Wall clock time and date at job start Mon Mar 30 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47567 * 270.00044 * 3 2 1 5 5 H 1.48497 * 109.47128 * 30.00347 * 3 2 1 6 6 H 1.48499 * 109.47240 * 150.00023 * 3 2 1 7 7 C 1.37876 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00181 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47413 * 174.00289 * 9 7 2 11 11 C 1.46898 * 111.00377 * 178.63766 * 10 9 7 12 12 C 1.50700 * 109.47376 * 199.97853 * 11 10 9 13 13 C 1.38306 * 119.96257 * 263.90146 * 12 11 10 14 14 C 1.38258 * 120.15189 * 180.27866 * 13 12 11 15 15 C 1.38129 * 120.07436 * 359.97438 * 14 13 12 16 16 C 1.38892 * 119.91926 * 0.02562 * 15 14 13 17 17 N 1.39681 * 120.06998 * 179.97438 * 16 15 14 18 18 C 1.38077 * 119.96168 * 84.17650 * 12 11 10 19 19 C 1.46903 * 110.99680 * 302.59239 * 10 9 7 20 20 C 1.54267 * 110.02958 * 93.94248 * 19 10 9 21 21 C 1.54971 * 104.15618 * 217.13302 * 20 19 10 22 22 C 1.54887 * 102.77758 * 37.88686 * 21 20 19 23 23 C 1.53867 * 110.03497 * 336.72156 * 19 10 9 24 24 H 0.97008 * 120.00252 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47053 * 54.00969 * 9 7 2 26 26 H 1.09000 * 109.47523 * 294.00570 * 9 7 2 27 27 H 1.09000 * 109.47050 * 79.97511 * 11 10 9 28 28 H 1.09005 * 109.46665 * 319.98093 * 11 10 9 29 29 H 1.08008 * 119.92360 * 0.26064 * 13 12 11 30 30 H 1.07997 * 119.96574 * 180.02562 * 14 13 12 31 31 H 1.07992 * 120.03578 * 180.02562 * 15 14 13 32 32 H 0.96996 * 119.99731 * 180.02562 * 17 16 15 33 33 H 0.97001 * 119.99724 * 0.02562 * 17 16 15 34 34 H 1.08006 * 120.03690 * 359.70161 * 18 12 11 35 35 H 1.09005 * 110.01371 * 215.32834 * 19 10 9 36 36 H 1.08995 * 110.48869 * 335.77778 * 20 19 10 37 37 H 1.08999 * 110.48705 * 98.42626 * 20 19 10 38 38 H 1.08995 * 110.72037 * 279.57108 * 21 20 19 39 39 H 1.09004 * 110.92251 * 156.29421 * 21 20 19 40 40 H 1.09003 * 110.48908 * 203.40450 * 22 21 20 41 41 H 1.08998 * 110.59986 * 80.81746 * 22 21 20 42 42 H 1.08998 * 110.03416 * 238.57013 * 23 19 10 43 43 H 1.08997 * 110.03287 * 359.95128 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.1989 -3.6119 -0.1459 11 6 1.5017 -4.9046 -0.1176 12 6 2.4824 -5.9970 0.2230 13 6 3.0722 -6.7353 -0.7870 14 6 3.9681 -7.7422 -0.4787 15 6 4.2775 -8.0138 0.8398 16 6 3.6870 -7.2742 1.8564 17 7 3.9971 -7.5466 3.1908 18 6 2.7868 -6.2635 1.5431 19 6 2.9940 -3.4693 -1.3729 20 6 4.3229 -2.7507 -1.0609 21 6 4.5686 -1.8534 -2.3003 22 6 3.1431 -1.3639 -2.6568 23 6 2.2442 -2.5883 -2.3874 24 1 -0.4851 0.8401 -0.0004 25 1 0.5459 -2.5116 -0.8318 26 1 0.7076 -2.6050 0.9384 27 1 1.0629 -5.1022 -1.0955 28 1 0.7138 -4.8760 0.6352 29 1 2.8321 -6.5249 -1.8188 30 1 4.4272 -8.3165 -1.2698 31 1 4.9777 -8.8001 1.0798 32 1 3.5839 -7.0297 3.9000 33 1 4.6258 -8.2525 3.4083 34 1 2.3262 -5.6863 2.3313 35 1 3.1924 -4.4502 -1.8050 36 1 4.2254 -2.1415 -0.1624 37 1 5.1301 -3.4742 -0.9467 38 1 4.9936 -2.4343 -3.1188 39 1 5.2146 -1.0119 -2.0497 40 1 3.0902 -1.0754 -3.7067 41 1 2.8530 -0.5298 -2.0180 42 1 2.0794 -3.1412 -3.3122 43 1 1.2900 -2.2672 -1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237221040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:25 Heat of formation + Delta-G solvation = 24.604369 kcal Electronic energy + Delta-G solvation = -21957.911472 eV Core-core repulsion = 19002.223292 eV Total energy + Delta-G solvation = -2955.688181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74691 -39.71825 -36.21253 -35.15065 -34.46061 -32.17234 -29.85699 -29.35674 -28.82132 -28.22202 -25.65492 -23.76046 -23.08598 -21.90592 -21.30300 -19.72094 -18.53098 -17.66301 -17.39520 -16.94003 -16.77573 -16.68340 -16.15880 -15.30945 -15.06453 -14.78045 -14.58569 -14.35964 -13.89629 -13.86075 -13.72446 -13.22588 -12.92019 -12.75196 -12.71421 -12.35114 -12.23172 -12.03399 -11.86292 -11.67550 -11.58164 -11.53451 -11.34665 -11.19340 -10.85867 -10.60116 -10.38537 -9.56366 -8.79148 -8.30044 -8.08705 -6.09106 0.63108 0.83975 1.40616 1.42788 1.51409 2.45340 3.01016 3.13531 3.26114 3.53127 3.98478 4.01620 4.03753 4.18358 4.33655 4.41642 4.45357 4.63381 4.65646 4.75125 4.82210 4.87281 4.88604 5.00463 5.04443 5.11971 5.17524 5.22251 5.25265 5.27596 5.34479 5.39797 5.52479 5.57607 5.73951 5.77703 5.90679 5.94631 5.97158 6.12581 6.23203 6.49265 6.71332 6.80166 7.05923 7.10558 7.54843 9.03359 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.005384 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.666220 B = 5199.253485 C = 5640.635086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.009 3.991 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.201 3.799 10 N -0.529 5.529 11 C 0.089 3.911 12 C -0.026 4.026 13 C -0.186 4.186 14 C -0.072 4.072 15 C -0.209 4.209 16 C 0.209 3.791 17 N -0.872 5.872 18 C -0.195 4.195 19 C 0.099 3.901 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.155 4.155 24 H 0.258 0.742 25 H -0.014 1.014 26 H -0.009 1.009 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.402 0.598 33 H 0.407 0.593 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.644 -14.441 -0.507 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.529 4.529 8 H 0.102 0.898 9 C 0.076 3.924 10 N -0.252 5.252 11 C -0.039 4.039 12 C -0.027 4.027 13 C -0.206 4.206 14 C -0.090 4.090 15 C -0.232 4.232 16 C 0.104 3.896 17 N -0.412 5.412 18 C -0.218 4.218 19 C -0.009 4.009 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.193 4.193 24 H 0.066 0.934 25 H 0.004 0.996 26 H 0.009 0.991 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.230 0.770 33 H 0.237 0.763 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.806 -14.308 -0.120 17.346 hybrid contribution -0.873 1.226 -0.106 1.509 sum 8.933 -13.082 -0.226 15.843 Atomic orbital electron populations 1.70078 1.07459 1.27024 1.53415 1.25591 0.95229 1.01885 0.96041 0.85875 0.79047 0.80341 0.78438 1.19716 1.21789 1.18942 1.21716 0.94543 0.89875 1.46779 0.89820 1.19633 0.90576 0.89041 0.93193 1.62305 1.25411 1.00709 1.36764 1.21037 0.94403 0.89066 0.99407 1.19511 0.95853 0.94043 0.93333 1.20894 1.01858 0.99528 0.98344 1.21079 0.95589 0.95930 0.96452 1.20797 1.06018 1.04269 0.92107 1.17858 0.92690 0.92836 0.86192 1.42404 1.52661 1.42914 1.03202 1.20433 1.03924 1.01137 0.96350 1.22136 0.93471 0.97280 0.88050 1.22509 0.95591 0.97936 0.98446 1.22424 0.96163 0.98840 0.97713 1.22347 0.95278 0.98497 0.99478 1.22823 1.01654 0.97050 0.97793 0.93352 0.99626 0.99078 0.94708 0.92053 0.86572 0.83885 0.84218 0.76954 0.76331 0.87491 0.90994 0.91855 0.92145 0.90503 0.92019 0.92817 0.92202 0.93358 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.59 13.29 21.45 0.28 -55.30 16 2 C 0.01 0.52 5.14 84.66 0.43 0.95 16 3 Si 0.94 43.78 28.51 68.60 1.96 45.74 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.49 -26.15 5.23 25.60 0.13 -26.01 16 8 H 0.08 4.36 3.92 -2.91 -0.01 4.35 16 9 C 0.20 10.40 4.16 85.55 0.36 10.75 16 10 N -0.53 -22.67 4.36 -875.81 -3.82 -26.49 16 11 C 0.09 3.34 5.02 85.56 0.43 3.77 16 12 C -0.03 -0.85 5.13 -19.89 -0.10 -0.95 16 13 C -0.19 -5.24 8.59 22.29 0.19 -5.05 16 14 C -0.07 -1.68 10.04 22.25 0.22 -1.46 16 15 C -0.21 -4.70 9.90 22.40 0.22 -4.48 16 16 C 0.21 5.27 6.75 38.21 0.26 5.53 16 17 N -0.87 -15.84 9.09 -51.37 -0.47 -16.31 16 18 C -0.20 -6.04 9.57 22.40 0.21 -5.83 16 19 C 0.10 3.83 2.72 45.64 0.12 3.96 16 20 C -0.11 -3.97 5.89 31.70 0.19 -3.79 16 21 C -0.11 -3.80 6.90 31.91 0.22 -3.58 16 22 C -0.12 -4.64 6.17 31.67 0.20 -4.44 16 23 C -0.16 -6.35 5.63 31.32 0.18 -6.17 16 24 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 25 H -0.01 -0.75 5.83 -2.38 -0.01 -0.77 16 26 H -0.01 -0.50 8.04 -2.39 -0.02 -0.52 16 27 H 0.03 1.28 7.90 -2.39 -0.02 1.26 16 28 H 0.06 2.39 7.84 -2.38 -0.02 2.37 16 29 H 0.12 3.11 7.46 -2.91 -0.02 3.09 16 30 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.40 6.67 8.84 -92.71 -0.82 5.85 16 33 H 0.41 5.20 8.84 -92.71 -0.82 4.38 16 34 H 0.11 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.07 2.54 5.76 -2.38 -0.01 2.53 16 36 H 0.06 2.73 5.39 -2.39 -0.01 2.72 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 2.72 4.70 -2.39 -0.01 2.71 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 3.55 3.99 -2.39 -0.01 3.54 16 Total: -1.00 -62.32 325.09 0.61 -61.71 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.61 Total: 27.45 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.26 Total: -36.79 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -4.00 Total: -98.11 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.96 Total: 45.74 kcal Total: -62.32 0.61 -61.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237221040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.313 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds