Wall clock time and date at job start Mon Mar 30 2020 01:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38593 * 120.45069 * 2 1 4 4 C 1.38594 * 118.40059 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.45184 * 179.97438 * 4 3 2 6 6 N 1.32338 * 119.10490 * 359.97438 * 4 3 2 7 7 C 1.31799 * 120.81574 * 0.02562 * 6 4 3 8 8 C 1.50705 * 119.12007 * 179.97438 * 7 6 4 9 9 N 1.46902 * 109.46674 * 89.99788 * 8 7 6 10 10 C 1.46900 * 110.99472 * 169.99928 * 9 8 7 11 11 C 1.50695 * 109.47525 * 284.30923 * 10 9 8 12 12 H 1.08007 * 119.99455 * 4.66739 * 11 10 9 13 13 C 1.37872 * 120.00627 * 184.65872 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00350 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46746 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46831 * 120.00470 * 15 13 11 18 18 H 1.48501 * 109.47353 * 240.00766 * 15 13 11 19 19 C 1.46903 * 111.00091 * 293.94955 * 9 8 7 20 20 C 1.53003 * 109.46875 * 164.05748 * 19 9 8 21 21 C 1.47202 * 109.46902 * 179.46296 * 20 19 9 22 22 N 7.29363 * 138.58972 * 97.39016 * 2 1 3 23 23 N 1.31789 * 121.75265 * 0.25099 * 7 6 4 24 24 H 1.09004 * 109.47111 * 89.99742 * 1 2 3 25 25 H 1.08996 * 109.47647 * 210.00104 * 1 2 3 26 26 H 1.09006 * 109.46994 * 330.00396 * 1 2 3 27 27 H 1.07997 * 120.79725 * 0.04534 * 3 2 1 28 28 H 1.09001 * 109.47087 * 270.02627 * 5 4 3 29 29 H 1.09005 * 109.46842 * 30.02115 * 5 4 3 30 30 H 1.08998 * 109.47406 * 150.01823 * 5 4 3 31 31 H 1.08996 * 109.46924 * 209.99776 * 8 7 6 32 32 H 1.09004 * 109.47018 * 330.00018 * 8 7 6 33 33 H 1.09000 * 109.47667 * 44.31350 * 10 9 8 34 34 H 1.09002 * 109.47182 * 164.31007 * 10 9 8 35 35 H 0.96998 * 119.99691 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46951 * 284.05557 * 19 9 8 37 37 H 1.08999 * 109.47074 * 44.05834 * 19 9 8 38 38 H 1.09002 * 109.46596 * 299.46516 * 20 19 9 39 39 H 1.09001 * 109.47090 * 59.46339 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1948 0.0000 4 6 3.5944 1.1452 -0.0005 5 6 4.4042 2.4162 -0.0012 6 7 4.1963 -0.0334 -0.0005 7 6 3.4954 -1.1495 -0.0005 8 6 4.2203 -2.4708 -0.0011 9 7 4.4563 -2.9003 1.3838 10 6 4.9444 -4.2851 1.4294 11 6 3.7987 -5.2302 1.1748 12 1 2.8234 -4.8409 0.9224 13 6 3.9954 -6.5920 1.2637 14 7 5.1830 -7.0661 1.5714 15 14 2.5749 -7.7635 0.9487 16 1 1.3533 -6.9842 0.6240 17 1 2.9112 -8.6539 -0.1912 18 1 2.3312 -8.5837 2.1625 19 6 5.3874 -1.9912 2.0655 20 6 5.3067 -2.2176 3.5765 21 6 6.2490 -1.3157 4.2588 22 7 6.9771 -0.6205 4.7843 23 7 2.1775 -1.1409 -0.0054 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6899 2.1416 0.0007 28 1 4.5986 2.7226 -1.0290 29 1 3.8491 3.2008 0.5131 30 1 5.3503 2.2445 0.5120 31 1 3.6145 -3.2172 -0.5148 32 1 5.1751 -2.3611 -0.5153 33 1 5.7087 -4.4264 0.6652 34 1 5.3711 -4.4877 2.4118 35 1 5.3213 -8.0241 1.6343 36 1 6.4033 -2.1873 1.7224 37 1 5.1198 -0.9594 1.8379 38 1 4.2931 -2.0123 3.9209 39 1 5.5650 -3.2520 3.8032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248977286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:10 Heat of formation + Delta-G solvation = 71.311030 kcal Electronic energy + Delta-G solvation = -20646.313367 eV Core-core repulsion = 17589.110195 eV Total energy + Delta-G solvation = -3057.203172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00386 -37.48405 -36.09009 -34.68268 -33.47269 -32.61676 -30.88774 -29.31654 -28.03566 -27.31203 -25.86606 -23.18122 -22.11422 -21.60820 -20.02280 -17.57268 -17.24119 -16.48297 -15.74283 -15.44748 -15.15121 -14.78373 -14.52293 -14.11408 -13.79748 -13.54591 -13.49233 -13.20158 -12.76432 -12.71296 -12.46071 -12.40405 -12.17827 -12.07190 -11.99370 -11.46598 -11.37642 -10.96443 -10.86595 -10.67152 -10.60992 -10.31075 -10.09937 -9.76874 -9.33769 -9.13768 -9.00637 -8.43715 -7.44525 -6.03483 -4.04296 1.04101 1.22277 2.99861 3.05563 3.32759 3.40944 3.46628 3.78962 4.05664 4.17240 4.25206 4.43262 4.46317 5.00384 5.09161 5.12489 5.23225 5.33578 5.36432 5.38362 5.44690 5.48150 5.54400 5.58203 5.73918 5.81812 5.92208 5.94137 6.11291 6.23294 6.34799 6.37562 6.64559 7.06477 7.21091 7.27290 7.77409 7.81223 7.95250 8.08378 8.38764 8.45799 9.04803 9.60488 11.07022 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.005936 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.276167 B = 4716.235856 C = 6304.641847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.175 3.825 3 C -0.243 4.243 4 C 0.172 3.828 5 C -0.104 4.104 6 N -0.524 5.524 7 C 0.349 3.651 8 C 0.129 3.871 9 N -0.524 5.524 10 C 0.190 3.810 11 C -0.504 4.504 12 H 0.068 0.932 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.055 3.945 20 C -0.027 4.027 21 C 0.222 3.778 22 N -0.460 5.460 23 N -0.500 5.500 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.052 0.948 33 H -0.004 1.004 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 15.794 -3.664 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.028 3.972 3 C -0.266 4.266 4 C 0.026 3.974 5 C -0.162 4.162 6 N -0.241 5.241 7 C 0.082 3.918 8 C 0.000 4.000 9 N -0.249 5.249 10 C 0.066 3.934 11 C -0.543 4.543 12 H 0.086 0.914 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.075 4.075 20 C -0.068 4.068 21 C -0.096 4.096 22 N -0.138 5.138 23 N -0.215 5.215 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.014 0.986 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.135 15.801 -2.608 16.818 hybrid contribution -0.657 -0.225 -0.732 1.009 sum -5.792 15.576 -3.339 16.950 Atomic orbital electron populations 1.20757 0.88179 1.03954 1.03369 1.21776 0.97553 0.88260 0.89569 1.22466 0.95689 1.00265 1.08135 1.21676 0.91514 0.94178 0.90076 1.20745 1.00154 0.91958 1.03320 1.68188 1.41873 0.98360 1.15642 1.23442 0.86494 0.94135 0.87765 1.20759 0.97902 0.89141 0.92211 1.62030 1.45691 1.04642 1.12579 1.19894 0.95312 0.80828 0.97402 1.21213 0.96571 0.90067 1.46446 0.91358 1.24962 0.95733 0.98342 0.95454 1.69958 1.21606 1.13277 1.49083 0.86468 0.82661 0.80801 0.77683 1.19512 1.21245 1.21137 1.21999 0.95789 0.98276 0.91427 1.19381 0.95750 0.97072 0.94574 1.29423 0.93640 0.93448 0.93069 1.81121 1.11031 1.11211 1.10417 1.68205 1.09819 1.29625 1.13889 0.89985 0.89643 0.90545 0.84282 0.89998 0.90478 0.90064 0.87049 0.92993 0.98643 0.94069 0.92981 0.94465 0.90658 0.87102 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.22 36.00 0.37 -0.63 16 2 C 0.17 2.33 6.82 -82.25 -0.56 1.77 16 3 C -0.24 -2.81 9.54 -39.32 -0.38 -3.18 16 4 C 0.17 2.20 6.82 -82.24 -0.56 1.64 16 5 C -0.10 -0.94 10.22 36.01 0.37 -0.57 16 6 N -0.52 -8.29 8.80 -6.99 -0.06 -8.35 16 7 C 0.35 6.04 6.48 -157.19 -1.02 5.03 16 8 C 0.13 2.42 5.23 -4.97 -0.03 2.39 16 9 N -0.52 -10.33 4.37 -237.51 -1.04 -11.37 16 10 C 0.19 4.46 4.59 -4.98 -0.02 4.44 16 11 C -0.50 -13.19 8.61 -34.44 -0.30 -13.48 16 12 H 0.07 1.81 7.66 -52.48 -0.40 1.41 16 13 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 15 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.06 0.94 4.78 -3.82 -0.02 0.92 16 20 C -0.03 -0.41 5.77 -29.52 -0.17 -0.59 16 21 C 0.22 3.52 15.43 -20.77 -0.32 3.20 16 22 N -0.46 -8.15 18.53 42.14 0.78 -7.37 16 23 N -0.50 -8.48 10.27 -6.99 -0.07 -8.55 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.11 2.24 7.32 -51.93 -0.38 1.86 16 32 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.00 -0.11 8.00 -51.93 -0.42 -0.52 16 34 H 0.04 1.00 6.24 -51.93 -0.32 0.68 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 37 H 0.08 1.27 5.81 -51.93 -0.30 0.97 16 38 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.12 1.85 6.52 -51.93 -0.34 1.51 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -30.84 337.09 -7.84 -38.68 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.51 Total: -1.68 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.73 Total: 2.35 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.35 Total: -60.31 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.84 -7.84 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248977286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.992 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds