Wall clock time and date at job start Mon Mar 30 2020 02:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47037 * 269.99960 * 3 2 1 5 5 H 1.48499 * 109.46990 * 30.00416 * 3 2 1 6 6 H 1.48503 * 109.46839 * 150.00364 * 3 2 1 7 7 C 1.37879 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99907 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47115 * 179.97438 * 11 10 9 13 13 C 1.38288 * 119.97323 * 270.02335 * 12 11 10 14 14 C 1.38241 * 120.11024 * 180.02562 * 13 12 11 15 15 C 1.38166 * 120.05672 * 359.68220 * 14 13 12 16 16 C 1.38709 * 119.94305 * 0.57084 * 15 14 13 17 17 O 1.35904 * 120.05613 * 179.72198 * 16 15 14 18 18 C 1.42901 * 116.99735 * 5.19135 * 17 16 15 19 19 C 1.54891 * 110.48386 * 156.18130 * 18 17 16 20 20 C 1.54885 * 102.74862 * 156.61893 * 19 18 17 21 21 C 1.54269 * 104.19537 * 322.05639 * 20 19 18 22 22 C 1.53869 * 106.59671 * 23.61295 * 21 20 19 23 23 C 1.38126 * 119.97290 * 90.00123 * 12 11 10 24 24 H 0.96993 * 119.99962 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47166 * 60.00243 * 9 7 2 26 26 H 1.08998 * 109.47331 * 299.99942 * 9 7 2 27 27 H 1.08997 * 109.46870 * 60.00120 * 10 9 7 28 28 H 1.08998 * 109.47033 * 300.00182 * 10 9 7 29 29 H 1.09007 * 109.47223 * 60.00245 * 11 10 9 30 30 H 1.08996 * 109.47560 * 300.00444 * 11 10 9 31 31 H 1.08003 * 119.94392 * 0.02562 * 13 12 11 32 32 H 1.08005 * 119.97120 * 179.97438 * 14 13 12 33 33 H 1.08000 * 120.02861 * 180.29953 * 15 14 13 34 34 H 1.09000 * 110.54212 * 33.57254 * 18 17 16 35 35 H 1.08998 * 110.75591 * 274.93350 * 19 18 17 36 36 H 1.09002 * 110.75844 * 38.30483 * 19 18 17 37 37 H 1.09002 * 110.48925 * 80.73572 * 20 19 18 38 38 H 1.08999 * 110.48841 * 203.37977 * 20 19 18 39 39 H 1.08996 * 110.03168 * 264.32477 * 21 20 19 40 40 H 1.09008 * 110.07150 * 142.91480 * 21 20 19 41 41 H 1.09003 * 110.03018 * 240.71304 * 22 21 20 42 42 H 1.09004 * 110.07772 * 119.30784 * 22 21 20 43 43 H 1.08002 * 120.02460 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 6 6.0540 -4.0573 -0.0002 13 6 6.2838 -4.7082 1.1981 14 6 6.7451 -6.0114 1.2021 15 6 6.9715 -6.6690 0.0083 16 6 6.7468 -6.0165 -1.1950 17 8 6.9741 -6.6593 -2.3707 18 6 7.3339 -8.0403 -2.2959 19 6 6.9833 -8.7642 -3.6196 20 6 7.9400 -9.9821 -3.6070 21 6 9.2495 -9.4283 -3.0083 22 6 8.8641 -8.1938 -2.1747 23 6 6.2841 -4.7085 -1.1964 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6580 -3.1505 -0.8907 28 1 3.6586 -3.1502 0.8892 29 1 5.9149 -2.1226 0.8891 30 1 5.9150 -2.1227 -0.8908 31 1 6.1025 -4.1976 2.1324 32 1 6.9242 -6.5174 2.1393 33 1 7.3273 -7.6887 0.0119 34 1 6.8344 -8.5207 -1.4546 35 1 5.9431 -9.0900 -3.6179 36 1 7.1867 -8.1221 -4.4767 37 1 7.5385 -10.7762 -2.9773 38 1 8.1079 -10.3459 -4.6206 39 1 9.9331 -9.1410 -3.8072 40 1 9.7159 -10.1790 -2.3701 41 1 9.3607 -7.3071 -2.5691 42 1 9.1428 -8.3446 -1.1317 43 1 6.1045 -4.1997 -2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:20 Heat of formation + Delta-G solvation = -47.353999 kcal Electronic energy + Delta-G solvation = -20178.281417 eV Core-core repulsion = 17187.180136 eV Total energy + Delta-G solvation = -2991.101281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.41705 -38.50925 -36.54634 -34.61086 -32.49954 -30.74443 -30.07000 -29.11747 -28.04485 -27.05323 -23.62139 -22.46985 -21.76394 -20.83908 -20.21220 -19.85350 -17.97449 -16.61821 -16.46227 -16.08268 -15.85517 -14.94532 -14.63627 -14.40189 -14.02865 -13.74175 -13.67026 -13.27545 -12.93711 -12.70858 -12.57778 -12.37459 -11.80930 -11.64117 -11.61424 -11.51407 -11.39704 -11.20899 -10.97641 -10.87398 -10.72668 -10.65467 -10.61495 -9.86572 -9.67423 -9.61803 -9.14760 -8.57871 -8.49642 -8.07036 -6.00089 -3.97694 1.44995 1.56543 3.10219 3.33846 3.40875 3.44922 3.87304 4.14889 4.20588 4.48990 4.49571 4.77351 4.88375 4.96838 5.04864 5.07718 5.13174 5.22523 5.22973 5.33845 5.42212 5.47407 5.49426 5.51870 5.63040 5.66840 5.74863 5.83514 5.88468 5.91840 5.98406 6.10876 6.29792 6.40464 6.49303 6.55214 6.73101 6.85173 6.92404 6.98690 7.37006 7.48556 7.49673 7.84384 8.59275 9.05561 9.62598 11.13564 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032176 B = 0.002892 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.999287 B = 9680.545075 C =10044.290053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.095 4.095 11 C -0.088 4.088 12 C -0.027 4.027 13 C -0.156 4.156 14 C -0.081 4.081 15 C -0.222 4.222 16 C 0.129 3.871 17 O -0.308 6.308 18 C 0.078 3.922 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.148 4.148 23 C -0.151 4.151 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.884 -19.119 -3.555 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.027 4.027 13 C -0.174 4.174 14 C -0.099 4.099 15 C -0.241 4.241 16 C 0.084 3.916 17 O -0.222 6.222 18 C 0.021 3.979 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.186 4.186 23 C -0.170 4.170 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 19.724 -18.931 -3.753 27.595 hybrid contribution 0.361 0.716 0.212 0.830 sum 20.086 -18.214 -3.541 27.345 Atomic orbital electron populations 1.69923 1.06312 1.26808 1.51433 1.25053 0.94738 0.99194 0.94663 0.86763 0.80361 0.83589 0.78481 1.20326 1.21462 1.18973 1.21175 0.89622 0.94432 1.50459 0.91089 1.19602 0.97074 0.92323 0.96214 1.21446 0.90555 0.99801 1.01453 1.20855 0.98302 0.90764 1.02628 1.19940 0.94112 0.96679 0.91955 1.21005 1.03198 0.95257 0.97955 1.20874 0.97327 0.94562 0.97113 1.21134 1.09778 1.00821 0.92369 1.18960 0.95694 0.92358 0.84540 1.86124 1.83627 1.23994 1.28418 1.23347 0.94882 0.80190 0.99438 1.22555 1.00044 0.96296 0.96775 1.22311 0.95110 0.97181 1.01490 1.22062 0.97691 0.96874 0.99344 1.22689 0.95720 0.99394 1.00822 1.20352 1.04902 0.92768 0.98977 0.92807 0.96626 0.97045 0.92643 0.92631 0.91124 0.91214 0.85884 0.86173 0.85974 0.90249 0.90571 0.90013 0.91257 0.90882 0.91424 0.91564 0.90438 0.91296 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.09 -1.93 5.14 -26.73 -0.14 -2.07 16 11 C -0.09 -1.45 5.34 -27.89 -0.15 -1.60 16 12 C -0.03 -0.41 5.13 -104.65 -0.54 -0.95 16 13 C -0.16 -2.18 9.70 -39.56 -0.38 -2.56 16 14 C -0.08 -1.00 10.04 -39.61 -0.40 -1.39 16 15 C -0.22 -2.75 8.87 -39.43 -0.35 -3.10 16 16 C 0.13 1.81 6.66 -39.22 -0.26 1.55 16 17 O -0.31 -4.03 9.85 -19.44 -0.19 -4.22 16 18 C 0.08 0.75 2.69 -25.07 -0.07 0.69 16 19 C -0.12 -0.97 6.62 -24.74 -0.16 -1.13 16 20 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 21 C -0.12 -0.78 6.80 -25.61 -0.17 -0.96 16 22 C -0.15 -1.22 6.28 -25.62 -0.16 -1.38 16 23 C -0.15 -2.30 9.64 -39.43 -0.38 -2.68 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.12 1.23 5.53 -52.49 -0.29 0.94 16 34 H 0.08 0.73 6.27 -51.93 -0.33 0.41 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.07 0.53 7.71 -51.93 -0.40 0.13 16 43 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -31.80 345.06 -10.04 -41.84 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.28 Total: -1.86 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -3.88 Total: -30.67 kcal Atomic # 7 Polarization: -28.48 SS G_CDS: 0.77 Total: -27.70 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.19 Total: -4.22 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.80 -10.04 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.512 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds