Wall clock time and date at job start Mon Mar 30 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47361 * 300.00215 * 3 2 1 6 6 H 1.48506 * 109.46926 * 60.00301 * 3 2 1 7 7 C 1.37881 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.50710 * 109.47040 * 179.97438 * 11 10 9 13 13 C 1.38290 * 119.92111 * 90.00207 * 12 11 10 14 14 C 1.38096 * 120.07046 * 180.02562 * 13 12 11 15 15 C 1.38905 * 119.92855 * 359.97438 * 14 13 12 16 16 N 1.39676 * 120.07534 * 179.97438 * 15 14 13 17 17 C 1.46963 * 110.99888 * 180.02562 * 16 15 14 18 18 C 1.53056 * 109.36215 * 183.18872 * 17 16 15 19 19 N 1.46953 * 109.36571 * 301.59782 * 18 17 16 20 20 C 1.46954 * 110.88290 * 59.31944 * 19 18 17 21 21 C 1.46956 * 111.00074 * 303.79804 * 16 15 14 22 22 C 1.38911 * 119.85009 * 0.25912 * 15 14 13 23 23 C 1.38097 * 119.92279 * 359.49173 * 22 15 14 24 24 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46956 * 60.00276 * 9 7 2 26 26 H 1.08998 * 109.47226 * 300.00479 * 9 7 2 27 27 H 1.08998 * 109.47793 * 60.00042 * 10 9 7 28 28 H 1.09007 * 109.47335 * 299.99974 * 10 9 7 29 29 H 1.09003 * 109.47248 * 59.99973 * 11 10 9 30 30 H 1.08995 * 109.47139 * 299.99767 * 11 10 9 31 31 H 1.07999 * 119.96410 * 0.04023 * 13 12 11 32 32 H 1.08004 * 120.03674 * 180.02562 * 14 13 12 33 33 H 1.08994 * 109.49116 * 63.21879 * 17 16 15 34 34 H 1.08998 * 109.48714 * 303.15102 * 17 16 15 35 35 H 1.08997 * 109.49056 * 61.56647 * 18 17 16 36 36 H 1.09004 * 109.48437 * 181.60556 * 18 17 16 37 37 H 1.00904 * 110.99828 * 295.45311 * 19 18 17 38 38 H 1.09002 * 109.48555 * 60.64731 * 20 19 18 39 39 H 1.08998 * 109.48990 * 180.71711 * 20 19 18 40 40 H 1.09004 * 109.48845 * 56.84874 * 21 16 15 41 41 H 1.09000 * 109.51032 * 296.79226 * 21 16 15 42 42 H 1.08004 * 120.03782 * 179.72099 * 22 15 14 43 43 H 1.08002 * 119.96423 * 180.25359 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 6 2.9078 -6.6576 1.1965 14 6 3.8056 -7.7069 1.1995 15 6 4.2580 -8.2354 -0.0028 16 7 5.1665 -9.2963 -0.0033 17 6 5.5090 -9.6956 -1.3756 18 6 6.4417 -10.9084 -1.3333 19 7 7.6502 -10.5673 -0.5699 20 6 7.3078 -10.1679 0.8022 21 6 6.3753 -8.9550 0.7595 22 6 3.8094 -7.7025 -1.2046 23 6 2.9076 -6.6566 -1.2005 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6044 0.8894 28 1 2.8720 -3.6044 -0.8906 29 1 0.8538 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 2.5552 -6.2466 2.1309 32 1 4.1551 -8.1167 2.1357 33 1 6.0094 -8.8695 -1.8806 34 1 4.5991 -9.9554 -1.9165 35 1 5.9315 -11.7430 -0.8525 36 1 6.7199 -11.1888 -2.3492 37 1 8.1800 -9.8454 -1.0351 38 1 6.8073 -10.9942 1.3072 39 1 8.2177 -9.9082 1.3432 40 1 6.0970 -8.6746 1.7755 41 1 6.8855 -8.1203 0.2788 42 1 4.1626 -8.1081 -2.1412 43 1 2.5553 -6.2444 -2.1345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:59 Heat of formation + Delta-G solvation = -2.254974 kcal Electronic energy + Delta-G solvation = -20334.781584 eV Core-core repulsion = 17377.928695 eV Total energy + Delta-G solvation = -2956.852890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42042 -39.36097 -36.67798 -35.40355 -33.92988 -32.63276 -31.41886 -31.05030 -28.32024 -26.40791 -25.12959 -24.72012 -22.84399 -22.46390 -21.81005 -21.05607 -18.65681 -18.39963 -16.82162 -16.75837 -16.49537 -16.09063 -15.90839 -15.53602 -15.47419 -15.27453 -14.73531 -14.47725 -14.39042 -14.34623 -13.91693 -13.35904 -13.18866 -13.07365 -12.83460 -12.66083 -12.47149 -12.36323 -12.29822 -12.24279 -12.13439 -11.71432 -11.43402 -11.32492 -11.13817 -10.57378 -10.56297 -9.88379 -9.45547 -8.72410 -8.21320 -6.32827 0.39653 0.46355 1.38245 1.38486 1.52081 2.39443 2.55445 2.89093 3.11139 3.29352 3.80307 3.93064 3.97885 4.01909 4.05712 4.09006 4.16150 4.24839 4.37813 4.50061 4.54795 4.56837 4.58757 4.62763 4.71535 4.76632 4.89981 4.96475 4.99557 5.09121 5.15144 5.19247 5.23938 5.28565 5.43366 5.51742 5.69500 5.76478 5.84507 5.85439 5.89578 6.02533 6.24100 6.30263 6.39169 6.84255 7.36374 8.90408 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032646 B = 0.002828 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.473834 B = 9898.908113 C =10181.548921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.072 4.072 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.140 4.140 15 C 0.092 3.908 16 N -0.490 5.490 17 C 0.011 3.989 18 C 0.064 3.936 19 N -0.691 5.691 20 C 0.064 3.936 21 C 0.019 3.981 22 C -0.170 4.170 23 C -0.102 4.102 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.007 1.007 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.346 0.654 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.036 0.964 42 H 0.140 0.860 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.180 -22.696 -0.973 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.124 4.124 11 C -0.109 4.109 12 C -0.107 4.107 13 C -0.120 4.120 14 C -0.160 4.160 15 C -0.005 4.005 16 N -0.206 5.206 17 C -0.117 4.117 18 C -0.066 4.066 19 N -0.319 5.319 20 C -0.066 4.066 21 C -0.108 4.108 22 C -0.191 4.191 23 C -0.121 4.121 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.158 0.842 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.049 -23.733 -0.568 27.586 hybrid contribution -0.378 2.718 -0.492 2.788 sum 13.671 -21.015 -1.060 25.093 Atomic orbital electron populations 1.70106 1.07772 1.27734 1.51768 1.25999 0.95808 1.03388 0.94730 0.85398 0.79010 0.78731 0.77915 1.18711 1.20218 1.20193 1.21736 0.93436 0.92556 1.50427 0.92509 1.19043 0.94444 0.93040 0.94889 1.21379 0.97778 0.93127 1.00139 1.20553 0.96209 0.91831 1.02354 1.19983 0.99460 0.97455 0.93850 1.21091 0.97015 0.96076 0.97865 1.20878 0.99794 0.97979 0.97348 1.19053 0.96735 0.90981 0.93718 1.59316 1.12621 1.33074 1.15604 1.23098 1.01472 0.99116 0.88046 1.22150 0.88882 0.95763 0.99843 1.60735 1.21095 1.46702 1.03400 1.22152 0.98178 0.95248 0.91033 1.23063 0.89834 0.98700 0.99233 1.21409 1.01564 0.98230 0.97889 1.21075 0.97077 0.96106 0.97806 0.92720 0.98915 0.98887 0.93512 0.93618 0.91634 0.91545 0.85322 0.84569 0.93745 0.89326 0.90450 0.88138 0.83645 0.90236 0.88272 0.89332 0.94576 0.84230 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.71 5.13 30.59 0.16 -3.56 16 11 C -0.07 -2.55 5.34 29.85 0.16 -2.39 16 12 C -0.11 -3.29 5.14 -19.84 -0.10 -3.39 16 13 C -0.10 -2.85 9.69 22.25 0.22 -2.64 16 14 C -0.14 -3.44 9.19 22.40 0.21 -3.24 16 15 C 0.09 2.19 5.64 38.21 0.22 2.40 16 16 N -0.49 -9.38 4.76 -694.75 -3.30 -12.68 16 17 C 0.01 0.17 4.29 86.31 0.37 0.54 16 18 C 0.06 0.78 6.72 86.31 0.58 1.36 16 19 N -0.69 -8.66 6.91 -513.42 -3.55 -12.20 16 20 C 0.06 0.80 6.72 86.31 0.58 1.38 16 21 C 0.02 0.30 5.37 86.31 0.46 0.76 16 22 C -0.17 -4.14 8.82 22.40 0.20 -3.94 16 23 C -0.10 -2.86 9.69 22.25 0.22 -2.64 16 24 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 30 H 0.07 2.31 8.08 -2.39 -0.02 2.30 16 31 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.14 2.82 7.19 -2.91 -0.02 2.79 16 33 H 0.04 0.69 7.57 -2.39 -0.02 0.67 16 34 H 0.09 1.34 7.18 -2.39 -0.02 1.32 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.35 3.72 8.89 -89.69 -0.80 2.93 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.39 6.82 -2.38 -0.02 1.37 16 41 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.14 2.77 5.81 -2.91 -0.02 2.75 16 43 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -66.65 342.17 -0.26 -66.90 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.18 Total: 13.62 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 4.10 Total: -45.19 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -6.57 Total: -82.31 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.65 -0.26 -66.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.649 kcal (2) G-P(sol) polarization free energy of solvation -66.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds