Wall clock time and date at job start Mon Mar 30 2020 03:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48491 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46799 * 300.00174 * 3 2 1 6 6 H 1.48501 * 109.47275 * 59.99854 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99940 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47224 * 184.29444 * 9 7 2 11 11 C 1.46895 * 111.00298 * 202.93659 * 10 9 7 12 12 C 1.50696 * 109.47413 * 168.56864 * 11 10 9 13 13 C 1.38238 * 119.99811 * 275.49934 * 12 11 10 14 14 C 1.38234 * 119.99839 * 179.76585 * 13 12 11 15 15 C 1.38235 * 120.00247 * 0.50472 * 14 13 12 16 16 C 1.38231 * 119.99474 * 359.74351 * 15 14 13 17 17 C 1.38230 * 120.00779 * 0.02562 * 16 15 14 18 18 C 1.46905 * 110.99554 * 78.97998 * 10 9 7 19 19 C 1.53115 * 109.52064 * 60.09258 * 18 10 9 20 20 C 1.53045 * 109.27505 * 182.43845 * 19 18 10 21 21 N 1.46842 * 109.52116 * 59.17957 * 20 19 18 22 22 C 1.46852 * 111.20125 * 298.25396 * 21 20 19 23 23 C 1.53032 * 109.51861 * 61.74298 * 22 21 20 24 24 H 0.97003 * 120.00138 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47007 * 64.29998 * 9 7 2 26 26 H 1.08996 * 109.47283 * 304.29886 * 9 7 2 27 27 H 1.09007 * 109.46671 * 288.56576 * 11 10 9 28 28 H 1.09000 * 109.47440 * 48.56135 * 11 10 9 29 29 H 1.08001 * 119.99670 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.99522 * 180.22776 * 14 13 12 31 31 H 1.07996 * 120.00375 * 179.72889 * 15 14 13 32 32 H 1.08004 * 119.99527 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.00483 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.56887 * 180.24950 * 18 10 9 35 35 H 1.09000 * 109.50373 * 62.49992 * 19 18 10 36 36 H 1.09003 * 109.50384 * 302.37391 * 19 18 10 37 37 H 1.08994 * 109.45929 * 299.16083 * 20 19 18 38 38 H 1.09001 * 109.45774 * 179.19359 * 20 19 18 39 39 H 1.00901 * 111.00402 * 62.35592 * 21 20 19 40 40 H 1.08990 * 109.46283 * 181.76084 * 22 21 20 41 41 H 1.09000 * 109.45761 * 301.73373 * 22 21 20 42 42 H 1.09000 * 109.50616 * 180.87910 * 23 22 21 43 43 H 1.09004 * 109.50555 * 60.76581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2024 -3.6138 0.1026 11 6 1.6188 -4.8544 -0.4248 12 6 2.6976 -5.8973 -0.5644 13 6 3.4849 -5.9296 -1.7002 14 6 4.4777 -6.8832 -1.8262 15 6 4.6764 -7.8111 -0.8210 16 6 3.8857 -7.7820 0.3125 17 6 2.8960 -6.8255 0.4407 18 6 2.6555 -3.7926 1.4885 19 6 1.4516 -4.0932 2.3856 20 6 1.9217 -4.2182 3.8367 21 7 2.5649 -2.9657 4.2537 22 6 3.7515 -2.6805 3.4368 23 6 3.3361 -2.5098 1.9739 24 1 -0.4850 0.8401 -0.0004 25 1 0.6831 -2.5907 -0.9264 26 1 0.5682 -2.5244 0.8486 27 1 0.8515 -5.2149 0.2604 28 1 1.1727 -4.6602 -1.4002 29 1 3.3265 -5.2076 -2.4877 30 1 5.0952 -6.9060 -2.7120 31 1 5.4491 -8.5588 -0.9213 32 1 4.0406 -8.5072 1.0977 33 1 2.2781 -6.8030 1.3260 34 1 3.3623 -4.6209 1.5375 35 1 0.9882 -5.0284 2.0714 36 1 0.7272 -3.2826 2.3063 37 1 2.6356 -5.0377 3.9179 38 1 1.0647 -4.4181 4.4800 39 1 1.9123 -2.1967 4.2243 40 1 4.2236 -1.7638 3.7898 41 1 4.4568 -3.5074 3.5199 42 1 4.2189 -2.3135 1.3654 43 1 2.6413 -1.6743 1.8880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246522623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:28 Heat of formation + Delta-G solvation = 31.109843 kcal Electronic energy + Delta-G solvation = -22126.866880 eV Core-core repulsion = 19171.460797 eV Total energy + Delta-G solvation = -2955.406082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.58496 -38.41294 -35.60604 -32.85715 -31.40856 -30.71051 -30.28968 -29.28442 -27.20484 -24.69048 -23.10138 -22.52948 -22.08645 -21.40261 -20.54082 -18.81776 -16.71488 -16.19977 -15.58262 -15.27374 -15.03011 -14.62034 -14.48549 -14.12881 -13.83777 -13.52856 -13.27154 -13.14858 -12.52318 -12.35331 -12.23168 -12.11944 -11.68712 -11.48245 -11.23160 -11.11021 -10.99542 -10.75652 -10.64223 -10.51351 -10.42762 -10.09390 -10.01669 -9.36435 -9.19134 -8.68737 -8.51007 -8.41351 -7.93616 -7.19633 -6.06152 -4.03042 1.58633 1.63148 3.27447 3.36276 3.40617 3.99441 4.39864 4.72959 4.97353 5.08118 5.13261 5.19704 5.25698 5.31271 5.34000 5.47159 5.62052 5.68430 5.74800 5.87269 5.89812 5.96064 6.01430 6.06345 6.19067 6.22759 6.28377 6.31556 6.35393 6.54440 6.61246 6.67677 6.70319 6.84871 6.94913 7.15810 7.23538 7.33982 7.43632 7.48417 7.76119 7.81221 8.09463 8.17975 8.51101 9.01916 9.56270 11.03529 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.006342 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.525305 B = 4413.892198 C = 5307.481832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.053 3.947 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.494 4.494 8 H 0.069 0.931 9 C 0.185 3.815 10 N -0.523 5.523 11 C 0.085 3.915 12 C -0.060 4.060 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.117 4.117 18 C 0.103 3.897 19 C -0.195 4.195 20 C 0.066 3.934 21 N -0.689 5.689 22 C 0.055 3.945 23 C -0.158 4.158 24 H 0.260 0.740 25 H 0.021 0.979 26 H 0.007 0.993 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.342 0.658 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -12.259 2.384 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.533 4.533 8 H 0.087 0.913 9 C 0.060 3.940 10 N -0.246 5.246 11 C -0.043 4.043 12 C -0.060 4.060 13 C -0.117 4.117 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.006 4.006 19 C -0.236 4.236 20 C -0.065 4.065 21 N -0.317 5.317 22 C -0.075 4.075 23 C -0.197 4.197 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.159 0.841 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.110 -12.296 2.591 13.973 hybrid contribution -0.743 0.957 -0.493 1.308 sum 5.367 -11.339 2.099 12.719 Atomic orbital electron populations 1.69962 1.06003 1.26604 1.51247 1.24980 0.94811 0.99139 0.95885 0.86536 0.80232 0.83766 0.77543 1.19592 1.21123 1.21122 1.21275 0.93878 0.89527 1.48629 0.91296 1.19885 0.90128 0.87595 0.96376 1.62391 1.41103 1.03061 1.18061 1.21099 0.92830 0.89946 1.00377 1.19984 0.97143 0.95141 0.93741 1.21071 0.94997 0.97668 0.97946 1.21111 0.98345 0.95802 0.98930 1.21032 0.99923 0.99460 0.94579 1.21036 0.96448 0.98962 0.97867 1.21062 0.98521 0.95426 0.98513 1.21452 0.94571 0.97425 0.87121 1.23000 1.01133 1.02017 0.97443 1.21864 0.97964 0.92894 0.93758 1.60760 1.10305 1.05730 1.54933 1.22071 0.92627 1.00559 0.92234 1.22769 1.02388 1.00062 0.94488 0.93037 0.96091 0.97504 0.94738 0.90584 0.85940 0.86535 0.86755 0.86679 0.86675 0.92031 0.92627 0.90385 0.91869 0.91745 0.84095 0.91359 0.92320 0.91931 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 13.29 55.43 0.74 -24.87 16 2 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.49 -12.96 6.32 -34.44 -0.22 -13.18 16 8 H 0.07 1.83 6.39 -52.49 -0.34 1.49 16 9 C 0.18 4.50 4.45 -4.98 -0.02 4.48 16 10 N -0.52 -10.68 4.47 -229.38 -1.03 -11.71 16 11 C 0.09 1.51 4.91 -4.98 -0.02 1.49 16 12 C -0.06 -0.94 4.76 -104.62 -0.50 -1.44 16 13 C -0.10 -1.48 9.72 -39.58 -0.38 -1.87 16 14 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 15 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 16 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 17 C -0.12 -1.66 8.33 -39.58 -0.33 -1.99 16 18 C 0.10 1.90 2.07 -67.59 -0.14 1.76 16 19 C -0.20 -3.32 4.75 -26.65 -0.13 -3.44 16 20 C 0.07 0.98 6.55 -3.83 -0.03 0.96 16 21 N -0.69 -10.85 6.87 -113.82 -0.78 -11.64 16 22 C 0.06 0.89 6.55 -3.83 -0.03 0.87 16 23 C -0.16 -3.02 4.06 -26.65 -0.11 -3.13 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.02 0.56 7.65 -51.93 -0.40 0.16 16 26 H 0.01 0.19 5.52 -51.93 -0.29 -0.10 16 27 H 0.03 0.60 6.03 -51.93 -0.31 0.28 16 28 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.12 1.55 7.74 -52.49 -0.41 1.14 16 34 H 0.06 1.12 6.28 -51.93 -0.33 0.79 16 35 H 0.06 0.89 6.16 -51.93 -0.32 0.57 16 36 H 0.08 1.55 5.96 -51.93 -0.31 1.24 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.34 5.54 8.86 -39.29 -0.35 5.20 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 43 H 0.11 2.55 5.19 -51.93 -0.27 2.28 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -27.65 327.91 -10.97 -38.63 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.63 Total: 8.84 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -3.19 Total: -20.18 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -1.07 Total: -48.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.65 -10.97 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246522623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.739 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds