Wall clock time and date at job start Mon Mar 30 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00031 * 3 2 1 5 5 H 1.48500 * 109.46784 * 29.99625 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99895 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 C 1.38887 * 120.33363 * 90.00582 * 12 11 10 14 14 C 1.38299 * 118.50238 * 179.97438 * 13 12 11 15 15 C 1.39136 * 119.09714 * 359.97438 * 14 13 12 16 16 N 1.39002 * 119.70106 * 180.02562 * 15 14 13 17 17 C 1.46851 * 111.00254 * 304.21194 * 16 15 14 18 18 C 1.53036 * 109.52225 * 174.16251 * 17 16 15 19 19 C 1.53118 * 109.28135 * 59.18061 * 18 17 16 20 20 C 1.53124 * 109.16039 * 302.34430 * 19 18 17 21 21 C 1.46852 * 110.99939 * 180.02562 * 16 15 14 22 22 N 1.32394 * 120.59331 * 0.02813 * 15 14 13 23 23 C 1.31974 * 121.61579 * 359.68449 * 22 15 14 24 24 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 27 27 H 1.09004 * 109.46785 * 60.00162 * 10 9 7 28 28 H 1.09004 * 109.47694 * 300.00261 * 10 9 7 29 29 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 30 30 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 31 31 H 1.08000 * 120.74302 * 359.94766 * 13 12 11 32 32 H 1.08003 * 120.44613 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.45952 * 294.17721 * 17 16 15 34 34 H 1.09003 * 109.45701 * 54.14685 * 17 16 15 35 35 H 1.08996 * 109.50386 * 299.23996 * 18 17 16 36 36 H 1.09004 * 109.50301 * 179.12097 * 18 17 16 37 37 H 1.08999 * 109.52874 * 182.43718 * 19 18 17 38 38 H 1.09006 * 109.57314 * 62.27902 * 19 18 17 39 39 H 1.08991 * 109.50650 * 297.71479 * 20 19 18 40 40 H 1.08996 * 109.53687 * 177.60761 * 20 19 18 41 41 H 1.09003 * 109.45897 * 305.85952 * 21 16 15 42 42 H 1.09001 * 109.45971 * 65.82985 * 21 16 15 43 43 H 1.08009 * 119.57093 * 180.29228 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0018 13 6 2.9151 -6.6652 1.2008 14 6 3.8130 -7.7162 1.1572 15 6 4.2266 -8.2019 -0.0793 16 7 5.1282 -9.2582 -0.1377 17 6 6.3533 -8.9465 0.6095 18 6 7.2580 -10.1802 0.6460 19 6 7.6036 -10.5964 -0.7864 20 6 6.3087 -10.8685 -1.5570 21 6 5.4319 -9.6145 -1.5297 22 7 3.7690 -7.6670 -1.2006 23 6 2.9076 -6.6673 -1.1891 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6045 -0.8894 29 1 0.8533 -5.0451 -0.8887 30 1 0.8537 -5.0446 0.8914 31 1 2.5762 -6.2672 2.1459 32 1 4.1880 -8.1539 2.0706 33 1 6.8780 -8.1257 0.1205 34 1 6.0937 -8.6561 1.6276 35 1 6.7391 -10.9973 1.1471 36 1 8.1742 -9.9438 1.1873 37 1 8.2124 -11.5003 -0.7664 38 1 8.1572 -9.7951 -1.2760 39 1 5.7748 -11.6964 -1.0905 40 1 6.5459 -11.1242 -2.5896 41 1 4.5029 -9.8093 -2.0656 42 1 5.9612 -8.7905 -2.0082 43 1 2.5523 -6.2591 -2.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:11 Heat of formation + Delta-G solvation = -3.177914 kcal Electronic energy + Delta-G solvation = -20355.086758 eV Core-core repulsion = 17398.193847 eV Total energy + Delta-G solvation = -2956.892911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73796 -39.52273 -36.70717 -35.10629 -34.02861 -33.27938 -31.77867 -31.14334 -28.30376 -26.00963 -25.27874 -24.49484 -23.27721 -22.57190 -21.66572 -20.69664 -18.65266 -18.43746 -17.61727 -16.60006 -16.17665 -16.10137 -15.78056 -15.47931 -15.28140 -15.14479 -14.53732 -14.52132 -14.24941 -14.07598 -13.93672 -13.75995 -13.22441 -13.10503 -12.91710 -12.59921 -12.54869 -12.32988 -12.18758 -11.73163 -11.52006 -11.43089 -11.42098 -11.33025 -11.21926 -10.71059 -10.67296 -10.54840 -10.35596 -8.96028 -8.19910 -6.30842 0.17616 0.35601 1.39268 1.40352 1.51509 2.40381 2.47045 2.86879 3.12891 3.48739 3.82090 3.91456 3.93555 3.97704 4.01625 4.13054 4.21887 4.28713 4.37682 4.43047 4.54999 4.57235 4.62134 4.74418 4.77350 4.84593 4.88581 4.93245 5.04043 5.06869 5.10390 5.20019 5.24128 5.24873 5.26822 5.43690 5.44599 5.53101 5.59164 5.77806 5.81784 5.87454 6.18866 6.26633 6.86285 7.02344 7.38190 8.91549 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.002856 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.398913 B = 9800.150771 C =10068.650115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.088 4.088 11 C -0.064 4.064 12 C -0.153 4.153 13 C -0.056 4.056 14 C -0.181 4.181 15 C 0.284 3.716 16 N -0.477 5.477 17 C 0.055 3.945 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.115 4.115 21 C 0.069 3.931 22 N -0.537 5.537 23 C 0.113 3.887 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.005 1.005 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.937 -22.862 1.421 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.126 4.126 11 C -0.102 4.102 12 C -0.156 4.156 13 C -0.082 4.082 14 C -0.203 4.203 15 C 0.052 3.948 16 N -0.196 5.196 17 C -0.071 4.071 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.058 4.058 22 N -0.251 5.251 23 C -0.044 4.044 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.170 0.830 32 H 0.175 0.825 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.935 -23.554 0.844 27.380 hybrid contribution -0.193 2.146 0.207 2.164 sum 13.742 -21.408 1.051 25.461 Atomic orbital electron populations 1.70089 1.07702 1.27747 1.51734 1.25963 0.95782 1.03266 0.94799 0.85486 0.78697 0.78624 0.78491 1.19831 1.20578 1.18864 1.21715 0.93419 0.92636 1.50446 0.92581 1.19034 0.94430 0.92850 0.95062 1.21396 0.97824 0.93125 1.00213 1.20461 0.95784 0.90922 1.03078 1.20885 1.01123 0.99109 0.94467 1.21648 0.93983 0.93797 0.98769 1.21732 1.01287 0.99247 0.98083 1.20148 0.95168 0.89744 0.89708 1.59260 1.12942 1.31383 1.15970 1.22400 0.87895 0.98295 0.98494 1.21622 0.99029 0.96642 0.97685 1.21630 0.96957 1.02130 0.95345 1.21656 0.95746 0.96398 1.01508 1.21931 0.99888 0.97494 0.86494 1.67594 1.14363 1.12162 1.30979 1.22581 0.92306 0.91143 0.98354 0.92750 0.98803 0.98633 0.93377 0.93694 0.91040 0.90797 0.83033 0.82545 0.94920 0.88989 0.90509 0.89221 0.89827 0.92436 0.91027 0.90074 0.91306 0.94952 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.62 5.13 30.59 0.16 -3.46 16 11 C -0.06 -2.13 5.37 29.85 0.16 -1.97 16 12 C -0.15 -4.53 5.15 -19.76 -0.10 -4.63 16 13 C -0.06 -1.45 9.85 22.44 0.22 -1.23 16 14 C -0.18 -4.34 9.18 22.50 0.21 -4.13 16 15 C 0.28 7.60 6.41 133.07 0.85 8.45 16 16 N -0.48 -10.62 4.68 -701.95 -3.29 -13.90 16 17 C 0.05 0.95 5.25 86.32 0.45 1.40 16 18 C -0.11 -1.37 6.09 30.65 0.19 -1.18 16 19 C -0.12 -1.49 6.00 30.67 0.18 -1.31 16 20 C -0.12 -1.70 6.09 30.65 0.19 -1.51 16 21 C 0.07 1.47 4.65 86.33 0.40 1.87 16 22 N -0.54 -16.14 8.68 -193.26 -1.68 -17.82 16 23 C 0.11 3.37 10.85 84.62 0.92 4.29 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 25 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 26 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 30 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.16 2.85 7.14 -2.91 -0.02 2.83 16 33 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 1.41 6.67 -2.39 -0.02 1.39 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.67 7.70 -2.39 -0.02 1.65 16 42 H 0.03 0.77 8.11 -2.39 -0.02 0.75 16 43 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -66.79 344.61 2.97 -63.82 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.95 Total: 10.76 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 4.67 Total: -32.75 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -4.68 Total: -88.50 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.79 2.97 -63.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.640 kcal (2) G-P(sol) polarization free energy of solvation -66.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds