Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47178 * 239.99774 * 3 2 1 5 5 H 1.48500 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47103 * 120.00196 * 3 2 1 7 7 C 1.38653 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00407 * 180.02562 * 7 2 1 9 9 O 1.34837 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.35754 * 117.00266 * 185.06353 * 9 7 2 11 11 C 1.38898 * 120.06748 * 354.40149 * 10 9 7 12 12 C 1.38077 * 119.92849 * 180.02562 * 11 10 9 13 13 C 1.38322 * 120.06723 * 359.74387 * 12 11 10 14 14 C 1.38277 * 120.14212 * 0.51117 * 13 12 11 15 15 C 1.38121 * 120.06553 * 359.48544 * 14 13 12 16 16 C 1.50698 * 120.03860 * 180.27442 * 15 14 13 17 17 C 1.53000 * 109.47599 * 265.00727 * 16 15 14 18 18 C 1.52995 * 109.47334 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47075 * 294.99835 * 18 17 16 20 20 C 1.53004 * 109.46902 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.46870 * 60.00191 * 20 19 18 22 22 C 1.52995 * 109.47339 * 299.99622 * 21 20 19 23 23 C 1.53005 * 109.46833 * 174.99942 * 18 17 16 24 24 H 0.96996 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.03419 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.96702 * 179.97438 * 12 11 10 27 27 H 1.08005 * 119.92973 * 180.25914 * 13 12 11 28 28 H 1.07991 * 119.96655 * 179.76883 * 14 13 12 29 29 H 1.09001 * 109.46710 * 25.00570 * 16 15 14 30 30 H 1.09002 * 109.47629 * 145.00026 * 16 15 14 31 31 H 1.09001 * 109.46962 * 299.99689 * 17 16 15 32 32 H 1.09007 * 109.47164 * 59.99512 * 17 16 15 33 33 H 1.08996 * 109.47168 * 54.99583 * 18 17 16 34 34 H 1.08996 * 109.46917 * 299.99902 * 19 18 17 35 35 H 1.08993 * 109.46763 * 60.00198 * 19 18 17 36 36 H 1.09001 * 109.46944 * 300.00032 * 20 19 18 37 37 H 1.08998 * 109.46967 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46867 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.47065 * 60.00282 * 21 20 19 40 40 H 1.09001 * 109.47281 * 300.00652 * 22 21 20 41 41 H 1.08993 * 109.47424 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46920 * 299.99785 * 23 18 17 43 43 H 1.08995 * 109.47065 * 60.00472 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5047 0.1078 11 6 3.4573 -3.4396 0.0942 12 6 4.2024 -4.5971 0.2030 13 6 3.5684 -5.8198 0.3308 14 6 2.1874 -5.8884 0.3394 15 6 1.4365 -4.7342 0.2310 16 6 -0.0685 -4.8091 0.2467 17 6 -0.5922 -4.8491 -1.1903 18 6 -2.1202 -4.9258 -1.1743 19 6 -2.5578 -6.2509 -0.5470 20 6 -4.0858 -6.3273 -0.5305 21 6 -4.6163 -6.2414 -1.9631 22 6 -4.1787 -4.9163 -2.5904 23 6 -2.6501 -4.8402 -2.6071 24 1 -0.4850 0.8400 0.0004 25 1 3.9528 -2.4849 -0.0022 26 1 5.2812 -4.5472 0.1921 27 1 4.1534 -6.7233 0.4199 28 1 1.6954 -6.8449 0.4355 29 1 -0.3819 -5.7108 0.7728 30 1 -0.4707 -3.9332 0.7557 31 1 -0.2788 -3.9474 -1.7165 32 1 -0.1901 -5.7251 -1.6994 33 1 -2.5194 -4.0974 -0.5891 34 1 -2.1586 -7.0793 -1.1322 35 1 -2.1803 -6.3118 0.4736 36 1 -4.4847 -5.4988 0.0550 37 1 -4.3976 -7.2711 -0.0832 38 1 -5.7048 -6.2962 -1.9513 39 1 -4.2174 -7.0698 -2.5484 40 1 -4.5775 -4.0879 -2.0049 41 1 -4.5569 -4.8549 -3.6107 42 1 -2.3383 -3.8962 -3.0540 43 1 -2.2509 -5.6686 -3.1923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250117995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = -61.237847 kcal Electronic energy + Delta-G solvation = -21204.929837 eV Core-core repulsion = 18213.226507 eV Total energy + Delta-G solvation = -2991.703330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90030 -39.62933 -38.09320 -35.34841 -34.24570 -32.24479 -31.58603 -30.56628 -28.61661 -27.30430 -24.96077 -23.50243 -23.15486 -22.17222 -21.32557 -20.57398 -19.76310 -18.57870 -16.66656 -16.58205 -16.33712 -15.89764 -15.61542 -15.42633 -15.13770 -14.99549 -14.81001 -14.50133 -14.21404 -13.98246 -13.57156 -13.43751 -13.07488 -12.91706 -12.79557 -12.63768 -12.40548 -12.27318 -12.16626 -12.01507 -11.95243 -11.87998 -11.54917 -11.29196 -11.12973 -10.80624 -10.77970 -10.76600 -9.54597 -8.88336 -8.44495 -6.11284 0.61493 0.80270 1.32906 1.43523 1.48381 2.17612 2.86327 3.19698 3.57394 3.75678 3.84004 3.90608 4.08851 4.15624 4.27446 4.30704 4.36195 4.47855 4.57114 4.58718 4.60862 4.68367 4.75368 4.76730 4.82915 4.86825 4.88948 5.04868 5.13768 5.15670 5.17110 5.22483 5.28892 5.30126 5.37988 5.40806 5.43342 5.49057 5.59055 5.66086 5.73138 5.79409 5.84928 6.06437 6.31639 7.00390 7.83541 8.77613 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.005538 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.914950 B = 5054.581316 C = 6764.406312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.019 4.019 3 Si 1.013 2.987 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.095 0.905 9 O -0.219 6.219 10 C 0.111 3.889 11 C -0.252 4.252 12 C -0.083 4.083 13 C -0.191 4.191 14 C -0.074 4.074 15 C -0.166 4.166 16 C -0.053 4.053 17 C -0.091 4.091 18 C -0.082 4.082 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.270 0.730 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -13.393 -2.315 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.217 4.217 3 Si 0.832 3.168 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.113 0.887 9 O -0.125 6.125 10 C 0.061 3.939 11 C -0.271 4.271 12 C -0.100 4.100 13 C -0.210 4.210 14 C -0.092 4.092 15 C -0.167 4.167 16 C -0.090 4.090 17 C -0.129 4.129 18 C -0.101 4.101 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.150 4.150 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.168 0.832 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.582 -13.209 -2.337 13.884 hybrid contribution 0.520 1.593 0.031 1.676 sum -3.062 -11.616 -2.307 12.232 Atomic orbital electron populations 1.70180 1.07784 1.28538 1.48804 1.26458 0.96789 1.02388 0.96054 0.84736 0.77477 0.74803 0.79763 1.18379 1.19593 1.18387 1.21724 0.92304 0.81872 1.53226 0.88750 1.83962 1.35235 1.12071 1.81248 1.19836 0.91285 0.88076 0.94743 1.21305 0.93447 1.00051 1.12307 1.21137 1.00045 0.91766 0.97096 1.21160 0.94487 0.97901 1.07420 1.21034 0.94055 0.96670 0.97448 1.19466 0.96651 0.90797 1.09805 1.20235 0.90280 1.01061 0.97401 1.21407 0.95428 1.00208 0.95845 1.21094 0.93900 0.98308 0.96762 1.21586 0.96201 0.96040 1.00730 1.21555 0.95037 1.01932 0.97181 1.21512 1.00705 0.96985 0.95876 1.21541 0.94690 0.98304 1.01061 1.21557 0.96443 1.01020 0.95973 0.92066 0.86932 0.84282 0.83324 0.83240 0.89178 0.95105 0.96035 0.91052 0.94090 0.90833 0.91944 0.93181 0.90422 0.91027 0.91138 0.93322 0.91121 0.94333 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.65 13.67 21.61 0.30 -56.36 16 2 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 3 Si 1.01 43.84 29.55 68.60 2.03 45.87 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.41 -24.63 9.49 67.92 0.64 -23.98 16 8 H 0.10 5.22 5.20 -2.91 -0.02 5.20 16 9 O -0.22 -13.21 8.90 -22.86 -0.20 -13.42 16 10 C 0.11 5.62 6.62 22.58 0.15 5.77 16 11 C -0.25 -11.39 9.17 22.39 0.21 -11.19 16 12 C -0.08 -2.93 10.04 22.25 0.22 -2.70 16 13 C -0.19 -5.98 10.04 22.30 0.22 -5.76 16 14 C -0.07 -2.48 9.68 22.25 0.22 -2.26 16 15 C -0.17 -7.01 5.15 -19.74 -0.10 -7.12 16 16 C -0.05 -2.06 4.82 29.85 0.14 -1.92 16 17 C -0.09 -3.36 4.66 30.59 0.14 -3.22 16 18 C -0.08 -2.58 2.19 -10.79 -0.02 -2.61 16 19 C -0.11 -2.62 4.96 30.60 0.15 -2.47 16 20 C -0.12 -2.50 5.92 30.60 0.18 -2.31 16 21 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 22 C -0.12 -2.78 5.93 30.61 0.18 -2.60 16 23 C -0.11 -3.18 5.21 30.62 0.16 -3.02 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 26 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.15 3.80 8.06 -2.92 -0.02 3.78 16 29 H 0.09 2.85 6.47 -2.39 -0.02 2.83 16 30 H 0.03 1.45 7.70 -2.39 -0.02 1.43 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.52 6.56 -2.39 -0.02 1.51 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.81 340.50 6.23 -63.58 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.97 Total: 28.35 kcal Atomic # 6 Polarization: -71.17 SS G_CDS: 3.14 Total: -68.02 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.30 Total: -56.36 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.20 Total: -13.42 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.81 6.23 -63.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250117995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.340 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds