88632 0.81218 0.78511 0.77565 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.91 71.98 0.71 -3.40 16 2 C -0.15 -5.54 5.29 30.59 0.16 -5.38 16 3 C 0.08 3.33 5.02 86.30 0.43 3.76 16 4 N -0.54 -24.91 4.65 -905.36 -4.21 -29.12 16 5 C 0.17 8.60 3.66 85.56 0.31 8.91 16 6 C -0.51 -30.92 9.12 25.60 0.23 -30.69 16 7 H 0.03 2.02 7.68 -2.91 -0.02 2.00 16 8 C 0.01 0.54 5.47 84.65 0.46 1.00 16 9 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 10 Si 0.95 44.88 27.44 68.60 1.88 46.77 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.25 -10.74 6.58 99.48 0.65 -10.08 16 14 C 0.14 5.47 5.36 85.56 0.46 5.93 16 15 C 0.27 10.45 6.72 138.70 0.93 11.38 16 16 N -0.57 -20.37 10.46 -186.04 -1.95 -22.32 16 17 C 0.25 7.39 7.88 134.10 1.06 8.45 16 18 C -0.13 -2.19 10.11 22.38 0.23 -1.96 16 19 C -0.04 -0.31 10.07 22.29 0.22 -0.09 16 20 C -0.14 -1.13 9.99 22.06 0.22 -0.91 16 21 C 0.08 1.45 11.20 83.36 0.93 2.38 16 22 N -0.30 -8.87 3.90 -192.96 -0.75 -9.63 16 23 N -0.37 -14.09 12.78 -51.47 -0.66 -14.74 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.38 6.33 -2.38 -0.02 2.36 16 28 H 0.05 2.07 6.22 -2.39 -0.01 2.05 16 29 H 0.05 2.39 7.15 -2.39 -0.02 2.38 16 30 H 0.06 2.58 6.65 -2.39 -0.02 2.56 16 31 H 0.01 0.45 5.02 -2.39 -0.01 0.43 16 32 H 0.03 1.47 7.19 -2.39 -0.02 1.45 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.07 2.67 6.05 -2.39 -0.01 2.65 16 35 H 0.10 3.59 7.87 -2.39 -0.02 3.57 16 36 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.20 -0.24 8.06 -2.91 -0.02 -0.27 16 38 H 0.21 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -82.58 318.90 1.98 -80.59 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.00 Total: 9.83 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.37 Total: -0.62 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -7.27 Total: -136.57 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -82.58 1.98 -80.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233068591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.360 kcal (2) G-P(sol) polarization free energy of solvation -82.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds