Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47168 * 239.99777 * 3 2 1 5 5 H 1.48506 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47278 * 119.99818 * 3 2 1 7 7 C 1.37870 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00474 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99833 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46851 * 174.54202 * 9 7 2 11 11 C 1.46898 * 110.99756 * 161.86954 * 10 9 7 12 12 C 1.50705 * 109.47137 * 199.84332 * 11 10 9 13 13 C 1.38228 * 120.00556 * 85.51495 * 12 11 10 14 14 C 1.38234 * 120.00404 * 180.02562 * 13 12 11 15 15 C 1.38227 * 119.99810 * 0.25478 * 14 13 12 16 16 C 1.38237 * 120.00195 * 359.46240 * 15 14 13 17 17 C 1.38234 * 119.99777 * 0.53759 * 16 15 14 18 18 C 1.46895 * 111.00631 * 285.82137 * 10 9 7 19 19 H 1.09000 * 109.50765 * 185.97950 * 18 10 9 20 20 C 1.53119 * 109.50142 * 306.05960 * 18 10 9 21 21 C 1.53121 * 109.16108 * 177.59049 * 20 18 10 22 22 C 1.53036 * 109.27908 * 302.34436 * 21 20 18 23 23 N 1.46853 * 109.52130 * 59.17975 * 22 21 20 24 24 C 1.46851 * 111.23137 * 298.27577 * 23 22 21 25 25 H 0.97000 * 120.00395 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46899 * 54.54855 * 9 7 2 27 27 H 1.08991 * 109.47194 * 294.54585 * 9 7 2 28 28 H 1.08997 * 109.47381 * 79.84246 * 11 10 9 29 29 H 1.09010 * 109.47397 * 319.83728 * 11 10 9 30 30 H 1.08005 * 119.99656 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.00137 * 179.97438 * 14 13 12 32 32 H 1.07999 * 120.00262 * 179.72809 * 15 14 13 33 33 H 1.08000 * 120.00592 * 180.29934 * 16 15 14 34 34 H 1.08001 * 120.00560 * 179.76328 * 17 16 15 35 35 H 1.08992 * 109.52437 * 297.49451 * 20 18 10 36 36 H 1.09000 * 109.52311 * 57.69097 * 20 18 10 37 37 H 1.09000 * 109.50544 * 62.28382 * 21 20 18 38 38 H 1.08998 * 109.50812 * 182.36536 * 21 20 18 39 39 H 1.08999 * 109.46373 * 179.19307 * 22 21 20 40 40 H 1.08999 * 109.46528 * 299.17365 * 22 21 20 41 41 H 1.00897 * 110.99950 * 62.35950 * 23 22 21 42 42 H 1.09001 * 109.42860 * 301.68798 * 24 23 22 43 43 H 1.08999 * 109.49306 * 181.72101 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2003 -3.6125 -0.1306 11 6 1.5865 -4.8796 0.2884 12 6 2.6674 -5.8796 0.6092 13 6 3.2356 -5.9030 1.8691 14 6 4.2275 -6.8198 2.1631 15 6 4.6549 -7.7097 1.1956 16 6 4.0827 -7.6903 -0.0627 17 6 3.0908 -6.7734 -0.3567 18 6 2.7160 -3.7059 -1.5028 19 1 3.3329 -4.5993 -1.5998 20 6 1.5441 -3.7847 -2.4851 21 6 2.0890 -3.8211 -3.9157 22 6 2.9481 -2.5786 -4.1609 23 7 4.0554 -2.5496 -3.1968 24 6 3.5578 -2.4672 -1.8176 25 1 -0.4851 0.8400 -0.0004 26 1 0.5535 -2.5159 -0.8369 27 1 0.6993 -2.6001 0.9351 28 1 0.9625 -5.2652 -0.5178 29 1 0.9732 -4.7111 1.1737 30 1 2.9052 -5.2044 2.6235 31 1 4.6717 -6.8378 3.1473 32 1 5.4329 -8.4231 1.4239 33 1 4.4132 -8.3888 -0.8172 34 1 2.6463 -6.7556 -1.3408 35 1 0.9672 -4.6890 -2.2921 36 1 0.9052 -2.9104 -2.3609 37 1 2.6964 -4.7159 -4.0511 38 1 1.2583 -3.8348 -4.6213 39 1 3.3493 -2.6085 -5.1739 40 1 2.3368 -1.6844 -4.0386 41 1 4.6593 -3.3491 -3.3156 42 1 2.9442 -1.5732 -1.7064 43 1 4.4012 -2.4166 -1.1290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246522355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 17.283907 kcal Electronic energy + Delta-G solvation = -22094.595675 eV Core-core repulsion = 19138.590055 eV Total energy + Delta-G solvation = -2956.005620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90480 -39.66109 -37.02656 -34.79190 -32.67757 -32.35191 -31.72016 -30.26495 -29.04782 -26.03948 -25.02384 -23.94099 -23.28577 -22.62291 -21.82023 -20.40584 -18.51910 -17.48260 -17.05098 -16.76765 -16.38695 -16.23590 -15.96441 -15.45280 -15.38829 -14.90793 -14.68102 -14.20773 -14.12279 -13.75582 -13.55300 -13.41823 -13.17873 -13.00241 -12.76347 -12.68958 -12.49699 -12.48408 -12.08077 -12.01897 -11.76652 -11.70734 -11.51748 -11.18386 -11.03888 -10.50164 -9.73779 -9.60032 -9.25360 -8.82685 -8.14588 -6.17495 0.51797 0.58134 1.42294 1.44025 1.51173 2.42288 2.89001 3.16234 3.35288 3.65009 3.82894 3.94996 4.02004 4.09597 4.19316 4.24239 4.29009 4.33177 4.41582 4.54656 4.60928 4.64292 4.73932 4.75558 4.84022 4.96259 5.02526 5.06786 5.17101 5.17967 5.19566 5.24580 5.31005 5.48529 5.63634 5.67572 5.68084 5.73902 5.83501 6.07675 6.15330 6.20228 6.44619 6.66809 6.69927 6.92787 7.45705 8.94753 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.006365 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.180105 B = 4398.092047 C = 5294.323169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.200 3.800 10 N -0.528 5.528 11 C 0.089 3.911 12 C -0.077 4.077 13 C -0.119 4.119 14 C -0.125 4.125 15 C -0.127 4.127 16 C -0.122 4.122 17 C -0.125 4.125 18 C 0.076 3.924 19 H 0.075 0.925 20 C -0.151 4.151 21 C -0.138 4.138 22 C 0.058 3.942 23 N -0.686 5.686 24 C 0.055 3.945 25 H 0.261 0.739 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.340 0.660 42 H 0.092 0.908 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -14.634 -3.929 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.088 0.912 9 C 0.074 3.926 10 N -0.251 5.251 11 C -0.039 4.039 12 C -0.078 4.078 13 C -0.137 4.137 14 C -0.143 4.143 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.143 4.143 18 C -0.034 4.034 19 H 0.093 0.907 20 C -0.190 4.190 21 C -0.178 4.178 22 C -0.071 4.071 23 N -0.315 5.315 24 C -0.075 4.075 25 H 0.070 0.930 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.158 0.842 42 H 0.109 0.891 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.188 -13.704 -3.662 16.378 hybrid contribution -1.392 0.205 0.000 1.407 sum 6.797 -13.499 -3.661 15.550 Atomic orbital electron populations 1.70063 1.07461 1.27499 1.52370 1.25708 0.95494 1.02399 0.95543 0.85693 0.78365 0.79157 0.79049 1.19433 1.21244 1.19614 1.21471 0.93868 0.90526 1.48098 0.91153 1.19568 0.90245 0.88763 0.93991 1.62229 1.37698 1.02486 1.22702 1.21039 0.93861 0.89544 0.99435 1.19828 0.97701 0.95717 0.94558 1.21133 0.97444 0.98668 0.96488 1.21389 0.96822 0.95508 1.00590 1.21450 1.00356 0.99410 0.93283 1.21390 0.96229 0.98697 0.97707 1.21148 0.98494 0.96084 0.98597 1.22161 0.95595 0.99045 0.86601 0.90659 1.22185 0.99308 1.00622 0.96914 1.22126 1.00654 0.99622 0.95404 1.22005 0.91949 0.96617 0.96575 1.60808 1.19470 1.47406 1.03783 1.22577 0.97748 0.99152 0.87977 0.93027 0.99331 0.98951 0.94365 0.92042 0.87125 0.84349 0.83523 0.83763 0.86218 0.92679 0.93795 0.90523 0.90935 0.88616 0.93507 0.84186 0.89052 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.44 0.28 -55.24 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.50 -27.46 6.44 25.60 0.16 -27.29 16 8 H 0.07 3.82 5.93 -2.91 -0.02 3.80 16 9 C 0.20 10.34 4.50 85.56 0.39 10.72 16 10 N -0.53 -22.31 4.40 -879.76 -3.87 -26.18 16 11 C 0.09 3.26 5.03 85.56 0.43 3.69 16 12 C -0.08 -2.44 5.06 -19.86 -0.10 -2.54 16 13 C -0.12 -3.57 9.72 22.27 0.22 -3.35 16 14 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 15 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 16 C -0.12 -2.66 10.05 22.27 0.22 -2.43 16 17 C -0.12 -3.31 8.37 22.27 0.19 -3.12 16 18 C 0.08 2.83 2.25 44.97 0.10 2.94 16 19 H 0.08 2.55 6.25 -2.39 -0.01 2.54 16 20 C -0.15 -5.38 4.64 30.67 0.14 -5.24 16 21 C -0.14 -3.83 6.08 30.65 0.19 -3.65 16 22 C 0.06 1.73 6.56 86.32 0.57 2.30 16 23 N -0.69 -22.28 6.87 -513.98 -3.53 -25.81 16 24 C 0.05 2.18 4.55 86.33 0.39 2.57 16 25 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 26 H -0.01 -0.60 5.42 -2.39 -0.01 -0.62 16 27 H -0.01 -0.43 7.63 -2.39 -0.02 -0.45 16 28 H 0.04 1.35 6.13 -2.39 -0.01 1.34 16 29 H 0.06 2.37 7.59 -2.38 -0.02 2.35 16 30 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.12 2.95 7.93 -2.91 -0.02 2.93 16 35 H 0.05 1.86 6.55 -2.39 -0.02 1.84 16 36 H 0.04 1.94 5.91 -2.39 -0.01 1.93 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.34 9.26 8.86 -89.70 -0.79 8.47 16 42 H 0.09 4.43 4.84 -2.39 -0.01 4.42 16 43 H 0.06 2.32 7.91 -2.39 -0.02 2.30 16 Total: -1.00 -62.36 328.26 -1.08 -63.45 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.20 Total: 26.87 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.80 Total: -29.78 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -7.12 Total: -107.23 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -62.36 -1.08 -63.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246522355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.730 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds