Wall clock time and date at job start Mon Mar 30 2020 01:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35518 * 117.00038 * 2 1 4 4 C 1.39142 * 120.46960 * 359.97438 * 3 2 1 5 5 C 1.38259 * 118.65649 * 180.02562 * 4 3 2 6 6 C 1.40275 * 119.56375 * 359.97438 * 5 4 3 7 7 C 1.47630 * 119.54197 * 179.97438 * 6 5 4 8 8 C 1.31679 * 117.88108 * 174.22229 * 7 6 5 9 9 C 1.50216 * 122.67097 * 175.59685 * 8 7 6 10 10 C 1.53279 * 110.42381 * 50.41944 * 9 8 7 11 11 N 1.46554 * 107.89785 * 267.26677 * 10 9 8 12 12 C 1.47033 * 111.23690 * 32.92962 * 11 10 9 13 13 C 1.50128 * 117.87808 * 353.95623 * 7 6 5 14 14 N 1.32347 * 120.92012 * 359.74237 * 6 5 4 15 15 C 1.33544 * 121.44133 * 0.52056 * 14 6 5 16 16 C 1.40986 * 119.82499 * 179.75193 * 15 14 6 17 17 H 1.08002 * 120.00448 * 179.73095 * 16 15 14 18 18 C 1.40020 * 119.99939 * 359.45649 * 16 15 14 19 19 N 1.30774 * 119.99989 * 0.27604 * 18 16 15 20 20 Si 1.86796 * 120.00236 * 180.27124 * 18 16 15 21 21 H 1.48505 * 109.46907 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47258 * 119.99870 * 20 18 16 23 23 H 1.48493 * 109.47397 * 240.00381 * 20 18 16 24 24 H 1.08998 * 109.47305 * 300.00475 * 1 2 3 25 25 H 1.09000 * 109.46515 * 60.00229 * 1 2 3 26 26 H 1.08998 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.66939 * 0.04313 * 4 3 2 28 28 H 1.08003 * 120.21688 * 179.97438 * 5 4 3 29 29 H 1.07998 * 118.66453 * 355.60991 * 8 7 6 30 30 H 1.09008 * 109.31158 * 170.71645 * 9 8 7 31 31 H 1.09003 * 109.31303 * 290.31781 * 9 8 7 32 32 H 1.08996 * 109.77450 * 26.86663 * 10 9 8 33 33 H 1.09001 * 109.77433 * 147.66416 * 10 9 8 34 34 H 1.00900 * 110.99982 * 268.80625 * 11 10 9 35 35 H 1.09000 * 109.69496 * 180.02562 * 12 11 10 36 36 H 1.08995 * 109.69807 * 300.59775 * 12 11 10 37 37 H 1.09010 * 109.17714 * 330.26966 * 13 7 6 38 38 H 1.08996 * 109.18065 * 89.49156 * 13 7 6 39 39 H 0.96997 * 120.00583 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.2961 2.3806 -0.0005 5 6 1.9624 3.5920 -0.0011 6 6 3.3650 3.6104 -0.0005 7 6 4.0761 4.9042 -0.0016 8 6 5.3875 4.8862 0.1161 9 6 6.2263 6.1294 0.0313 10 6 5.6736 7.2123 0.9648 11 7 4.7513 8.0470 0.1900 12 6 4.0542 7.2587 -0.8369 13 6 3.2577 6.1548 -0.1431 14 7 4.0599 2.4840 0.0056 15 6 3.4560 1.2929 0.0011 16 6 4.2298 0.1144 0.0027 17 1 3.7444 -0.8504 0.0034 18 6 5.6277 0.1947 -0.0027 19 7 6.2155 1.3629 -0.0035 20 14 6.6530 -1.3667 -0.0083 21 1 5.7543 -2.5490 -0.0068 22 1 7.5051 -1.3950 -1.2242 23 1 7.5144 -1.3977 1.2008 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2167 2.3455 -0.0003 28 1 1.4066 4.5181 -0.0019 29 1 5.8800 3.9392 0.2801 30 1 7.2508 5.8934 0.3196 31 1 6.2169 6.5015 -0.9932 32 1 5.1416 6.7473 1.7947 33 1 6.4919 7.8231 1.3463 34 1 5.2332 8.8319 -0.2221 35 1 3.3765 7.9027 -1.3973 36 1 4.7820 6.8126 -1.5146 37 1 2.3649 5.9342 -0.7283 38 1 2.9595 6.5014 0.8463 39 1 7.1839 1.4186 -0.0076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238941143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:12 Heat of formation + Delta-G solvation = 22.275358 kcal Electronic energy + Delta-G solvation = -21249.667112 eV Core-core repulsion = 18158.044843 eV Total energy + Delta-G solvation = -3091.622269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.20757 -38.46018 -36.62909 -33.91592 -32.75129 -31.32578 -30.29581 -29.22173 -26.71336 -25.99024 -25.39073 -24.22375 -21.47154 -21.00735 -19.73892 -17.82952 -17.47029 -16.63122 -16.49626 -15.73036 -15.10169 -14.75845 -14.72966 -14.35531 -13.32417 -13.18060 -12.96920 -12.72393 -12.50243 -12.37051 -12.28208 -12.03831 -11.59762 -11.40475 -11.24435 -11.17449 -10.99673 -10.66710 -10.47918 -10.41821 -10.36746 -9.96069 -9.63347 -9.43792 -8.47574 -8.19045 -8.04264 -7.69162 -6.78422 -6.42382 -4.37782 2.24930 2.84315 3.11639 3.14397 3.17326 3.58073 3.97899 4.42616 4.44222 4.81060 5.17554 5.23445 5.45461 5.54421 5.59392 5.67251 5.72206 5.73693 5.90782 5.91881 5.97522 6.00882 6.05471 6.14624 6.22100 6.36259 6.41189 6.50294 6.56599 6.77064 6.95815 7.14364 7.19656 7.40406 7.50724 7.54209 7.66651 7.79953 8.04357 8.23572 8.33681 8.73082 9.03276 10.05122 10.31607 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.006648 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.951287 B = 4210.891801 C = 5902.313330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C -0.034 4.034 4 C -0.147 4.147 5 C -0.276 4.276 6 C 0.150 3.850 7 C -0.078 4.078 8 C -0.138 4.138 9 C -0.125 4.125 10 C 0.060 3.940 11 N -0.692 5.692 12 C 0.052 3.948 13 C -0.074 4.074 14 N -0.454 5.454 15 C 0.254 3.746 16 C -0.415 4.415 17 H 0.090 0.910 18 C 0.068 3.932 19 N -0.718 5.718 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.274 1.274 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.148 0.852 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.333 0.667 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 7.092 -0.623 7.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.223 6.223 3 C -0.082 4.082 4 C -0.171 4.171 5 C -0.299 4.299 6 C 0.009 3.991 7 C -0.079 4.079 8 C -0.157 4.157 9 C -0.164 4.164 10 C -0.069 4.069 11 N -0.322 5.322 12 C -0.076 4.076 13 C -0.112 4.112 14 N -0.169 5.169 15 C 0.126 3.874 16 C -0.447 4.447 17 H 0.108 0.892 18 C -0.156 4.156 19 N -0.341 5.341 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.166 0.834 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.861 6.927 -0.155 6.982 hybrid contribution -0.175 -0.670 -0.673 0.965 sum -1.036 6.258 -0.828 6.397 Atomic orbital electron populations 1.22743 0.81797 1.01804 0.99891 1.85931 1.18243 1.27960 1.90153 1.20352 0.93695 0.83170 1.11026 1.20873 0.97639 0.92772 1.05850 1.21094 0.94495 0.96068 1.18287 1.19974 0.89546 0.92720 0.96880 1.19669 0.93714 0.91782 1.02724 1.23049 0.94492 0.99248 0.98929 1.21287 0.99549 0.95555 0.99963 1.22154 0.94299 0.93586 0.96831 1.60611 1.32654 1.11219 1.27718 1.22131 0.97142 0.94993 0.93365 1.20340 0.97830 0.91677 1.01356 1.68942 1.34700 0.95298 1.17915 1.18149 0.84975 0.92197 0.92085 1.19541 0.90580 0.93029 1.41508 0.89199 1.26037 0.98676 0.97205 0.93689 1.70097 1.10178 1.24478 1.29325 0.86255 0.79784 0.82297 0.78421 1.18350 1.19939 1.19903 0.94228 0.94250 0.89924 0.88048 0.88271 0.83423 0.91675 0.91188 0.90548 0.91800 0.85101 0.91118 0.93610 0.90864 0.90542 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.83 101.05 0.99 1.57 16 2 O -0.31 -7.21 9.60 -18.25 -0.18 -7.38 16 3 C -0.03 -0.87 6.74 -38.03 -0.26 -1.12 16 4 C -0.15 -3.39 9.11 -39.24 -0.36 -3.75 16 5 C -0.28 -6.33 9.25 -38.81 -0.36 -6.69 16 6 C 0.15 3.67 6.68 -83.05 -0.56 3.12 16 7 C -0.08 -1.61 5.54 -102.94 -0.57 -2.18 16 8 C -0.14 -2.76 8.86 -36.42 -0.32 -3.08 16 9 C -0.13 -1.93 5.44 -27.97 -0.15 -2.08 16 10 C 0.06 0.83 6.44 -3.87 -0.02 0.80 16 11 N -0.69 -8.94 6.79 -113.91 -0.77 -9.72 16 12 C 0.05 0.74 6.23 -3.86 -0.02 0.71 16 13 C -0.07 -1.25 4.62 -28.27 -0.13 -1.38 16 14 N -0.45 -12.39 6.54 -7.67 -0.05 -12.44 16 15 C 0.25 7.08 6.56 -84.87 -0.56 6.53 16 16 C -0.41 -11.34 8.94 -37.87 -0.34 -11.67 16 17 H 0.09 2.40 7.31 -52.49 -0.38 2.02 16 18 C 0.07 1.74 5.50 -17.33 -0.10 1.64 16 19 N -0.72 -18.63 10.88 55.55 0.60 -18.03 16 20 Si 0.91 18.85 29.56 -169.99 -5.02 13.82 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 25 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 2.01 6.43 -52.49 -0.34 1.67 16 28 H 0.10 2.00 6.31 -52.48 -0.33 1.67 16 29 H 0.15 3.48 6.50 -52.49 -0.34 3.14 16 30 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.07 1.04 5.84 -51.93 -0.30 0.74 16 32 H 0.08 1.19 7.66 -51.93 -0.40 0.80 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.33 3.50 8.90 -39.29 -0.35 3.15 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.68 5.32 -51.93 -0.28 0.40 16 37 H 0.07 1.22 6.43 -51.92 -0.33 0.88 16 38 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 39 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -29.57 309.31 -8.60 -38.17 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.09 Total: 8.50 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.75 Total: -17.60 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.22 Total: -40.18 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.57 -8.60 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238941143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.449 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds