Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47178 * 239.99774 * 3 2 1 5 5 H 1.48500 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47103 * 120.00196 * 3 2 1 7 7 C 1.38653 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00407 * 180.02562 * 7 2 1 9 9 O 1.34837 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.35754 * 117.00266 * 185.06353 * 9 7 2 11 11 C 1.38898 * 120.06748 * 354.40149 * 10 9 7 12 12 C 1.38077 * 119.92849 * 180.02562 * 11 10 9 13 13 C 1.38322 * 120.06723 * 359.74387 * 12 11 10 14 14 C 1.38277 * 120.14212 * 0.51117 * 13 12 11 15 15 C 1.38121 * 120.06553 * 359.48544 * 14 13 12 16 16 C 1.50698 * 120.03860 * 180.27442 * 15 14 13 17 17 C 1.53000 * 109.47599 * 265.00727 * 16 15 14 18 18 C 1.52995 * 109.47334 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47075 * 294.99835 * 18 17 16 20 20 C 1.53004 * 109.46902 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.46870 * 60.00191 * 20 19 18 22 22 C 1.52995 * 109.47339 * 299.99622 * 21 20 19 23 23 C 1.53005 * 109.46833 * 174.99942 * 18 17 16 24 24 H 0.96996 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.03419 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.96702 * 179.97438 * 12 11 10 27 27 H 1.08005 * 119.92973 * 180.25914 * 13 12 11 28 28 H 1.07991 * 119.96655 * 179.76883 * 14 13 12 29 29 H 1.09001 * 109.46710 * 25.00570 * 16 15 14 30 30 H 1.09002 * 109.47629 * 145.00026 * 16 15 14 31 31 H 1.09001 * 109.46962 * 299.99689 * 17 16 15 32 32 H 1.09007 * 109.47164 * 59.99512 * 17 16 15 33 33 H 1.08996 * 109.47168 * 54.99583 * 18 17 16 34 34 H 1.08996 * 109.46917 * 299.99902 * 19 18 17 35 35 H 1.08993 * 109.46763 * 60.00198 * 19 18 17 36 36 H 1.09001 * 109.46944 * 300.00032 * 20 19 18 37 37 H 1.08998 * 109.46967 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46867 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.47065 * 60.00282 * 21 20 19 40 40 H 1.09001 * 109.47281 * 300.00652 * 22 21 20 41 41 H 1.08993 * 109.47424 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46920 * 299.99785 * 23 18 17 43 43 H 1.08995 * 109.47065 * 60.00472 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5047 0.1078 11 6 3.4573 -3.4396 0.0942 12 6 4.2024 -4.5971 0.2030 13 6 3.5684 -5.8198 0.3308 14 6 2.1874 -5.8884 0.3394 15 6 1.4365 -4.7342 0.2310 16 6 -0.0685 -4.8091 0.2467 17 6 -0.5922 -4.8491 -1.1903 18 6 -2.1202 -4.9258 -1.1743 19 6 -2.5578 -6.2509 -0.5470 20 6 -4.0858 -6.3273 -0.5305 21 6 -4.6163 -6.2414 -1.9631 22 6 -4.1787 -4.9163 -2.5904 23 6 -2.6501 -4.8402 -2.6071 24 1 -0.4850 0.8400 0.0004 25 1 3.9528 -2.4849 -0.0022 26 1 5.2812 -4.5472 0.1921 27 1 4.1534 -6.7233 0.4199 28 1 1.6954 -6.8449 0.4355 29 1 -0.3819 -5.7108 0.7728 30 1 -0.4707 -3.9332 0.7557 31 1 -0.2788 -3.9474 -1.7165 32 1 -0.1901 -5.7251 -1.6994 33 1 -2.5194 -4.0974 -0.5891 34 1 -2.1586 -7.0793 -1.1322 35 1 -2.1803 -6.3118 0.4736 36 1 -4.4847 -5.4988 0.0550 37 1 -4.3976 -7.2711 -0.0832 38 1 -5.7048 -6.2962 -1.9513 39 1 -4.2174 -7.0698 -2.5484 40 1 -4.5775 -4.0879 -2.0049 41 1 -4.5569 -4.8549 -3.6107 42 1 -2.3383 -3.8962 -3.0540 43 1 -2.2509 -5.6686 -3.1923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250117995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -47.745737 kcal Electronic energy + Delta-G solvation = -21204.344775 eV Core-core repulsion = 18213.226507 eV Total energy + Delta-G solvation = -2991.118268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.23051 -38.43479 -36.33882 -33.97598 -32.24005 -30.88789 -30.53755 -28.92308 -27.18219 -25.31316 -23.61222 -22.38148 -21.48448 -20.84632 -19.87401 -19.46512 -17.88825 -16.73705 -15.36743 -14.97023 -14.71853 -14.33961 -14.20614 -13.97401 -13.91546 -13.59402 -13.41257 -12.96229 -12.71150 -12.48309 -12.17159 -11.88469 -11.67830 -11.54367 -11.43356 -11.09588 -10.95377 -10.86984 -10.72094 -10.67511 -10.52193 -10.44113 -10.20858 -10.04267 -9.74865 -9.60466 -9.22570 -8.80276 -7.95881 -7.13034 -6.41646 -3.99830 2.22854 2.44116 3.14638 3.15757 3.17977 3.99167 4.60456 4.85481 4.91548 4.94151 5.12203 5.31193 5.35903 5.39744 5.55464 5.61897 5.68349 5.69527 5.70485 5.77588 5.80520 5.89231 5.95741 6.11364 6.14716 6.15816 6.24229 6.25283 6.31130 6.36418 6.42968 6.48024 6.50994 6.63280 6.71005 6.75880 6.89484 6.94956 7.08653 7.18079 7.33759 7.42744 7.52756 7.90993 8.03260 9.04430 9.75348 10.75957 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.005538 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.914950 B = 5054.581316 C = 6764.406312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.392 4.392 8 H 0.089 0.911 9 O -0.171 6.171 10 C 0.155 3.845 11 C -0.235 4.235 12 C -0.080 4.080 13 C -0.214 4.214 14 C -0.078 4.078 15 C -0.154 4.154 16 C -0.060 4.060 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.269 0.731 25 H 0.125 0.875 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -10.151 -2.264 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.106 0.894 9 O -0.075 6.075 10 C 0.101 3.899 11 C -0.254 4.254 12 C -0.099 4.099 13 C -0.233 4.233 14 C -0.096 4.096 15 C -0.156 4.156 16 C -0.097 4.097 17 C -0.140 4.140 18 C -0.104 4.104 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.143 0.857 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.692 -9.919 -2.289 11.209 hybrid contribution 0.723 0.865 -0.006 1.127 sum -3.969 -9.054 -2.295 10.149 Atomic orbital electron populations 1.70021 1.05813 1.27583 1.46194 1.25219 0.95800 0.98617 0.96664 0.85841 0.78749 0.80073 0.79128 1.19595 1.20329 1.19597 1.21256 0.91714 0.81012 1.52905 0.89371 1.83980 1.33935 1.11139 1.78429 1.19201 0.90040 0.87840 0.92798 1.21160 0.93873 0.98902 1.11450 1.20724 0.98320 0.92533 0.98302 1.20564 0.94363 0.96847 1.11482 1.20546 0.93533 0.96262 0.99242 1.19027 0.95489 0.90794 1.10251 1.20282 0.91092 1.01588 0.96738 1.21527 0.93514 1.01829 0.97094 1.21159 0.95839 0.97512 0.95874 1.21632 0.94824 0.97696 1.00998 1.21547 0.96411 1.01220 0.96571 1.21521 0.99632 0.97856 0.96490 1.21543 0.96477 0.97540 1.00135 1.21577 0.94719 1.01740 0.97053 0.92111 0.85731 0.87754 0.87892 0.87320 0.92568 0.90785 0.91293 0.93024 0.90959 0.92427 0.91777 0.92075 0.92607 0.92673 0.92364 0.92010 0.92567 0.91858 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.77 8.90 0.01 0.00 -4.77 16 10 C 0.15 3.74 6.62 -39.11 -0.26 3.48 16 11 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 12 C -0.08 -1.54 10.04 -39.61 -0.40 -1.93 16 13 C -0.21 -3.84 10.04 -39.54 -0.40 -4.23 16 14 C -0.08 -1.43 9.68 -39.61 -0.38 -1.81 16 15 C -0.15 -3.24 5.15 -104.44 -0.54 -3.78 16 16 C -0.06 -1.13 4.82 -27.88 -0.13 -1.27 16 17 C -0.10 -1.80 4.66 -26.73 -0.12 -1.92 16 18 C -0.09 -1.29 2.19 -90.62 -0.20 -1.49 16 19 C -0.11 -1.47 4.96 -26.73 -0.13 -1.60 16 20 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.12 -1.43 5.93 -26.70 -0.16 -1.59 16 23 C -0.11 -1.57 5.21 -26.70 -0.14 -1.71 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.12 2.77 5.64 -52.49 -0.30 2.47 16 26 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 30 H 0.07 1.61 7.70 -51.93 -0.40 1.21 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -28.92 340.50 -9.60 -38.52 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.12 Total: 5.65 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: -3.34 Total: -35.97 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.76 Total: -24.06 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: 0.00 Total: -4.77 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.92 -9.60 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250117995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.223 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds