Wall clock time and date at job start Mon Mar 30 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00031 * 3 2 1 5 5 H 1.48500 * 109.46784 * 29.99625 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99895 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 C 1.38887 * 120.33363 * 90.00582 * 12 11 10 14 14 C 1.38299 * 118.50238 * 179.97438 * 13 12 11 15 15 C 1.39136 * 119.09714 * 359.97438 * 14 13 12 16 16 N 1.39002 * 119.70106 * 180.02562 * 15 14 13 17 17 C 1.46851 * 111.00254 * 304.21194 * 16 15 14 18 18 C 1.53036 * 109.52225 * 174.16251 * 17 16 15 19 19 C 1.53118 * 109.28135 * 59.18061 * 18 17 16 20 20 C 1.53124 * 109.16039 * 302.34430 * 19 18 17 21 21 C 1.46852 * 110.99939 * 180.02562 * 16 15 14 22 22 N 1.32394 * 120.59331 * 0.02813 * 15 14 13 23 23 C 1.31974 * 121.61579 * 359.68449 * 22 15 14 24 24 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 27 27 H 1.09004 * 109.46785 * 60.00162 * 10 9 7 28 28 H 1.09004 * 109.47694 * 300.00261 * 10 9 7 29 29 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 30 30 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 31 31 H 1.08000 * 120.74302 * 359.94766 * 13 12 11 32 32 H 1.08003 * 120.44613 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.45952 * 294.17721 * 17 16 15 34 34 H 1.09003 * 109.45701 * 54.14685 * 17 16 15 35 35 H 1.08996 * 109.50386 * 299.23996 * 18 17 16 36 36 H 1.09004 * 109.50301 * 179.12097 * 18 17 16 37 37 H 1.08999 * 109.52874 * 182.43718 * 19 18 17 38 38 H 1.09006 * 109.57314 * 62.27902 * 19 18 17 39 39 H 1.08991 * 109.50650 * 297.71479 * 20 19 18 40 40 H 1.08996 * 109.53687 * 177.60761 * 20 19 18 41 41 H 1.09003 * 109.45897 * 305.85952 * 21 16 15 42 42 H 1.09001 * 109.45971 * 65.82985 * 21 16 15 43 43 H 1.08009 * 119.57093 * 180.29228 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0018 13 6 2.9151 -6.6652 1.2008 14 6 3.8130 -7.7162 1.1572 15 6 4.2266 -8.2019 -0.0793 16 7 5.1282 -9.2582 -0.1377 17 6 6.3533 -8.9465 0.6095 18 6 7.2580 -10.1802 0.6460 19 6 7.6036 -10.5964 -0.7864 20 6 6.3087 -10.8685 -1.5570 21 6 5.4319 -9.6145 -1.5297 22 7 3.7690 -7.6670 -1.2006 23 6 2.9076 -6.6673 -1.1891 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6045 -0.8894 29 1 0.8533 -5.0451 -0.8887 30 1 0.8537 -5.0446 0.8914 31 1 2.5762 -6.2672 2.1459 32 1 4.1880 -8.1539 2.0706 33 1 6.8780 -8.1257 0.1205 34 1 6.0937 -8.6561 1.6276 35 1 6.7391 -10.9973 1.1471 36 1 8.1742 -9.9438 1.1873 37 1 8.2124 -11.5003 -0.7664 38 1 8.1572 -9.7951 -1.2760 39 1 5.7748 -11.6964 -1.0905 40 1 6.5459 -11.1242 -2.5896 41 1 4.5029 -9.8093 -2.0656 42 1 5.9612 -8.7905 -2.0082 43 1 2.5523 -6.2591 -2.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:12 Heat of formation + Delta-G solvation = 12.640580 kcal Electronic energy + Delta-G solvation = -20354.400817 eV Core-core repulsion = 17398.193847 eV Total energy + Delta-G solvation = -2956.206970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73207 -38.61911 -35.25144 -33.68935 -32.66805 -31.95819 -30.97731 -29.70797 -26.73968 -24.77902 -24.27148 -23.13664 -22.40010 -21.24028 -20.08365 -19.94395 -17.69040 -16.52928 -16.30237 -15.27787 -15.16392 -14.83304 -14.51976 -14.44778 -14.38539 -13.81459 -13.60129 -13.35315 -13.27326 -12.97023 -12.40239 -12.36914 -12.14448 -11.61516 -11.50061 -11.24655 -11.12490 -10.81647 -10.77260 -10.74631 -10.71063 -10.49957 -9.75091 -9.73301 -9.66795 -9.43436 -9.20387 -9.02353 -8.34285 -7.89324 -5.99472 -4.01664 1.26909 1.43757 3.32038 3.38176 3.39352 3.41825 3.94170 4.41082 4.46532 4.54620 4.61846 4.65802 4.94280 5.05052 5.09366 5.15992 5.20060 5.24517 5.31615 5.36246 5.36520 5.47405 5.58962 5.62338 5.65636 5.70675 5.82250 5.93727 5.96818 6.04092 6.07278 6.13352 6.30119 6.41686 6.62344 6.67567 6.82063 6.88499 7.11968 7.20312 7.68448 7.83033 8.00926 8.10302 8.43896 9.05561 9.62351 11.11799 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.002856 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.398913 B = 9800.150771 C =10068.650115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.077 4.077 12 C -0.139 4.139 13 C -0.056 4.056 14 C -0.183 4.183 15 C 0.292 3.708 16 N -0.476 5.476 17 C 0.058 3.942 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.121 4.121 21 C 0.068 3.932 22 N -0.518 5.518 23 C 0.122 3.878 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.024 -21.936 0.572 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.115 4.115 12 C -0.142 4.142 13 C -0.082 4.082 14 C -0.206 4.206 15 C 0.060 3.940 16 N -0.195 5.195 17 C -0.068 4.068 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.059 4.059 22 N -0.232 5.232 23 C -0.035 4.035 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.007 -22.610 -0.004 25.601 hybrid contribution 0.395 1.930 0.474 2.026 sum 12.402 -20.680 0.470 24.119 Atomic orbital electron populations 1.69965 1.06033 1.26563 1.50982 1.25026 0.94847 0.99229 0.95385 0.86612 0.79858 0.83538 0.78109 1.20668 1.21216 1.19911 1.21267 0.93017 0.91149 1.50408 0.92789 1.19119 0.93995 0.91291 0.97253 1.21635 0.98982 0.93008 1.00416 1.20690 0.95807 0.92303 1.02730 1.21066 1.00526 0.98934 0.93642 1.21406 0.94296 0.93838 0.98630 1.21478 1.01917 0.99752 0.97443 1.19720 0.95057 0.89645 0.89547 1.59160 1.12295 1.32505 1.15511 1.22259 0.88570 0.97376 0.98593 1.21612 0.98806 0.97733 0.97324 1.21615 0.97462 1.01386 0.95691 1.21676 0.95745 0.98014 1.00439 1.21944 1.00303 0.96663 0.87029 1.67562 1.13843 1.11743 1.30047 1.22445 0.92167 0.90926 0.97975 0.93020 0.96540 0.96574 0.93453 0.93367 0.91146 0.91270 0.84716 0.85138 0.93801 0.89920 0.90862 0.91041 0.91663 0.92088 0.91181 0.91202 0.89647 0.93492 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -2.09 5.13 -26.73 -0.14 -2.23 16 11 C -0.08 -1.28 5.37 -27.88 -0.15 -1.43 16 12 C -0.14 -2.09 5.15 -104.46 -0.54 -2.63 16 13 C -0.06 -0.76 9.85 -39.32 -0.39 -1.15 16 14 C -0.18 -2.36 9.18 -39.23 -0.36 -2.72 16 15 C 0.29 4.03 6.41 -155.03 -0.99 3.04 16 16 N -0.48 -5.58 4.68 -173.22 -0.81 -6.39 16 17 C 0.06 0.56 5.25 -3.83 -0.02 0.54 16 18 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 19 C -0.12 -0.90 6.00 -26.61 -0.16 -1.06 16 20 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 21 C 0.07 0.74 4.65 -3.83 -0.02 0.72 16 22 N -0.52 -7.81 8.68 -12.44 -0.11 -7.92 16 23 C 0.12 1.82 10.85 -17.57 -0.19 1.63 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.38 7.14 -52.48 -0.37 1.00 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.73 6.67 -51.93 -0.35 0.39 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 42 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 43 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.03 344.61 -11.26 -42.29 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.42 Total: -2.95 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -3.83 Total: -20.70 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.18 Total: -40.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.03 -11.26 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.931 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds