Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48491 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46799 * 300.00174 * 3 2 1 6 6 H 1.48501 * 109.47275 * 59.99854 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99940 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47224 * 184.29444 * 9 7 2 11 11 C 1.46895 * 111.00298 * 202.93659 * 10 9 7 12 12 C 1.50696 * 109.47413 * 168.56864 * 11 10 9 13 13 C 1.38238 * 119.99811 * 275.49934 * 12 11 10 14 14 C 1.38234 * 119.99839 * 179.76585 * 13 12 11 15 15 C 1.38235 * 120.00247 * 0.50472 * 14 13 12 16 16 C 1.38231 * 119.99474 * 359.74351 * 15 14 13 17 17 C 1.38230 * 120.00779 * 0.02562 * 16 15 14 18 18 C 1.46905 * 110.99554 * 78.97998 * 10 9 7 19 19 C 1.53115 * 109.52064 * 60.09258 * 18 10 9 20 20 C 1.53045 * 109.27505 * 182.43845 * 19 18 10 21 21 N 1.46842 * 109.52116 * 59.17957 * 20 19 18 22 22 C 1.46852 * 111.20125 * 298.25396 * 21 20 19 23 23 C 1.53032 * 109.51861 * 61.74298 * 22 21 20 24 24 H 0.97003 * 120.00138 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47007 * 64.29998 * 9 7 2 26 26 H 1.08996 * 109.47283 * 304.29886 * 9 7 2 27 27 H 1.09007 * 109.46671 * 288.56576 * 11 10 9 28 28 H 1.09000 * 109.47440 * 48.56135 * 11 10 9 29 29 H 1.08001 * 119.99670 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.99522 * 180.22776 * 14 13 12 31 31 H 1.07996 * 120.00375 * 179.72889 * 15 14 13 32 32 H 1.08004 * 119.99527 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.00483 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.56887 * 180.24950 * 18 10 9 35 35 H 1.09000 * 109.50373 * 62.49992 * 19 18 10 36 36 H 1.09003 * 109.50384 * 302.37391 * 19 18 10 37 37 H 1.08994 * 109.45929 * 299.16083 * 20 19 18 38 38 H 1.09001 * 109.45774 * 179.19359 * 20 19 18 39 39 H 1.00901 * 111.00402 * 62.35592 * 21 20 19 40 40 H 1.08990 * 109.46283 * 181.76084 * 22 21 20 41 41 H 1.09000 * 109.45761 * 301.73373 * 22 21 20 42 42 H 1.09000 * 109.50616 * 180.87910 * 23 22 21 43 43 H 1.09004 * 109.50555 * 60.76581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2024 -3.6138 0.1026 11 6 1.6188 -4.8544 -0.4248 12 6 2.6976 -5.8973 -0.5644 13 6 3.4849 -5.9296 -1.7002 14 6 4.4777 -6.8832 -1.8262 15 6 4.6764 -7.8111 -0.8210 16 6 3.8857 -7.7820 0.3125 17 6 2.8960 -6.8255 0.4407 18 6 2.6555 -3.7926 1.4885 19 6 1.4516 -4.0932 2.3856 20 6 1.9217 -4.2182 3.8367 21 7 2.5649 -2.9657 4.2537 22 6 3.7515 -2.6805 3.4368 23 6 3.3361 -2.5098 1.9739 24 1 -0.4850 0.8401 -0.0004 25 1 0.6831 -2.5907 -0.9264 26 1 0.5682 -2.5244 0.8486 27 1 0.8515 -5.2149 0.2604 28 1 1.1727 -4.6602 -1.4002 29 1 3.3265 -5.2076 -2.4877 30 1 5.0952 -6.9060 -2.7120 31 1 5.4491 -8.5588 -0.9213 32 1 4.0406 -8.5072 1.0977 33 1 2.2781 -6.8030 1.3260 34 1 3.3623 -4.6209 1.5375 35 1 0.9882 -5.0284 2.0714 36 1 0.7272 -3.2826 2.3063 37 1 2.6356 -5.0377 3.9179 38 1 1.0647 -4.4181 4.4800 39 1 1.9123 -2.1967 4.2243 40 1 4.2236 -1.7638 3.7898 41 1 4.4568 -3.5074 3.5199 42 1 4.2189 -2.3135 1.3654 43 1 2.6413 -1.6743 1.8880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246522623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = 13.942115 kcal Electronic energy + Delta-G solvation = -22127.611328 eV Core-core repulsion = 19171.460797 eV Total energy + Delta-G solvation = -2956.150531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.95001 -39.61923 -37.07200 -34.80938 -32.74980 -31.82859 -31.60882 -30.79532 -28.98406 -26.16261 -24.79462 -23.80894 -23.25801 -22.85212 -21.80269 -20.35198 -18.49976 -17.52195 -17.02828 -16.79463 -16.41789 -16.10569 -15.79007 -15.52877 -15.27174 -15.06529 -14.68470 -14.22457 -14.09483 -13.74423 -13.62944 -13.43063 -13.15956 -13.07260 -12.83649 -12.67765 -12.58101 -12.43767 -12.07148 -11.97298 -11.80019 -11.71062 -11.51689 -11.17774 -10.92422 -10.52948 -9.73661 -9.61963 -9.28634 -8.86083 -8.15145 -6.18320 0.51004 0.57858 1.38328 1.41057 1.52636 2.40657 2.89468 3.15305 3.37038 3.56110 3.84990 3.95486 4.02715 4.07369 4.22252 4.28008 4.33151 4.42731 4.48415 4.55727 4.61823 4.64128 4.72334 4.79024 4.83141 4.89709 4.96941 5.04361 5.15018 5.18145 5.20551 5.23452 5.27288 5.50873 5.63760 5.67719 5.73024 5.78039 5.83877 6.12492 6.14893 6.19732 6.41264 6.46672 6.66779 6.92153 7.44607 8.94201 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.006342 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.525305 B = 4413.892198 C = 5307.481832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.493 4.493 8 H 0.064 0.936 9 C 0.203 3.797 10 N -0.533 5.533 11 C 0.090 3.910 12 C -0.079 4.079 13 C -0.119 4.119 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.123 4.123 18 C 0.107 3.893 19 C -0.184 4.184 20 C 0.071 3.929 21 N -0.685 5.685 22 C 0.064 3.936 23 C -0.153 4.153 24 H 0.261 0.739 25 H -0.011 1.011 26 H -0.012 1.012 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.337 0.663 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -14.107 3.601 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.077 3.923 10 N -0.255 5.255 11 C -0.038 4.038 12 C -0.080 4.080 13 C -0.137 4.137 14 C -0.143 4.143 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.142 4.142 18 C -0.001 4.001 19 C -0.225 4.225 20 C -0.060 4.060 21 N -0.313 5.313 22 C -0.066 4.066 23 C -0.192 4.192 24 H 0.070 0.930 25 H 0.007 0.993 26 H 0.005 0.995 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.301 -14.163 3.815 16.854 hybrid contribution -1.390 1.422 -0.906 2.185 sum 6.911 -12.742 2.909 14.784 Atomic orbital electron populations 1.70080 1.07476 1.27367 1.52689 1.25729 0.95513 1.02427 0.95751 0.85545 0.79184 0.79738 0.77500 1.18919 1.21042 1.20539 1.21449 0.93588 0.90471 1.47616 0.91830 1.19505 0.90074 0.88923 0.93817 1.62301 1.39973 1.03344 1.19911 1.21030 0.93892 0.89504 0.99340 1.19807 0.97391 0.95595 0.95198 1.21131 0.96211 0.98664 0.97722 1.21388 0.97659 0.95139 1.00157 1.21455 1.00010 0.99284 0.93690 1.21398 0.95313 0.98602 0.98732 1.21173 0.99296 0.95527 0.98192 1.21455 0.95171 0.97373 0.86108 1.22866 0.99603 1.00993 0.99006 1.21923 0.98971 0.92946 0.92112 1.60814 1.10176 1.05941 1.54339 1.22019 0.93048 1.01713 0.89863 1.22617 1.00812 0.99033 0.96738 0.93035 0.99332 0.99454 0.94548 0.92153 0.87143 0.84353 0.83512 0.83731 0.86056 0.90834 0.91670 0.93908 0.90088 0.90102 0.84610 0.90555 0.90653 0.93372 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.49 -26.86 6.32 25.60 0.16 -26.69 16 8 H 0.06 3.47 6.39 -2.91 -0.02 3.46 16 9 C 0.20 10.45 4.45 85.56 0.38 10.83 16 10 N -0.53 -22.56 4.47 -879.61 -3.93 -26.50 16 11 C 0.09 3.31 4.91 85.56 0.42 3.73 16 12 C -0.08 -2.49 4.76 -19.87 -0.09 -2.59 16 13 C -0.12 -3.55 9.72 22.27 0.22 -3.33 16 14 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 15 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 16 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 17 C -0.12 -3.26 8.33 22.27 0.19 -3.07 16 18 C 0.11 3.95 2.07 44.99 0.09 4.04 16 19 C -0.18 -6.21 4.75 30.65 0.15 -6.07 16 20 C 0.07 1.97 6.55 86.33 0.57 2.53 16 21 N -0.69 -20.45 6.87 -514.02 -3.53 -23.98 16 22 C 0.06 1.96 6.55 86.32 0.57 2.53 16 23 C -0.15 -5.86 4.06 30.64 0.12 -5.74 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H -0.01 -0.65 7.65 -2.39 -0.02 -0.67 16 26 H -0.01 -0.67 5.52 -2.39 -0.01 -0.68 16 27 H 0.04 1.30 6.03 -2.38 -0.01 1.29 16 28 H 0.06 2.34 7.75 -2.39 -0.02 2.32 16 29 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.12 2.99 7.74 -2.91 -0.02 2.96 16 34 H 0.07 2.57 6.28 -2.39 -0.01 2.55 16 35 H 0.06 2.05 6.16 -2.39 -0.01 2.04 16 36 H 0.04 1.76 5.96 -2.39 -0.01 1.75 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.34 10.74 8.86 -89.69 -0.79 9.95 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 42 H 0.05 1.95 7.69 -2.39 -0.02 1.93 16 43 H 0.08 3.57 5.19 -2.39 -0.01 3.56 16 Total: -1.00 -61.46 327.91 -1.05 -62.51 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.20 Total: 27.66 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.90 Total: -30.78 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -7.18 Total: -105.41 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.46 -1.05 -62.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246522623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.457 kcal (2) G-P(sol) polarization free energy of solvation -61.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds