Wall clock time and date at job start Mon Mar 30 2020 01:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38593 * 120.45069 * 2 1 4 4 C 1.38594 * 118.40059 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.45184 * 179.97438 * 4 3 2 6 6 N 1.32338 * 119.10490 * 359.97438 * 4 3 2 7 7 C 1.31799 * 120.81574 * 0.02562 * 6 4 3 8 8 C 1.50705 * 119.12007 * 179.97438 * 7 6 4 9 9 N 1.46902 * 109.46674 * 89.99788 * 8 7 6 10 10 C 1.46900 * 110.99472 * 169.99928 * 9 8 7 11 11 C 1.50695 * 109.47525 * 284.30923 * 10 9 8 12 12 H 1.08007 * 119.99455 * 4.66739 * 11 10 9 13 13 C 1.37872 * 120.00627 * 184.65872 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00350 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46746 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46831 * 120.00470 * 15 13 11 18 18 H 1.48501 * 109.47353 * 240.00766 * 15 13 11 19 19 C 1.46903 * 111.00091 * 293.94955 * 9 8 7 20 20 C 1.53003 * 109.46875 * 164.05748 * 19 9 8 21 21 C 1.47202 * 109.46902 * 179.46296 * 20 19 9 22 22 N 7.29363 * 138.58972 * 97.39016 * 2 1 3 23 23 N 1.31789 * 121.75265 * 0.25099 * 7 6 4 24 24 H 1.09004 * 109.47111 * 89.99742 * 1 2 3 25 25 H 1.08996 * 109.47647 * 210.00104 * 1 2 3 26 26 H 1.09006 * 109.46994 * 330.00396 * 1 2 3 27 27 H 1.07997 * 120.79725 * 0.04534 * 3 2 1 28 28 H 1.09001 * 109.47087 * 270.02627 * 5 4 3 29 29 H 1.09005 * 109.46842 * 30.02115 * 5 4 3 30 30 H 1.08998 * 109.47406 * 150.01823 * 5 4 3 31 31 H 1.08996 * 109.46924 * 209.99776 * 8 7 6 32 32 H 1.09004 * 109.47018 * 330.00018 * 8 7 6 33 33 H 1.09000 * 109.47667 * 44.31350 * 10 9 8 34 34 H 1.09002 * 109.47182 * 164.31007 * 10 9 8 35 35 H 0.96998 * 119.99691 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46951 * 284.05557 * 19 9 8 37 37 H 1.08999 * 109.47074 * 44.05834 * 19 9 8 38 38 H 1.09002 * 109.46596 * 299.46516 * 20 19 9 39 39 H 1.09001 * 109.47090 * 59.46339 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1948 0.0000 4 6 3.5944 1.1452 -0.0005 5 6 4.4042 2.4162 -0.0012 6 7 4.1963 -0.0334 -0.0005 7 6 3.4954 -1.1495 -0.0005 8 6 4.2203 -2.4708 -0.0011 9 7 4.4563 -2.9003 1.3838 10 6 4.9444 -4.2851 1.4294 11 6 3.7987 -5.2302 1.1748 12 1 2.8234 -4.8409 0.9224 13 6 3.9954 -6.5920 1.2637 14 7 5.1830 -7.0661 1.5714 15 14 2.5749 -7.7635 0.9487 16 1 1.3533 -6.9842 0.6240 17 1 2.9112 -8.6539 -0.1912 18 1 2.3312 -8.5837 2.1625 19 6 5.3874 -1.9912 2.0655 20 6 5.3067 -2.2176 3.5765 21 6 6.2490 -1.3157 4.2588 22 7 6.9771 -0.6205 4.7843 23 7 2.1775 -1.1409 -0.0054 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6899 2.1416 0.0007 28 1 4.5986 2.7226 -1.0290 29 1 3.8491 3.2008 0.5131 30 1 5.3503 2.2445 0.5120 31 1 3.6145 -3.2172 -0.5148 32 1 5.1751 -2.3611 -0.5153 33 1 5.7087 -4.4264 0.6652 34 1 5.3711 -4.4877 2.4118 35 1 5.3213 -8.0241 1.6343 36 1 6.4033 -2.1873 1.7224 37 1 5.1198 -0.9594 1.8379 38 1 4.2931 -2.0123 3.9209 39 1 5.5650 -3.2520 3.8032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248977286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:10 Heat of formation + Delta-G solvation = 52.022464 kcal Electronic energy + Delta-G solvation = -20647.149782 eV Core-core repulsion = 17589.110195 eV Total energy + Delta-G solvation = -3058.039587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08868 -38.97811 -37.50211 -35.67892 -34.85997 -34.32547 -32.31553 -30.23067 -29.59208 -28.31192 -27.39114 -24.89127 -23.47611 -22.56298 -21.56356 -18.67321 -18.65775 -18.35119 -17.08970 -16.63251 -16.36915 -16.15453 -16.01783 -15.66227 -15.13170 -14.77896 -14.33667 -14.26301 -14.09375 -13.95413 -13.77870 -13.51612 -13.39114 -13.23350 -13.06745 -12.98457 -12.90112 -12.63870 -12.49091 -12.35335 -12.05936 -11.82585 -11.42727 -11.23350 -11.11102 -10.50744 -10.20768 -10.10995 -9.09927 -8.10656 -6.17572 -0.02826 0.21545 1.47030 1.49528 1.61979 1.66805 1.73904 2.47327 2.63194 2.93375 2.94713 3.18569 3.23498 3.55708 3.67098 4.04999 4.11610 4.18291 4.18920 4.40739 4.47922 4.56042 4.58176 4.71167 4.75221 4.80013 4.84223 4.89360 5.00469 5.04301 5.05660 5.22289 5.27747 5.29476 5.62560 5.76672 6.12166 6.21973 6.27564 6.50001 6.58519 6.97259 7.28406 7.51095 8.99682 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.005936 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.276167 B = 4716.235856 C = 6304.641847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.158 3.842 3 C -0.226 4.226 4 C 0.157 3.843 5 C -0.100 4.100 6 N -0.543 5.543 7 C 0.331 3.669 8 C 0.135 3.865 9 N -0.525 5.525 10 C 0.204 3.796 11 C -0.511 4.511 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.932 5.932 15 Si 0.958 3.042 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.061 3.939 20 C -0.016 4.016 21 C 0.243 3.757 22 N -0.486 5.486 23 N -0.535 5.535 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.184 0.816 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.049 0.951 33 H -0.030 1.030 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 17.992 -3.643 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.013 3.987 3 C -0.247 4.247 4 C 0.012 3.988 5 C -0.157 4.157 6 N -0.260 5.260 7 C 0.063 3.937 8 C 0.006 3.994 9 N -0.250 5.250 10 C 0.079 3.921 11 C -0.549 4.549 12 H 0.079 0.921 13 C -0.190 4.190 14 N -0.573 5.573 15 Si 0.784 3.216 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.206 1.206 19 C -0.069 4.069 20 C -0.056 4.056 21 C -0.074 4.074 22 N -0.164 5.164 23 N -0.252 5.252 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.127 0.873 27 H 0.201 0.799 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.067 0.933 33 H -0.012 1.012 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.145 0.855 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.922 18.034 -2.589 19.489 hybrid contribution -0.139 -0.777 -0.791 1.118 sum -7.061 17.256 -3.380 18.949 Atomic orbital electron populations 1.20867 0.85573 1.04849 1.04539 1.22466 0.99282 0.87976 0.88990 1.22909 0.95183 1.01372 1.05277 1.22401 0.92877 0.94273 0.89231 1.20855 0.99539 0.90730 1.04583 1.68130 1.42401 0.99038 1.16467 1.22869 0.86888 0.93754 0.90179 1.20536 0.97619 0.90072 0.91218 1.61913 1.46050 1.03336 1.13668 1.19568 0.93838 0.82866 0.95871 1.21448 0.96834 0.90817 1.45850 0.92132 1.25712 0.97980 0.99943 0.95350 1.70061 1.23376 1.13634 1.50258 0.85490 0.79822 0.78680 0.77563 1.19068 1.20965 1.20643 1.21968 0.94845 0.97845 0.92238 1.19279 0.96451 0.96661 0.93190 1.29326 0.92957 0.92759 0.92338 1.81143 1.11840 1.12132 1.11324 1.68132 1.09781 1.31995 1.15246 0.88537 0.91055 0.87300 0.79913 0.88444 0.87495 0.91072 0.89429 0.93325 1.01195 0.94913 0.92887 0.95003 0.90036 0.85487 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.22 71.23 0.73 -0.93 16 2 C 0.16 3.90 6.82 42.57 0.29 4.19 16 3 C -0.23 -4.45 9.54 22.44 0.21 -4.23 16 4 C 0.16 3.67 6.82 42.57 0.29 3.96 16 5 C -0.10 -1.49 10.22 71.24 0.73 -0.76 16 6 N -0.54 -16.89 8.80 -176.02 -1.55 -18.44 16 7 C 0.33 11.61 6.48 138.75 0.90 12.50 16 8 C 0.14 5.29 5.23 85.56 0.45 5.74 16 9 N -0.52 -21.29 4.37 -905.34 -3.96 -25.25 16 10 C 0.20 9.94 4.59 85.56 0.39 10.33 16 11 C -0.51 -27.40 8.61 25.60 0.22 -27.18 16 12 H 0.06 3.29 7.66 -2.91 -0.02 3.27 16 13 C 0.01 0.44 5.46 84.65 0.46 0.91 16 14 N -0.93 -53.62 13.29 21.45 0.28 -53.34 16 15 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 C 0.06 2.08 4.78 86.30 0.41 2.50 16 20 C -0.02 -0.46 5.77 28.79 0.17 -0.30 16 21 C 0.24 7.52 15.43 89.45 1.38 8.90 16 22 N -0.49 -16.84 18.53 20.00 0.37 -16.47 16 23 N -0.54 -18.08 10.27 -176.02 -1.81 -19.89 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.11 1.06 8.10 -2.38 -0.02 1.04 16 27 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 0.96 8.10 -2.38 -0.02 0.94 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 3.76 7.32 -2.39 -0.02 3.75 16 32 H 0.05 1.87 8.12 -2.38 -0.02 1.85 16 33 H -0.03 -1.58 8.00 -2.39 -0.02 -1.60 16 34 H 0.03 1.65 6.24 -2.39 -0.01 1.63 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.54 16 36 H 0.03 1.12 8.05 -2.39 -0.02 1.10 16 37 H 0.08 2.73 5.81 -2.39 -0.01 2.72 16 38 H 0.13 3.43 8.14 -2.39 -0.02 3.42 16 39 H 0.11 3.58 6.52 -2.39 -0.02 3.57 16 Total: -1.00 -67.99 337.09 3.05 -64.94 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.05 Total: 7.46 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.63 Total: 15.65 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.66 Total: -133.39 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -67.99 3.05 -64.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248977286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.967 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds