Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47037 * 269.99960 * 3 2 1 5 5 H 1.48499 * 109.46990 * 30.00416 * 3 2 1 6 6 H 1.48503 * 109.46839 * 150.00364 * 3 2 1 7 7 C 1.37879 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99907 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47115 * 179.97438 * 11 10 9 13 13 C 1.38288 * 119.97323 * 270.02335 * 12 11 10 14 14 C 1.38241 * 120.11024 * 180.02562 * 13 12 11 15 15 C 1.38166 * 120.05672 * 359.68220 * 14 13 12 16 16 C 1.38709 * 119.94305 * 0.57084 * 15 14 13 17 17 O 1.35904 * 120.05613 * 179.72198 * 16 15 14 18 18 C 1.42901 * 116.99735 * 5.19135 * 17 16 15 19 19 C 1.54891 * 110.48386 * 156.18130 * 18 17 16 20 20 C 1.54885 * 102.74862 * 156.61893 * 19 18 17 21 21 C 1.54269 * 104.19537 * 322.05639 * 20 19 18 22 22 C 1.53869 * 106.59671 * 23.61295 * 21 20 19 23 23 C 1.38126 * 119.97290 * 90.00123 * 12 11 10 24 24 H 0.96993 * 119.99962 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47166 * 60.00243 * 9 7 2 26 26 H 1.08998 * 109.47331 * 299.99942 * 9 7 2 27 27 H 1.08997 * 109.46870 * 60.00120 * 10 9 7 28 28 H 1.08998 * 109.47033 * 300.00182 * 10 9 7 29 29 H 1.09007 * 109.47223 * 60.00245 * 11 10 9 30 30 H 1.08996 * 109.47560 * 300.00444 * 11 10 9 31 31 H 1.08003 * 119.94392 * 0.02562 * 13 12 11 32 32 H 1.08005 * 119.97120 * 179.97438 * 14 13 12 33 33 H 1.08000 * 120.02861 * 180.29953 * 15 14 13 34 34 H 1.09000 * 110.54212 * 33.57254 * 18 17 16 35 35 H 1.08998 * 110.75591 * 274.93350 * 19 18 17 36 36 H 1.09002 * 110.75844 * 38.30483 * 19 18 17 37 37 H 1.09002 * 110.48925 * 80.73572 * 20 19 18 38 38 H 1.08999 * 110.48841 * 203.37977 * 20 19 18 39 39 H 1.08996 * 110.03168 * 264.32477 * 21 20 19 40 40 H 1.09008 * 110.07150 * 142.91480 * 21 20 19 41 41 H 1.09003 * 110.03018 * 240.71304 * 22 21 20 42 42 H 1.09004 * 110.07772 * 119.30784 * 22 21 20 43 43 H 1.08002 * 120.02460 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 6 6.0540 -4.0573 -0.0002 13 6 6.2838 -4.7082 1.1981 14 6 6.7451 -6.0114 1.2021 15 6 6.9715 -6.6690 0.0083 16 6 6.7468 -6.0165 -1.1950 17 8 6.9741 -6.6593 -2.3707 18 6 7.3339 -8.0403 -2.2959 19 6 6.9833 -8.7642 -3.6196 20 6 7.9400 -9.9821 -3.6070 21 6 9.2495 -9.4283 -3.0083 22 6 8.8641 -8.1938 -2.1747 23 6 6.2841 -4.7085 -1.1964 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6580 -3.1505 -0.8907 28 1 3.6586 -3.1502 0.8892 29 1 5.9149 -2.1226 0.8891 30 1 5.9150 -2.1227 -0.8908 31 1 6.1025 -4.1976 2.1324 32 1 6.9242 -6.5174 2.1393 33 1 7.3273 -7.6887 0.0119 34 1 6.8344 -8.5207 -1.4546 35 1 5.9431 -9.0900 -3.6179 36 1 7.1867 -8.1221 -4.4767 37 1 7.5385 -10.7762 -2.9773 38 1 8.1079 -10.3459 -4.6206 39 1 9.9331 -9.1410 -3.8072 40 1 9.7159 -10.1790 -2.3701 41 1 9.3607 -7.3071 -2.5691 42 1 9.1428 -8.3446 -1.1317 43 1 6.1045 -4.1997 -2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -63.277011 kcal Electronic energy + Delta-G solvation = -20178.971891 eV Core-core repulsion = 17187.180136 eV Total energy + Delta-G solvation = -2991.791755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35006 -39.42591 -37.39150 -36.22854 -34.43915 -32.20493 -31.17700 -29.74467 -28.86482 -28.55375 -25.25862 -23.49255 -22.87281 -21.87880 -21.40992 -20.84244 -19.10322 -18.65588 -17.34071 -16.94147 -16.77890 -16.34882 -15.93682 -15.56971 -15.19356 -15.04935 -14.80309 -14.39540 -14.23687 -14.08698 -13.78741 -13.34398 -13.19451 -13.10689 -12.65490 -12.60725 -12.35479 -12.17366 -12.11509 -12.05668 -11.77354 -11.62495 -11.49980 -11.41990 -11.36435 -11.33765 -11.24281 -10.75921 -9.71713 -9.10186 -8.29059 -6.33536 0.38501 0.51715 1.36872 1.38881 1.51466 2.23057 2.37281 2.81720 3.06186 3.51644 3.59993 3.82657 3.89521 3.93063 4.08825 4.24133 4.26608 4.42235 4.45277 4.47451 4.49859 4.51310 4.53773 4.67200 4.70437 4.75206 4.86867 4.98255 5.01959 5.07362 5.10810 5.11248 5.15680 5.19725 5.24190 5.37913 5.41060 5.50466 5.54327 5.58203 5.67281 5.77784 5.90024 6.29561 6.53513 6.74580 7.30992 8.88129 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032176 B = 0.002892 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.999287 B = 9680.545075 C =10044.290053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.012 4.012 10 C -0.086 4.086 11 C -0.077 4.077 12 C -0.043 4.043 13 C -0.166 4.166 14 C -0.077 4.077 15 C -0.218 4.218 16 C 0.121 3.879 17 O -0.325 6.325 18 C 0.067 3.933 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.146 4.146 23 C -0.173 4.173 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.503 -19.815 -2.923 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.049 4.049 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.043 4.043 13 C -0.185 4.185 14 C -0.095 4.095 15 C -0.236 4.236 16 C 0.076 3.924 17 O -0.240 6.240 18 C 0.011 3.989 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.184 4.184 23 C -0.192 4.192 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.362 -19.652 -3.124 29.933 hybrid contribution -0.517 0.787 -0.014 0.942 sum 21.845 -18.865 -3.139 29.033 Atomic orbital electron populations 1.70085 1.08430 1.28205 1.52797 1.26107 0.95692 1.03805 0.94048 0.85582 0.79594 0.77761 0.79254 1.19185 1.20922 1.16545 1.21544 0.92426 0.92970 1.50370 0.95520 1.19562 0.93625 0.94983 0.96768 1.21268 0.93656 0.97088 1.00357 1.20675 0.94976 0.92205 1.03560 1.19856 0.95558 0.96207 0.92725 1.21231 1.03302 0.96154 0.97767 1.21248 0.95858 0.93948 0.98428 1.21446 1.08645 1.01824 0.91710 1.19083 0.95619 0.92203 0.85532 1.86110 1.83684 1.25781 1.28419 1.23672 0.96058 0.78636 1.00508 1.22607 1.00760 0.96911 0.95660 1.22315 0.94315 0.96390 1.02457 1.22072 0.97887 0.96325 0.99409 1.22671 0.94360 0.99700 1.01650 1.20422 1.06171 0.93797 0.98779 0.92499 0.95661 0.96187 0.94161 0.93443 0.89770 0.90681 0.84812 0.83004 0.83505 0.89611 0.90511 0.90979 0.90164 0.89793 0.91178 0.90073 0.91927 0.90471 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 3 Si 0.96 45.13 27.47 68.60 1.88 47.01 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.54 -32.13 9.66 25.60 0.25 -31.88 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.09 -3.53 5.14 30.59 0.16 -3.37 16 11 C -0.08 -2.47 5.34 29.85 0.16 -2.31 16 12 C -0.04 -1.31 5.13 -19.88 -0.10 -1.41 16 13 C -0.17 -4.38 9.70 22.28 0.22 -4.16 16 14 C -0.08 -1.71 10.04 22.25 0.22 -1.48 16 15 C -0.22 -4.95 8.87 22.37 0.20 -4.75 16 16 C 0.12 3.31 6.66 22.50 0.15 3.46 16 17 O -0.33 -8.48 9.85 -92.47 -0.91 -9.39 16 18 C 0.07 1.22 2.69 31.67 0.09 1.31 16 19 C -0.12 -1.86 6.62 31.88 0.21 -1.65 16 20 C -0.12 -1.19 6.83 31.67 0.22 -0.97 16 21 C -0.12 -1.26 6.80 31.32 0.21 -1.04 16 22 C -0.15 -2.17 6.28 31.32 0.20 -1.97 16 23 C -0.17 -5.29 9.64 22.36 0.22 -5.08 16 24 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 25 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 26 H 0.02 0.92 7.57 -2.39 -0.02 0.91 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 2.46 8.08 -2.38 -0.02 2.44 16 30 H 0.07 2.30 8.08 -2.39 -0.02 2.29 16 31 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 2.52 5.53 -2.91 -0.02 2.51 16 34 H 0.09 1.42 6.27 -2.39 -0.01 1.41 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 42 H 0.08 1.00 7.71 -2.38 -0.02 0.98 16 43 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -70.26 345.06 5.15 -65.11 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.90 Total: 13.88 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 2.97 Total: -55.32 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.30 Total: -61.29 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.91 Total: -9.39 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -70.26 5.15 -65.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.835 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds