Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47361 * 300.00215 * 3 2 1 6 6 H 1.48506 * 109.46926 * 60.00301 * 3 2 1 7 7 C 1.37881 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.50710 * 109.47040 * 179.97438 * 11 10 9 13 13 C 1.38290 * 119.92111 * 90.00207 * 12 11 10 14 14 C 1.38096 * 120.07046 * 180.02562 * 13 12 11 15 15 C 1.38905 * 119.92855 * 359.97438 * 14 13 12 16 16 N 1.39676 * 120.07534 * 179.97438 * 15 14 13 17 17 C 1.46963 * 110.99888 * 180.02562 * 16 15 14 18 18 C 1.53056 * 109.36215 * 183.18872 * 17 16 15 19 19 N 1.46953 * 109.36571 * 301.59782 * 18 17 16 20 20 C 1.46954 * 110.88290 * 59.31944 * 19 18 17 21 21 C 1.46956 * 111.00074 * 303.79804 * 16 15 14 22 22 C 1.38911 * 119.85009 * 0.25912 * 15 14 13 23 23 C 1.38097 * 119.92279 * 359.49173 * 22 15 14 24 24 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46956 * 60.00276 * 9 7 2 26 26 H 1.08998 * 109.47226 * 300.00479 * 9 7 2 27 27 H 1.08998 * 109.47793 * 60.00042 * 10 9 7 28 28 H 1.09007 * 109.47335 * 299.99974 * 10 9 7 29 29 H 1.09003 * 109.47248 * 59.99973 * 11 10 9 30 30 H 1.08995 * 109.47139 * 299.99767 * 11 10 9 31 31 H 1.07999 * 119.96410 * 0.04023 * 13 12 11 32 32 H 1.08004 * 120.03674 * 180.02562 * 14 13 12 33 33 H 1.08994 * 109.49116 * 63.21879 * 17 16 15 34 34 H 1.08998 * 109.48714 * 303.15102 * 17 16 15 35 35 H 1.08997 * 109.49056 * 61.56647 * 18 17 16 36 36 H 1.09004 * 109.48437 * 181.60556 * 18 17 16 37 37 H 1.00904 * 110.99828 * 295.45311 * 19 18 17 38 38 H 1.09002 * 109.48555 * 60.64731 * 20 19 18 39 39 H 1.08998 * 109.48990 * 180.71711 * 20 19 18 40 40 H 1.09004 * 109.48845 * 56.84874 * 21 16 15 41 41 H 1.09000 * 109.51032 * 296.79226 * 21 16 15 42 42 H 1.08004 * 120.03782 * 179.72099 * 22 15 14 43 43 H 1.08002 * 119.96423 * 180.25359 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 6 2.9078 -6.6576 1.1965 14 6 3.8056 -7.7069 1.1995 15 6 4.2580 -8.2354 -0.0028 16 7 5.1665 -9.2963 -0.0033 17 6 5.5090 -9.6956 -1.3756 18 6 6.4417 -10.9084 -1.3333 19 7 7.6502 -10.5673 -0.5699 20 6 7.3078 -10.1679 0.8022 21 6 6.3753 -8.9550 0.7595 22 6 3.8094 -7.7025 -1.2046 23 6 2.9076 -6.6566 -1.2005 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6044 0.8894 28 1 2.8720 -3.6044 -0.8906 29 1 0.8538 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 2.5552 -6.2466 2.1309 32 1 4.1551 -8.1167 2.1357 33 1 6.0094 -8.8695 -1.8806 34 1 4.5991 -9.9554 -1.9165 35 1 5.9315 -11.7430 -0.8525 36 1 6.7199 -11.1888 -2.3492 37 1 8.1800 -9.8454 -1.0351 38 1 6.8073 -10.9942 1.3072 39 1 8.2177 -9.9082 1.3432 40 1 6.0970 -8.6746 1.7755 41 1 6.8855 -8.1203 0.2788 42 1 4.1626 -8.1081 -2.1412 43 1 2.5553 -6.2444 -2.1345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = 16.793044 kcal Electronic energy + Delta-G solvation = -20333.955600 eV Core-core repulsion = 17377.928695 eV Total energy + Delta-G solvation = -2956.026905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55464 -38.43099 -35.41041 -33.89179 -32.17168 -31.84601 -30.51793 -29.58692 -26.89253 -25.20330 -24.36220 -23.16022 -21.94068 -21.35493 -20.42338 -19.88311 -17.72363 -16.33706 -15.88549 -15.82932 -15.23697 -15.14204 -14.70172 -14.53994 -14.36066 -14.19107 -13.59733 -13.35335 -13.29119 -12.79703 -12.46450 -12.33360 -11.97507 -11.70755 -11.64639 -11.60365 -11.26397 -11.22467 -10.90017 -10.70176 -10.60783 -10.44836 -9.72096 -9.65442 -9.28356 -9.04241 -8.86769 -8.80163 -8.33921 -7.71437 -5.98926 -4.00998 1.46331 1.51557 3.31028 3.38320 3.39087 3.42885 3.85033 3.92110 4.46900 4.57379 4.63112 4.72126 4.80486 4.86635 4.99589 5.04760 5.15634 5.22171 5.29959 5.36733 5.38358 5.51243 5.56386 5.58367 5.68210 5.76925 5.84198 6.11824 6.12659 6.23586 6.33114 6.50250 6.52017 6.62553 6.76400 6.86815 6.91755 6.93446 6.99604 7.14947 7.29276 7.70003 7.84928 8.01964 8.45064 9.06571 9.62946 11.12427 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032646 B = 0.002828 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.473834 B = 9898.908113 C =10181.548921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.083 4.083 12 C -0.084 4.084 13 C -0.096 4.096 14 C -0.135 4.135 15 C 0.088 3.912 16 N -0.484 5.484 17 C 0.012 3.988 18 C 0.058 3.942 19 N -0.687 5.687 20 C 0.058 3.942 21 C 0.018 3.982 22 C -0.167 4.167 23 C -0.095 4.095 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.340 0.660 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.141 -21.849 -0.824 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.121 4.121 12 C -0.085 4.085 13 C -0.114 4.114 14 C -0.155 4.155 15 C -0.008 4.008 16 N -0.201 5.201 17 C -0.117 4.117 18 C -0.072 4.072 19 N -0.315 5.315 20 C -0.072 4.072 21 C -0.110 4.110 22 C -0.187 4.187 23 C -0.113 4.113 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.157 0.843 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.992 -22.864 -0.416 25.821 hybrid contribution 0.236 2.551 -0.537 2.617 sum 12.227 -20.314 -0.953 23.729 Atomic orbital electron populations 1.69980 1.06036 1.26427 1.51138 1.25036 0.94851 0.99243 0.95425 0.86557 0.80134 0.83871 0.77578 1.19767 1.21019 1.21002 1.21313 0.93055 0.91147 1.50183 0.92733 1.19129 0.94034 0.91369 0.97199 1.21615 0.98931 0.93042 1.00357 1.20771 0.96098 0.92798 1.02404 1.20161 0.98525 0.97093 0.92699 1.20972 0.96753 0.95636 0.98067 1.20693 1.00175 0.98347 0.96317 1.18824 0.96905 0.91169 0.93922 1.59299 1.12162 1.34285 1.14322 1.23017 1.01043 0.98530 0.89097 1.22156 0.89331 0.96776 0.98916 1.60729 1.21059 1.46439 1.03296 1.22163 0.97980 0.96235 0.90820 1.23007 0.90329 0.98074 0.99542 1.21202 1.02032 0.98707 0.96796 1.20945 0.96776 0.95593 0.98028 0.93092 0.96615 0.96601 0.93423 0.93483 0.91529 0.91471 0.85806 0.86250 0.93797 0.89421 0.89858 0.89870 0.84315 0.89813 0.89832 0.89433 0.94022 0.86166 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.14 5.13 -26.73 -0.14 -2.28 16 11 C -0.08 -1.45 5.34 -27.88 -0.15 -1.60 16 12 C -0.08 -1.30 5.14 -104.58 -0.54 -1.84 16 13 C -0.10 -1.37 9.69 -39.61 -0.38 -1.75 16 14 C -0.14 -1.76 9.19 -39.39 -0.36 -2.12 16 15 C 0.09 1.12 5.64 -83.79 -0.47 0.64 16 16 N -0.48 -5.11 4.76 -170.95 -0.81 -5.92 16 17 C 0.01 0.10 4.29 -3.76 -0.02 0.09 16 18 C 0.06 0.42 6.72 -3.77 -0.03 0.40 16 19 N -0.69 -5.13 6.91 -113.63 -0.79 -5.92 16 20 C 0.06 0.43 6.72 -3.76 -0.03 0.40 16 21 C 0.02 0.16 5.37 -3.76 -0.02 0.14 16 22 C -0.17 -2.15 8.82 -39.38 -0.35 -2.49 16 23 C -0.09 -1.36 9.69 -39.62 -0.38 -1.74 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 30 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.12 1.34 7.19 -52.48 -0.38 0.96 16 33 H 0.04 0.39 7.57 -51.93 -0.39 0.00 16 34 H 0.09 0.76 7.18 -51.93 -0.37 0.38 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.34 2.25 8.89 -39.29 -0.35 1.90 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.77 6.82 -51.93 -0.35 0.42 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 1.31 5.81 -52.48 -0.31 1.01 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -31.19 342.17 -11.32 -42.51 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.18 Total: -0.67 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.41 Total: -25.52 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.86 Total: -38.35 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.19 -11.32 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.301 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds