Wall clock time and date at job start Mon Mar 30 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47168 * 239.99777 * 3 2 1 5 5 H 1.48506 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47278 * 119.99818 * 3 2 1 7 7 C 1.37870 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00474 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99833 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46851 * 174.54202 * 9 7 2 11 11 C 1.46898 * 110.99756 * 161.86954 * 10 9 7 12 12 C 1.50705 * 109.47137 * 199.84332 * 11 10 9 13 13 C 1.38228 * 120.00556 * 85.51495 * 12 11 10 14 14 C 1.38234 * 120.00404 * 180.02562 * 13 12 11 15 15 C 1.38227 * 119.99810 * 0.25478 * 14 13 12 16 16 C 1.38237 * 120.00195 * 359.46240 * 15 14 13 17 17 C 1.38234 * 119.99777 * 0.53759 * 16 15 14 18 18 C 1.46895 * 111.00631 * 285.82137 * 10 9 7 19 19 H 1.09000 * 109.50765 * 185.97950 * 18 10 9 20 20 C 1.53119 * 109.50142 * 306.05960 * 18 10 9 21 21 C 1.53121 * 109.16108 * 177.59049 * 20 18 10 22 22 C 1.53036 * 109.27908 * 302.34436 * 21 20 18 23 23 N 1.46853 * 109.52130 * 59.17975 * 22 21 20 24 24 C 1.46851 * 111.23137 * 298.27577 * 23 22 21 25 25 H 0.97000 * 120.00395 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46899 * 54.54855 * 9 7 2 27 27 H 1.08991 * 109.47194 * 294.54585 * 9 7 2 28 28 H 1.08997 * 109.47381 * 79.84246 * 11 10 9 29 29 H 1.09010 * 109.47397 * 319.83728 * 11 10 9 30 30 H 1.08005 * 119.99656 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.00137 * 179.97438 * 14 13 12 32 32 H 1.07999 * 120.00262 * 179.72809 * 15 14 13 33 33 H 1.08000 * 120.00592 * 180.29934 * 16 15 14 34 34 H 1.08001 * 120.00560 * 179.76328 * 17 16 15 35 35 H 1.08992 * 109.52437 * 297.49451 * 20 18 10 36 36 H 1.09000 * 109.52311 * 57.69097 * 20 18 10 37 37 H 1.09000 * 109.50544 * 62.28382 * 21 20 18 38 38 H 1.08998 * 109.50812 * 182.36536 * 21 20 18 39 39 H 1.08999 * 109.46373 * 179.19307 * 22 21 20 40 40 H 1.08999 * 109.46528 * 299.17365 * 22 21 20 41 41 H 1.00897 * 110.99950 * 62.35950 * 23 22 21 42 42 H 1.09001 * 109.42860 * 301.68798 * 24 23 22 43 43 H 1.08999 * 109.49306 * 181.72101 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2003 -3.6125 -0.1306 11 6 1.5865 -4.8796 0.2884 12 6 2.6674 -5.8796 0.6092 13 6 3.2356 -5.9030 1.8691 14 6 4.2275 -6.8198 2.1631 15 6 4.6549 -7.7097 1.1956 16 6 4.0827 -7.6903 -0.0627 17 6 3.0908 -6.7734 -0.3567 18 6 2.7160 -3.7059 -1.5028 19 1 3.3329 -4.5993 -1.5998 20 6 1.5441 -3.7847 -2.4851 21 6 2.0890 -3.8211 -3.9157 22 6 2.9481 -2.5786 -4.1609 23 7 4.0554 -2.5496 -3.1968 24 6 3.5578 -2.4672 -1.8176 25 1 -0.4851 0.8400 -0.0004 26 1 0.5535 -2.5159 -0.8369 27 1 0.6993 -2.6001 0.9351 28 1 0.9625 -5.2652 -0.5178 29 1 0.9732 -4.7111 1.1737 30 1 2.9052 -5.2044 2.6235 31 1 4.6717 -6.8378 3.1473 32 1 5.4329 -8.4231 1.4239 33 1 4.4132 -8.3888 -0.8172 34 1 2.6463 -6.7556 -1.3408 35 1 0.9672 -4.6890 -2.2921 36 1 0.9052 -2.9104 -2.3609 37 1 2.6964 -4.7159 -4.0511 38 1 1.2583 -3.8348 -4.6213 39 1 3.3493 -2.6085 -5.1739 40 1 2.3368 -1.6844 -4.0386 41 1 4.6593 -3.3491 -3.3156 42 1 2.9442 -1.5732 -1.7064 43 1 4.4012 -2.4166 -1.1290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246522355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:32 Heat of formation + Delta-G solvation = 34.571191 kcal Electronic energy + Delta-G solvation = -22093.846042 eV Core-core repulsion = 19138.590055 eV Total energy + Delta-G solvation = -2955.255987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.51635 -38.44020 -35.53184 -32.83012 -31.36732 -30.91232 -30.66457 -28.73323 -27.26665 -24.53367 -23.44441 -22.49607 -21.99279 -21.27487 -20.54425 -18.83871 -16.66955 -16.26754 -15.55690 -15.08429 -15.04081 -14.92460 -14.42147 -14.11919 -13.91943 -13.38867 -13.26166 -13.16394 -12.55880 -12.33063 -12.22347 -12.01311 -11.63446 -11.34695 -11.09804 -11.05362 -11.00200 -10.74449 -10.66352 -10.52081 -10.47229 -10.18566 -10.00624 -9.41542 -9.14500 -8.68525 -8.49023 -8.38993 -7.81604 -7.18291 -6.04619 -4.02165 1.59846 1.63865 3.35410 3.38733 3.43340 4.00123 4.42959 4.78850 5.02390 5.08594 5.14201 5.19828 5.26384 5.29178 5.34369 5.47816 5.55299 5.68109 5.72185 5.76716 5.88339 5.98088 6.01972 6.06193 6.18763 6.25517 6.29528 6.30528 6.40869 6.56004 6.67486 6.68448 6.71244 6.78311 6.94916 7.16186 7.24527 7.33100 7.41249 7.60311 7.80705 7.97763 8.10323 8.19228 8.51596 9.01867 9.57809 11.04994 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.006365 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.180105 B = 4398.092047 C = 5294.323169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.183 3.817 10 N -0.521 5.521 11 C 0.084 3.916 12 C -0.057 4.057 13 C -0.098 4.098 14 C -0.123 4.123 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.117 4.117 18 C 0.070 3.930 19 H 0.057 0.943 20 C -0.158 4.158 21 C -0.147 4.147 22 C 0.058 3.942 23 N -0.686 5.686 24 C 0.044 3.956 25 H 0.261 0.739 26 H 0.009 0.991 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.323 0.677 42 H 0.132 0.868 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -12.544 -2.712 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.091 0.909 9 C 0.059 3.941 10 N -0.244 5.244 11 C -0.044 4.044 12 C -0.058 4.058 13 C -0.117 4.117 14 C -0.141 4.141 15 C -0.150 4.150 16 C -0.143 4.143 17 C -0.136 4.136 18 C -0.041 4.041 19 H 0.075 0.925 20 C -0.197 4.197 21 C -0.187 4.187 22 C -0.072 4.072 23 N -0.313 5.313 24 C -0.084 4.084 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.759 -11.592 -2.438 13.172 hybrid contribution -0.686 -0.335 -0.381 0.853 sum 5.074 -11.927 -2.820 13.264 Atomic orbital electron populations 1.69942 1.06056 1.26899 1.50723 1.24968 0.94805 0.99191 0.95533 0.86649 0.79565 0.82914 0.78966 1.19854 1.21498 1.20176 1.21238 0.93947 0.89613 1.49415 0.90912 1.19941 0.90263 0.87469 0.96459 1.62320 1.38780 1.02257 1.21050 1.21097 0.92957 0.90217 1.00103 1.19996 0.97288 0.95083 0.93418 1.21070 0.96150 0.97650 0.96785 1.21110 0.97711 0.96176 0.99137 1.21025 1.00377 0.99739 0.93877 1.21028 0.97384 0.99140 0.96773 1.21032 0.97863 0.95959 0.98749 1.22189 0.95398 0.98990 0.87550 0.92476 1.22305 1.00210 1.02319 0.94820 1.22183 1.00003 0.99062 0.97498 1.21966 0.92385 0.97397 0.95420 1.60930 1.18839 1.46225 1.05295 1.22977 0.98785 1.00340 0.86283 0.92900 0.97292 0.95927 0.94672 0.90559 0.85926 0.86512 0.86764 0.86749 0.86871 0.93342 0.89632 0.93077 0.92404 0.91885 0.90694 0.86115 0.85101 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -13.21 6.44 -34.44 -0.22 -13.43 16 8 H 0.07 1.91 5.93 -52.48 -0.31 1.60 16 9 C 0.18 4.46 4.50 -4.97 -0.02 4.44 16 10 N -0.52 -10.61 4.40 -229.42 -1.01 -11.62 16 11 C 0.08 1.50 5.03 -4.97 -0.03 1.47 16 12 C -0.06 -0.91 5.06 -104.62 -0.53 -1.44 16 13 C -0.10 -1.49 9.72 -39.59 -0.38 -1.87 16 14 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 15 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 16 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 17 C -0.12 -1.69 8.37 -39.58 -0.33 -2.02 16 18 C 0.07 1.29 2.25 -67.63 -0.15 1.14 16 19 H 0.06 1.02 6.25 -51.93 -0.32 0.70 16 20 C -0.16 -2.80 4.64 -26.61 -0.12 -2.92 16 21 C -0.15 -2.21 6.08 -26.65 -0.16 -2.37 16 22 C 0.06 0.92 6.56 -3.83 -0.03 0.89 16 23 N -0.69 -11.67 6.87 -113.81 -0.78 -12.45 16 24 C 0.04 0.88 4.55 -3.83 -0.02 0.86 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.01 0.24 5.42 -51.93 -0.28 -0.04 16 27 H 0.02 0.60 7.63 -51.93 -0.40 0.20 16 28 H 0.04 0.61 6.13 -51.93 -0.32 0.29 16 29 H 0.08 1.37 7.59 -51.92 -0.39 0.97 16 30 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.11 1.55 7.93 -52.49 -0.42 1.13 16 35 H 0.05 0.82 6.55 -51.93 -0.34 0.48 16 36 H 0.09 1.81 5.91 -51.93 -0.31 1.50 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.32 4.87 8.86 -39.29 -0.35 4.52 16 42 H 0.13 3.06 4.84 -51.93 -0.25 2.81 16 43 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -27.61 328.26 -11.03 -38.64 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.62 Total: 9.02 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -3.29 Total: -19.86 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -1.06 Total: -48.93 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.61 -11.03 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246522355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.210 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds